Wall clock time and date at job start Wed Apr 1 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47198 * 120.00829 * 2 1 3 5 5 O 1.21271 * 120.00046 * 102.30083 * 4 2 1 6 6 N 1.34782 * 119.99612 * 282.30196 * 4 2 1 7 7 C 1.46491 * 119.99664 * 184.03376 * 6 4 2 8 8 C 1.46502 * 119.99985 * 4.02570 * 6 4 2 9 9 H 1.09004 * 109.47176 * 5.65111 * 8 6 4 10 10 C 1.53005 * 109.46751 * 125.64631 * 8 6 4 11 11 C 1.52996 * 109.47329 * 245.65149 * 8 6 4 12 12 N 1.46891 * 109.47440 * 54.99990 * 11 8 6 13 13 C 1.46898 * 111.00178 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47019 * 180.02562 * 13 12 11 15 15 O 1.21295 * 120.00272 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99837 * 179.97438 * 14 13 12 17 17 C 1.37106 * 120.00156 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99575 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00184 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00028 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47050 * 90.00586 * 21 19 17 23 23 H 1.48511 * 109.46985 * 209.99902 * 21 19 17 24 24 H 1.48494 * 109.47445 * 329.99833 * 21 19 17 25 25 C 1.50709 * 109.46753 * 240.00614 * 2 1 3 26 26 C 1.38233 * 119.99628 * 299.72674 * 25 2 1 27 27 C 1.38241 * 119.99456 * 179.81529 * 26 25 2 28 28 C 1.38227 * 119.99926 * 0.39276 * 27 26 25 29 29 C 1.38233 * 120.00374 * 359.85746 * 28 27 26 30 30 C 1.38227 * 119.99912 * 120.00007 * 25 2 1 31 31 H 1.08996 * 109.47111 * 182.54103 * 1 2 3 32 32 H 1.08995 * 109.47055 * 302.53787 * 1 2 3 33 33 H 1.09002 * 109.46999 * 62.53443 * 1 2 3 34 34 H 1.09003 * 109.47334 * 271.60628 * 7 6 4 35 35 H 1.08991 * 109.47659 * 31.60871 * 7 6 4 36 36 H 1.09001 * 109.47271 * 151.61323 * 7 6 4 37 37 H 1.09001 * 109.46397 * 60.00456 * 10 8 6 38 38 H 1.09001 * 109.46955 * 179.97438 * 10 8 6 39 39 H 1.08999 * 109.47476 * 300.00212 * 10 8 6 40 40 H 1.09003 * 109.47002 * 175.00769 * 11 8 6 41 41 H 1.09004 * 109.46636 * 294.99796 * 11 8 6 42 42 H 1.00902 * 110.99665 * 56.04697 * 12 11 8 43 43 H 1.08996 * 109.46843 * 299.99860 * 13 12 11 44 44 H 1.08997 * 109.47305 * 59.99978 * 13 12 11 45 45 H 0.96998 * 120.00266 * 0.02562 * 16 14 13 46 46 H 0.97003 * 120.00075 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.00416 * 359.97438 * 26 25 2 48 48 H 1.07998 * 119.99502 * 180.22808 * 27 26 25 49 49 H 1.08009 * 120.00006 * 179.83282 * 28 27 26 50 50 H 1.08003 * 120.00351 * 179.97438 * 29 28 27 51 51 H 1.07999 * 120.00328 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 8 2.4455 -1.8478 1.1476 6 7 2.0226 -0.0822 2.4227 7 6 2.5919 -0.7393 3.6016 8 6 1.4427 1.2581 2.5395 9 1 0.9835 1.5393 1.5917 10 6 0.3807 1.2600 3.6410 11 6 2.5433 2.2612 2.8904 12 7 3.6207 2.1740 1.8957 13 6 4.6979 3.1248 2.2015 14 6 5.7822 3.0069 1.1617 15 8 5.6686 2.2095 0.2547 16 7 6.8777 3.7881 1.2389 17 6 7.8645 3.6805 0.2931 18 1 7.7637 2.9699 -0.5140 19 6 8.9942 4.4856 0.3730 20 7 9.1170 5.3498 1.3553 21 14 10.3382 4.3393 -0.9160 22 1 10.0554 5.2745 -2.0343 23 1 11.6486 4.6797 -0.3056 24 1 10.3794 2.9478 -1.4326 25 6 2.0323 -0.7103 -1.2306 26 6 1.7030 -2.0354 -1.4466 27 6 2.1605 -2.6858 -2.5773 28 6 2.9541 -2.0135 -3.4879 29 6 3.2877 -0.6900 -3.2693 30 6 2.8270 -0.0385 -2.1405 31 1 -0.3633 -1.0266 0.0456 32 1 -0.3633 0.5527 0.8663 33 1 -0.3633 0.4740 -0.9119 34 1 1.8240 -1.3401 4.0891 35 1 3.4169 -1.3826 3.2962 36 1 2.9582 0.0158 4.2972 37 1 0.8399 0.9789 4.5887 38 1 -0.0505 2.2573 3.7282 39 1 -0.4034 0.5454 3.3910 40 1 2.1294 3.2696 2.8902 41 1 2.9418 2.0323 3.8788 42 1 3.2642 2.3187 0.9629 43 1 4.2992 4.1392 2.1968 44 1 5.1113 2.9015 3.1850 45 1 6.9684 4.4260 1.9639 46 1 9.9058 5.9115 1.4113 47 1 1.0861 -2.5617 -0.7333 48 1 1.9002 -3.7200 -2.7479 49 1 3.3138 -2.5225 -4.3700 50 1 3.9081 -0.1649 -3.9805 51 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319562219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:57 Heat of formation + Delta-G solvation = -65.799834 kcal Electronic energy + Delta-G solvation = -31496.316792 eV Core-core repulsion = 27394.616718 eV Total energy + Delta-G solvation = -4101.700075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55098 -40.15410 -39.73160 -38.08198 -36.13656 -35.42254 -35.15185 -33.26126 -32.13521 -31.74571 -30.53253 -28.96614 -28.10295 -26.66000 -25.33843 -24.59237 -23.48823 -22.91241 -22.08482 -21.07424 -19.96760 -19.73562 -18.36091 -17.97568 -17.61417 -17.01186 -16.63386 -16.59161 -16.32376 -15.98627 -15.87082 -15.66992 -15.26681 -15.14321 -15.08313 -14.62434 -14.46170 -14.15419 -14.11410 -13.95549 -13.54427 -13.50420 -13.45602 -13.18586 -13.06938 -13.03614 -12.91823 -12.77792 -12.71086 -12.52013 -12.43653 -12.37424 -12.14307 -11.86155 -11.81725 -11.70926 -11.50597 -10.64751 -10.34179 -10.00873 -9.74673 -9.62903 -9.52443 -9.25927 -8.47468 -5.95508 0.44937 0.55666 1.36051 1.39875 1.52368 1.72588 2.06640 2.13241 2.28161 2.89859 2.95307 3.20275 3.47785 3.57543 3.70175 3.80292 4.03107 4.11112 4.14364 4.23911 4.30340 4.30882 4.32988 4.36020 4.47333 4.50758 4.59040 4.63268 4.67583 4.69982 4.71833 4.79195 4.80059 4.88541 4.91983 4.98615 5.07203 5.14264 5.18399 5.22297 5.36469 5.40180 5.58982 5.64398 5.66784 5.73696 5.89103 6.10907 6.14741 6.38842 6.50994 6.60543 7.13132 7.28449 7.57107 8.13267 8.69983 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.003338 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.120486 B = 8385.000215 C =10756.178423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 H 0.100 0.900 4 C 0.523 3.477 5 O -0.582 6.582 6 N -0.589 5.589 7 C 0.094 3.906 8 C 0.126 3.874 9 H 0.103 0.897 10 C -0.153 4.153 11 C 0.043 3.957 12 N -0.681 5.681 13 C 0.068 3.932 14 C 0.436 3.564 15 O -0.620 6.620 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.075 0.925 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.989 3.011 22 H -0.269 1.269 23 H -0.270 1.270 24 H -0.277 1.277 25 C -0.084 4.084 26 C -0.094 4.094 27 C -0.135 4.135 28 C -0.125 4.125 29 C -0.138 4.138 30 C -0.123 4.123 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.339 0.661 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.120 0.880 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.129 0.871 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.103 -5.818 3.114 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 H 0.118 0.882 4 C 0.312 3.688 5 O -0.462 6.462 6 N -0.320 5.320 7 C -0.048 4.048 8 C 0.023 3.977 9 H 0.121 0.879 10 C -0.211 4.211 11 C -0.086 4.086 12 N -0.314 5.314 13 C -0.064 4.064 14 C 0.223 3.777 15 O -0.506 6.506 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.093 0.907 19 C -0.211 4.211 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.194 1.194 23 H -0.195 1.195 24 H -0.202 1.202 25 C -0.084 4.084 26 C -0.112 4.112 27 C -0.153 4.153 28 C -0.143 4.143 29 C -0.156 4.156 30 C -0.141 4.141 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.157 0.843 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.138 0.862 48 H 0.159 0.841 49 H 0.161 0.839 50 H 0.147 0.853 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.499 -7.316 2.879 22.891 hybrid contribution 1.127 1.166 -0.443 1.681 sum -20.371 -6.150 2.436 21.419 Atomic orbital electron populations 1.21865 0.89618 1.03334 1.04392 1.20258 0.99221 0.99593 0.89523 0.88168 1.20680 0.77207 0.85929 0.85030 1.90646 1.49103 1.20391 1.86099 1.47663 1.58807 1.17464 1.08093 1.21483 0.98032 0.97894 0.87414 1.21635 0.93317 0.80545 1.02243 0.87872 1.22072 0.97376 1.04138 0.97532 1.22567 0.91082 0.98662 0.96335 1.60005 1.11183 1.53864 1.06312 1.21499 0.91504 0.95840 0.97571 1.20981 0.84883 0.83069 0.88732 1.90519 1.80629 1.40603 1.38861 1.41921 1.17271 1.35646 1.26340 1.19614 0.98644 1.20980 1.06891 0.90680 1.25968 1.00168 0.95240 0.99703 1.69662 1.30733 1.23458 1.32246 0.84991 0.77335 0.78458 0.77952 1.19424 1.19479 1.20174 1.19545 0.98701 0.94914 0.95246 1.21043 0.99725 0.93776 0.96618 1.21413 0.98662 1.00762 0.94474 1.21420 0.98182 0.94449 1.00264 1.21347 1.00382 0.95862 0.98013 1.21207 0.97417 1.00377 0.95064 0.92182 0.89441 0.90023 0.91704 0.94259 0.89610 0.91447 0.88975 0.91438 0.91570 0.89913 0.84258 0.91164 0.88190 0.77019 0.91327 0.86237 0.84106 0.83927 0.85314 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.63 71.98 0.62 -1.63 16 2 C -0.06 -1.61 2.03 -12.28 -0.02 -1.64 16 3 H 0.10 2.45 5.75 -2.39 -0.01 2.44 16 4 C 0.52 15.49 6.83 87.66 0.60 16.09 16 5 O -0.58 -22.18 14.25 -3.00 -0.04 -22.22 16 6 N -0.59 -13.65 2.49 -822.61 -2.04 -15.70 16 7 C 0.09 2.12 9.25 127.77 1.18 3.30 16 8 C 0.13 1.97 2.15 44.99 0.10 2.07 16 9 H 0.10 1.45 4.33 -2.39 -0.01 1.44 16 10 C -0.15 -1.41 9.11 71.98 0.66 -0.75 16 11 C 0.04 0.77 5.05 86.30 0.44 1.21 16 12 N -0.68 -19.63 5.85 -517.96 -3.03 -22.65 16 13 C 0.07 2.21 6.17 85.56 0.53 2.73 16 14 C 0.44 20.57 7.82 87.66 0.69 21.25 16 15 O -0.62 -34.51 15.78 -3.08 -0.05 -34.56 16 16 N -0.57 -29.43 5.29 -306.97 -1.62 -31.05 16 17 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 18 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 19 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 20 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 21 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C -0.08 -2.50 4.58 -19.87 -0.09 -2.60 16 26 C -0.09 -2.70 7.87 22.27 0.18 -2.52 16 27 C -0.14 -3.52 10.05 22.27 0.22 -3.29 16 28 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 29 C -0.14 -4.05 10.05 22.27 0.22 -3.82 16 30 C -0.12 -3.90 9.67 22.27 0.22 -3.68 16 31 H 0.06 1.06 7.50 -2.39 -0.02 1.04 16 32 H 0.09 1.02 6.30 -2.39 -0.02 1.01 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.16 7.53 -2.39 -0.02 1.14 16 36 H 0.09 1.57 6.76 -2.39 -0.02 1.56 16 37 H 0.07 0.61 7.49 -2.39 -0.02 0.59 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.42 7.08 -2.38 -0.02 1.40 16 42 H 0.34 10.36 7.36 -89.69 -0.66 9.70 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 46 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 47 H 0.12 3.34 7.10 -2.91 -0.02 3.32 16 48 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 49 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 50 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 51 H 0.11 3.74 7.95 -2.91 -0.02 3.71 16 Total: -1.00 -77.91 411.70 2.11 -75.80 By element: Atomic # 1 Polarization: 49.35 SS G_CDS: -0.44 Total: 48.91 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 7.03 Total: 5.35 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.41 Total: -118.87 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.09 Total: -56.78 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -77.91 2.11 -75.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319562219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.000 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds