Wall clock time and date at job start Wed Apr 1 2020 05:30:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.47056 * 2 1
4 4 C 1.53004 * 109.47085 * 240.00401 * 2 1 3
5 5 N 1.46898 * 109.46991 * 185.36770 * 4 2 1
6 6 C 1.46901 * 110.99844 * 173.75891 * 5 4 2
7 7 C 1.50699 * 109.47259 * 180.02562 * 6 5 4
8 8 O 1.21296 * 120.00021 * 0.02562 * 7 6 5
9 9 N 1.34770 * 120.00320 * 179.97438 * 7 6 5
10 10 C 1.37097 * 120.00216 * 179.97438 * 9 7 6
11 11 H 1.08002 * 120.00119 * 0.02562 * 10 9 7
12 12 C 1.38950 * 119.99813 * 180.02562 * 10 9 7
13 13 N 1.31410 * 120.00516 * 0.02562 * 12 10 9
14 14 Si 1.86812 * 119.99868 * 180.02562 * 12 10 9
15 15 H 1.48493 * 109.46725 * 60.00122 * 14 12 10
16 16 H 1.48500 * 109.46996 * 180.02562 * 14 12 10
17 17 H 1.48498 * 109.46984 * 300.00427 * 14 12 10
18 18 N 1.46501 * 109.47337 * 120.00236 * 2 1 3
19 19 C 1.46498 * 119.99519 * 67.18919 * 18 2 1
20 20 C 1.34777 * 120.00019 * 247.18616 * 18 2 1
21 21 O 1.21288 * 119.99703 * 177.35537 * 20 18 2
22 22 C 1.50694 * 120.00203 * 357.35790 * 20 18 2
23 23 H 1.09004 * 109.46879 * 54.26578 * 22 20 18
24 24 C 1.53001 * 109.47255 * 294.26710 * 22 20 18
25 25 C 1.50694 * 109.47174 * 174.26317 * 22 20 18
26 26 C 1.38237 * 120.00210 * 59.72889 * 25 22 20
27 27 C 1.38234 * 120.00400 * 179.81025 * 26 25 22
28 28 C 1.38237 * 119.99788 * 0.39588 * 27 26 25
29 29 C 1.38232 * 120.00219 * 359.85536 * 28 27 26
30 30 C 1.38237 * 120.00432 * 240.00069 * 25 22 20
31 31 H 1.08996 * 109.47109 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.46947 * 299.99694 * 1 2 3
33 33 H 1.08997 * 109.47456 * 59.99695 * 1 2 3
34 34 H 1.09006 * 109.46758 * 65.37202 * 4 2 1
35 35 H 1.09000 * 109.46980 * 305.36984 * 4 2 1
36 36 H 1.00896 * 111.00550 * 297.71237 * 5 4 2
37 37 H 1.08999 * 109.46989 * 300.00356 * 6 5 4
38 38 H 1.08998 * 109.47192 * 59.99988 * 6 5 4
39 39 H 0.97001 * 119.99778 * 0.02562 * 9 7 6
40 40 H 0.96997 * 120.00225 * 179.97438 * 13 12 10
41 41 H 1.09003 * 109.47101 * 95.09184 * 19 18 2
42 42 H 1.09004 * 109.46983 * 215.08236 * 19 18 2
43 43 H 1.08996 * 109.47696 * 335.08329 * 19 18 2
44 44 H 1.09000 * 109.46608 * 306.48601 * 24 22 20
45 45 H 1.08999 * 109.47085 * 66.48612 * 24 22 20
46 46 H 1.08997 * 109.46940 * 186.49089 * 24 22 20
47 47 H 1.08007 * 119.99695 * 359.97438 * 26 25 22
48 48 H 1.07999 * 119.99923 * 180.23221 * 27 26 25
49 49 H 1.07996 * 119.99581 * 179.83380 * 28 27 26
50 50 H 1.07996 * 120.00191 * 179.97438 * 29 28 27
51 51 H 1.08002 * 119.99856 * 359.97438 * 30 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 7 3.5032 -0.8344 -1.1863
6 6 4.0163 -1.6503 -2.2949
7 6 5.5172 -1.7442 -2.1968
8 8 6.1019 -1.1867 -1.2920
9 7 6.2097 -2.4484 -3.1137
10 6 7.5751 -2.5335 -3.0247
11 1 8.0958 -2.0364 -2.2196
12 6 8.2891 -3.2591 -3.9705
13 7 7.6557 -3.8635 -4.9504
14 14 10.1496 -3.3756 -3.8488
15 1 10.5227 -4.0053 -2.5568
16 1 10.6683 -4.1998 -4.9699
17 1 10.7367 -2.0136 -3.9234
18 7 2.0183 -0.6907 1.1961
19 6 1.7987 -2.1307 1.3513
20 6 2.6697 -0.0012 2.1537
21 8 3.0317 -0.5633 3.1656
22 6 2.9480 1.4680 1.9670
23 1 2.0159 1.9896 1.7496
24 6 3.9226 1.6587 0.8031
25 6 3.5549 2.0284 3.2274
26 6 4.7457 1.5166 3.7080
27 6 5.3045 2.0332 4.8620
28 6 4.6683 3.0562 5.5400
29 6 3.4748 3.5645 5.0623
30 6 2.9180 3.0504 3.9062
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8901
33 1 -0.3634 0.5139 -0.8899
34 1 1.7573 -0.1547 -2.1367
35 1 1.6002 -1.7173 -1.2988
36 1 3.9364 0.0768 -1.1773
37 1 3.5857 -2.6501 -2.2399
38 1 3.7421 -1.1883 -3.2433
39 1 5.7421 -2.8946 -3.8371
40 1 8.1542 -4.3698 -5.6108
41 1 2.6769 -2.6722 0.9993
42 1 1.6274 -2.3609 2.4029
43 1 0.9287 -2.4307 0.7673
44 1 4.8084 1.0449 0.9668
45 1 3.4402 1.3596 -0.1274
46 1 4.2136 2.7072 0.7410
47 1 5.2409 0.7148 3.1803
48 1 6.2368 1.6359 5.2353
49 1 5.1035 3.4580 6.4430
50 1 2.9776 4.3634 5.5923
51 1 1.9856 3.4476 3.5330
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001319562220.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:30:00
Heat of formation + Delta-G solvation = -36.563116 kcal
Electronic energy + Delta-G solvation = -31237.204492 eV
Core-core repulsion = 27136.772217 eV
Total energy + Delta-G solvation = -4100.432276 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.58826 -38.92146 -38.26988 -36.99894 -34.57540 -34.22907 -33.74013 -31.36412
-31.13427 -30.86906 -29.66702 -27.67760 -26.97737 -25.08268 -24.50049 -23.35479
-22.58570 -21.95866 -21.05461 -19.43041 -18.88708 -17.88136 -17.26380 -16.91124
-16.26674 -15.71850 -15.52429 -15.41128 -15.04208 -14.77181 -14.57529 -14.35150
-14.11875 -13.94320 -13.72470 -13.49664 -13.31446 -13.27683 -13.05393 -12.74468
-12.64874 -12.39774 -12.26959 -12.08433 -11.99064 -11.88434 -11.66895 -11.58010
-11.51246 -11.44666 -11.02857 -10.99013 -10.90564 -10.70277 -10.44722 -10.22021
-9.56186 -9.50382 -8.84372 -8.69950 -8.61066 -8.40952 -8.08381 -7.96654
-6.42428 -3.83182 1.35001 1.47112 2.78176 3.07221 3.19886 3.25519
3.30131 3.83105 3.89752 4.01545 4.24732 4.49779 4.52313 4.62434
4.83502 4.90122 4.99379 5.02735 5.09886 5.11167 5.14563 5.21817
5.24283 5.34907 5.38063 5.45445 5.49588 5.50679 5.61172 5.63884
5.69660 5.72819 5.77150 5.82482 5.90189 5.94351 6.00997 6.08631
6.09777 6.24023 6.28241 6.45434 6.56205 6.59981 6.67682 7.02923
7.12714 7.48268 7.54445 7.58642 8.05294 8.33736 8.60410 9.17274
9.53442 10.04881 10.75236
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010843 B = 0.002739 C = 0.002321
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2581.586480 B =10220.345167 C =12060.271606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.125 3.875
3 H 0.099 0.901
4 C 0.045 3.955
5 N -0.663 5.663
6 C 0.051 3.949
7 C 0.440 3.560
8 O -0.581 6.581
9 N -0.564 5.564
10 C -0.299 4.299
11 H 0.102 0.898
12 C 0.023 3.977
13 N -0.903 5.903
14 Si 0.930 3.070
15 H -0.273 1.273
16 H -0.284 1.284
17 H -0.274 1.274
18 N -0.589 5.589
19 C 0.093 3.907
20 C 0.526 3.474
21 O -0.535 6.535
22 C -0.069 4.069
23 H 0.095 0.905
24 C -0.146 4.146
25 C -0.066 4.066
26 C -0.076 4.076
27 C -0.123 4.123
28 C -0.123 4.123
29 C -0.128 4.128
30 C -0.115 4.115
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.068 0.932
34 H 0.039 0.961
35 H 0.077 0.923
36 H 0.348 0.652
37 H 0.085 0.915
38 H 0.042 0.958
39 H 0.392 0.608
40 H 0.272 0.728
41 H 0.063 0.937
42 H 0.066 0.934
43 H 0.063 0.937
44 H 0.078 0.922
45 H 0.068 0.932
46 H 0.066 0.934
47 H 0.124 0.876
48 H 0.120 0.880
49 H 0.117 0.883
50 H 0.118 0.882
51 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.564 11.892 10.249 22.821
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.021 3.979
3 H 0.117 0.883
4 C -0.086 4.086
5 N -0.298 5.298
6 C -0.082 4.082
7 C 0.226 3.774
8 O -0.465 6.465
9 N -0.200 5.200
10 C -0.429 4.429
11 H 0.120 0.880
12 C -0.179 4.179
13 N -0.544 5.544
14 Si 0.757 3.243
15 H -0.199 1.199
16 H -0.210 1.210
17 H -0.199 1.199
18 N -0.321 5.321
19 C -0.050 4.050
20 C 0.313 3.687
21 O -0.411 6.411
22 C -0.090 4.090
23 H 0.113 0.887
24 C -0.204 4.204
25 C -0.067 4.067
26 C -0.094 4.094
27 C -0.141 4.141
28 C -0.141 4.141
29 C -0.146 4.146
30 C -0.133 4.133
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.087 0.913
34 H 0.057 0.943
35 H 0.095 0.905
36 H 0.169 0.831
37 H 0.103 0.897
38 H 0.060 0.940
39 H 0.225 0.775
40 H 0.082 0.918
41 H 0.082 0.918
42 H 0.085 0.915
43 H 0.081 0.919
44 H 0.097 0.903
45 H 0.087 0.913
46 H 0.085 0.915
47 H 0.142 0.858
48 H 0.138 0.862
49 H 0.135 0.865
50 H 0.136 0.864
51 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -15.892 11.296 11.672 22.725
hybrid contribution 0.451 0.058 -1.424 1.495
sum -15.441 11.355 10.248 21.734
Atomic orbital electron populations
1.22165 0.94732 1.02871 1.02454 1.21476 0.93887 0.97489 0.85087
0.88313 1.22371 0.89783 1.00963 0.95445 1.60117 1.02967 1.20900
1.45768 1.21670 0.95484 0.98899 0.92106 1.19789 0.88022 0.84669
0.84968 1.90530 1.70479 1.50059 1.35408 1.41852 1.07501 1.45430
1.25256 1.19646 0.81620 1.30112 1.11478 0.87997 1.25252 1.00653
0.96502 0.95483 1.69599 1.36791 1.33617 1.14390 0.85929 0.82173
0.78399 0.77803 1.19859 1.20980 1.19913 1.47469 1.56565 1.08856
1.19208 1.21502 1.01268 0.80311 1.01883 1.20291 0.77119 0.88664
0.82610 1.90700 1.51113 1.70899 1.28415 1.20263 1.00296 0.93294
0.95170 0.88706 1.22047 0.99773 1.02954 0.95584 1.19333 0.95420
0.96352 0.95567 1.21048 0.94739 0.97933 0.95693 1.21157 1.00153
0.97008 0.95785 1.21111 0.95837 0.97304 0.99809 1.21008 0.96420
1.00502 0.96708 1.20953 0.99582 0.97066 0.95747 0.91914 0.92036
0.91271 0.94284 0.90468 0.83094 0.89701 0.93978 0.77520 0.91834
0.91835 0.91535 0.91855 0.90318 0.91300 0.91518 0.85780 0.86154
0.86451 0.86395 0.86456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.12 9.28 37.16 0.34 -0.77 16
2 C 0.13 1.15 2.15 -67.93 -0.15 1.01 16
3 H 0.10 0.84 4.02 -51.93 -0.21 0.63 16
4 C 0.04 0.46 4.80 -3.82 -0.02 0.45 16
5 N -0.66 -9.71 5.74 -115.06 -0.66 -10.37 16
6 C 0.05 0.85 6.15 -4.98 -0.03 0.82 16
7 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16
8 O -0.58 -15.41 15.78 5.54 0.09 -15.32 16
9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16
10 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16
11 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16
12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
13 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16
14 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16
15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
18 N -0.59 -7.13 2.48 -173.93 -0.43 -7.56 16
19 C 0.09 1.12 9.37 59.85 0.56 1.69 16
20 C 0.53 7.53 6.89 -10.99 -0.08 7.46 16
21 O -0.53 -9.69 14.53 5.55 0.08 -9.61 16
22 C -0.07 -0.80 2.05 -92.93 -0.19 -0.99 16
23 H 0.09 0.85 7.24 -51.93 -0.38 0.48 16
24 C -0.15 -1.72 8.10 37.16 0.30 -1.42 16
25 C -0.07 -0.85 4.45 -104.63 -0.47 -1.32 16
26 C -0.08 -1.08 7.93 -39.58 -0.31 -1.39 16
27 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16
28 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16
29 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16
30 C -0.12 -1.27 9.67 -39.58 -0.38 -1.65 16
31 H 0.06 0.43 7.01 -51.93 -0.36 0.06 16
32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
34 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16
35 H 0.08 0.78 7.50 -51.93 -0.39 0.39 16
36 H 0.35 5.28 5.91 -39.29 -0.23 5.05 16
37 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16
39 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16
40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16
41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.07 0.85 7.54 -51.93 -0.39 0.46 16
43 H 0.06 0.59 6.59 -51.93 -0.34 0.24 16
44 H 0.08 1.18 7.64 -51.93 -0.40 0.78 16
45 H 0.07 0.74 3.24 -51.93 -0.17 0.57 16
46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
47 H 0.12 1.96 7.47 -52.48 -0.39 1.57 16
48 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16
49 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16
50 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16
51 H 0.12 1.00 7.95 -52.49 -0.42 0.59 16
LS Contribution 408.35 15.07 6.15 6.15
Total: -1.00 -33.79 408.35 -8.80 -42.59
By element:
Atomic # 1 Polarization: 23.10 SS G_CDS: -7.74 Total: 15.37 kcal
Atomic # 6 Polarization: 2.51 SS G_CDS: -1.94 Total: 0.57 kcal
Atomic # 7 Polarization: -55.41 SS G_CDS: -0.42 Total: -55.84 kcal
Atomic # 8 Polarization: -25.09 SS G_CDS: 0.17 Total: -24.93 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -33.79 -8.80 -42.59 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001319562220.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.029 kcal
(2) G-P(sol) polarization free energy of solvation -33.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.762 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds