Wall clock time and date at job start Wed Apr 1 2020 05:29:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.47056 * 2 1
4 4 C 1.53004 * 109.47085 * 240.00401 * 2 1 3
5 5 N 1.46898 * 109.46991 * 185.36770 * 4 2 1
6 6 C 1.46901 * 110.99844 * 173.75891 * 5 4 2
7 7 C 1.50699 * 109.47259 * 180.02562 * 6 5 4
8 8 O 1.21296 * 120.00021 * 0.02562 * 7 6 5
9 9 N 1.34770 * 120.00320 * 179.97438 * 7 6 5
10 10 C 1.37097 * 120.00216 * 179.97438 * 9 7 6
11 11 H 1.08002 * 120.00119 * 0.02562 * 10 9 7
12 12 C 1.38950 * 119.99813 * 180.02562 * 10 9 7
13 13 N 1.31410 * 120.00516 * 0.02562 * 12 10 9
14 14 Si 1.86812 * 119.99868 * 180.02562 * 12 10 9
15 15 H 1.48493 * 109.46725 * 60.00122 * 14 12 10
16 16 H 1.48500 * 109.46996 * 180.02562 * 14 12 10
17 17 H 1.48498 * 109.46984 * 300.00427 * 14 12 10
18 18 N 1.46501 * 109.47337 * 120.00236 * 2 1 3
19 19 C 1.46498 * 119.99519 * 67.18919 * 18 2 1
20 20 C 1.34777 * 120.00019 * 247.18616 * 18 2 1
21 21 O 1.21288 * 119.99703 * 177.35537 * 20 18 2
22 22 C 1.50694 * 120.00203 * 357.35790 * 20 18 2
23 23 H 1.09004 * 109.46879 * 54.26578 * 22 20 18
24 24 C 1.53001 * 109.47255 * 294.26710 * 22 20 18
25 25 C 1.50694 * 109.47174 * 174.26317 * 22 20 18
26 26 C 1.38237 * 120.00210 * 59.72889 * 25 22 20
27 27 C 1.38234 * 120.00400 * 179.81025 * 26 25 22
28 28 C 1.38237 * 119.99788 * 0.39588 * 27 26 25
29 29 C 1.38232 * 120.00219 * 359.85536 * 28 27 26
30 30 C 1.38237 * 120.00432 * 240.00069 * 25 22 20
31 31 H 1.08996 * 109.47109 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.46947 * 299.99694 * 1 2 3
33 33 H 1.08997 * 109.47456 * 59.99695 * 1 2 3
34 34 H 1.09006 * 109.46758 * 65.37202 * 4 2 1
35 35 H 1.09000 * 109.46980 * 305.36984 * 4 2 1
36 36 H 1.00896 * 111.00550 * 297.71237 * 5 4 2
37 37 H 1.08999 * 109.46989 * 300.00356 * 6 5 4
38 38 H 1.08998 * 109.47192 * 59.99988 * 6 5 4
39 39 H 0.97001 * 119.99778 * 0.02562 * 9 7 6
40 40 H 0.96997 * 120.00225 * 179.97438 * 13 12 10
41 41 H 1.09003 * 109.47101 * 95.09184 * 19 18 2
42 42 H 1.09004 * 109.46983 * 215.08236 * 19 18 2
43 43 H 1.08996 * 109.47696 * 335.08329 * 19 18 2
44 44 H 1.09000 * 109.46608 * 306.48601 * 24 22 20
45 45 H 1.08999 * 109.47085 * 66.48612 * 24 22 20
46 46 H 1.08997 * 109.46940 * 186.49089 * 24 22 20
47 47 H 1.08007 * 119.99695 * 359.97438 * 26 25 22
48 48 H 1.07999 * 119.99923 * 180.23221 * 27 26 25
49 49 H 1.07996 * 119.99581 * 179.83380 * 28 27 26
50 50 H 1.07996 * 120.00191 * 179.97438 * 29 28 27
51 51 H 1.08002 * 119.99856 * 359.97438 * 30 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 7 3.5032 -0.8344 -1.1863
6 6 4.0163 -1.6503 -2.2949
7 6 5.5172 -1.7442 -2.1968
8 8 6.1019 -1.1867 -1.2920
9 7 6.2097 -2.4484 -3.1137
10 6 7.5751 -2.5335 -3.0247
11 1 8.0958 -2.0364 -2.2196
12 6 8.2891 -3.2591 -3.9705
13 7 7.6557 -3.8635 -4.9504
14 14 10.1496 -3.3756 -3.8488
15 1 10.5227 -4.0053 -2.5568
16 1 10.6683 -4.1998 -4.9699
17 1 10.7367 -2.0136 -3.9234
18 7 2.0183 -0.6907 1.1961
19 6 1.7987 -2.1307 1.3513
20 6 2.6697 -0.0012 2.1537
21 8 3.0317 -0.5633 3.1656
22 6 2.9480 1.4680 1.9670
23 1 2.0159 1.9896 1.7496
24 6 3.9226 1.6587 0.8031
25 6 3.5549 2.0284 3.2274
26 6 4.7457 1.5166 3.7080
27 6 5.3045 2.0332 4.8620
28 6 4.6683 3.0562 5.5400
29 6 3.4748 3.5645 5.0623
30 6 2.9180 3.0504 3.9062
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8901
33 1 -0.3634 0.5139 -0.8899
34 1 1.7573 -0.1547 -2.1367
35 1 1.6002 -1.7173 -1.2988
36 1 3.9364 0.0768 -1.1773
37 1 3.5857 -2.6501 -2.2399
38 1 3.7421 -1.1883 -3.2433
39 1 5.7421 -2.8946 -3.8371
40 1 8.1542 -4.3698 -5.6108
41 1 2.6769 -2.6722 0.9993
42 1 1.6274 -2.3609 2.4029
43 1 0.9287 -2.4307 0.7673
44 1 4.8084 1.0449 0.9668
45 1 3.4402 1.3596 -0.1274
46 1 4.2136 2.7072 0.7410
47 1 5.2409 0.7148 3.1803
48 1 6.2368 1.6359 5.2353
49 1 5.1035 3.4580 6.4430
50 1 2.9776 4.3634 5.5923
51 1 1.9856 3.4476 3.5330
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001319562220.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:59
Heat of formation + Delta-G solvation = -59.469017 kcal
Electronic energy + Delta-G solvation = -31238.197767 eV
Core-core repulsion = 27136.772217 eV
Total energy + Delta-G solvation = -4101.425550 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.58223 -40.16374 -39.73221 -38.11263 -36.13119 -35.40286 -35.18339 -33.26777
-32.14680 -31.75979 -30.58230 -28.97540 -27.96432 -26.69324 -25.46353 -24.64200
-23.48999 -22.88506 -21.94002 -21.11705 -20.06875 -19.77425 -18.24017 -18.00134
-17.60167 -16.98464 -16.73400 -16.48330 -16.39083 -16.05557 -15.88070 -15.59515
-15.35175 -15.24690 -14.91081 -14.61109 -14.43182 -14.19114 -14.08644 -14.00733
-13.59454 -13.52644 -13.38541 -13.27571 -13.06975 -12.97958 -12.92584 -12.75401
-12.74213 -12.52680 -12.45392 -12.37203 -12.14076 -11.85928 -11.80527 -11.53777
-11.50704 -10.65595 -10.34454 -10.01708 -9.75523 -9.60884 -9.56307 -9.21934
-8.47779 -5.96046 0.45198 0.55652 1.37635 1.39474 1.50089 1.70328
2.06408 2.14373 2.27805 2.90511 2.94712 3.19833 3.49964 3.55275
3.70910 3.80452 3.97658 4.12146 4.17252 4.24295 4.27381 4.30903
4.33248 4.37999 4.47186 4.51455 4.58859 4.62566 4.66632 4.68750
4.70544 4.78936 4.81656 4.86924 4.90995 5.00150 5.05457 5.14773
5.18673 5.28866 5.37067 5.39451 5.58117 5.64871 5.67081 5.74903
5.88849 6.10975 6.15220 6.41894 6.53116 6.60124 7.12462 7.28466
7.56724 8.12856 8.69393
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010843 B = 0.002739 C = 0.002321
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2581.586480 B =10220.345167 C =12060.271606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.122 3.878
3 H 0.109 0.891
4 C 0.045 3.955
5 N -0.682 5.682
6 C 0.067 3.933
7 C 0.436 3.564
8 O -0.622 6.622
9 N -0.574 5.574
10 C -0.333 4.333
11 H 0.075 0.925
12 C -0.012 4.012
13 N -0.920 5.920
14 Si 0.989 3.011
15 H -0.275 1.275
16 H -0.269 1.269
17 H -0.271 1.271
18 N -0.586 5.586
19 C 0.096 3.904
20 C 0.514 3.486
21 O -0.585 6.585
22 C -0.060 4.060
23 H 0.132 0.868
24 C -0.137 4.137
25 C -0.082 4.082
26 C -0.106 4.106
27 C -0.141 4.141
28 C -0.125 4.125
29 C -0.126 4.126
30 C -0.116 4.116
31 H 0.064 0.936
32 H 0.064 0.936
33 H 0.092 0.908
34 H 0.068 0.932
35 H 0.084 0.916
36 H 0.342 0.658
37 H 0.100 0.900
38 H 0.070 0.930
39 H 0.396 0.604
40 H 0.278 0.722
41 H 0.033 0.967
42 H 0.052 0.948
43 H 0.098 0.902
44 H 0.033 0.967
45 H 0.081 0.919
46 H 0.081 0.919
47 H 0.088 0.912
48 H 0.123 0.877
49 H 0.143 0.857
50 H 0.152 0.848
51 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.300 13.756 9.500 25.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.019 3.981
3 H 0.127 0.873
4 C -0.085 4.085
5 N -0.317 5.317
6 C -0.065 4.065
7 C 0.224 3.776
8 O -0.508 6.508
9 N -0.212 5.212
10 C -0.463 4.463
11 H 0.093 0.907
12 C -0.211 4.211
13 N -0.561 5.561
14 Si 0.813 3.187
15 H -0.201 1.201
16 H -0.193 1.193
17 H -0.196 1.196
18 N -0.317 5.317
19 C -0.047 4.047
20 C 0.303 3.697
21 O -0.466 6.466
22 C -0.081 4.081
23 H 0.150 0.850
24 C -0.194 4.194
25 C -0.082 4.082
26 C -0.124 4.124
27 C -0.160 4.160
28 C -0.143 4.143
29 C -0.144 4.144
30 C -0.134 4.134
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.111 0.889
34 H 0.086 0.914
35 H 0.102 0.898
36 H 0.163 0.837
37 H 0.119 0.881
38 H 0.088 0.912
39 H 0.230 0.770
40 H 0.087 0.913
41 H 0.052 0.948
42 H 0.071 0.929
43 H 0.116 0.884
44 H 0.053 0.947
45 H 0.099 0.901
46 H 0.100 0.900
47 H 0.106 0.894
48 H 0.141 0.859
49 H 0.161 0.839
50 H 0.170 0.830
51 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -18.678 13.158 10.872 25.302
hybrid contribution 1.263 -0.508 -1.153 1.784
sum -17.415 12.649 9.719 23.617
Atomic orbital electron populations
1.22120 0.91985 1.03499 1.03814 1.21749 0.95837 0.97413 0.83136
0.87337 1.22522 0.86697 1.02170 0.97079 1.60098 1.05751 1.20530
1.45295 1.21504 0.90234 1.00594 0.94169 1.20995 0.90824 0.82537
0.83285 1.90510 1.72282 1.51239 1.36786 1.41921 1.06859 1.46323
1.26085 1.19582 0.83297 1.31615 1.11792 0.90662 1.25984 1.04697
0.95637 0.94814 1.69653 1.38255 1.33570 1.14579 0.85047 0.77125
0.78535 0.77991 1.20073 1.19296 1.19637 1.47631 1.55582 1.08798
1.19645 1.21445 1.01285 0.80424 1.01558 1.20878 0.76576 0.89907
0.82349 1.90669 1.53148 1.72083 1.30669 1.20277 1.01540 0.91716
0.94605 0.84985 1.21947 0.98230 1.02960 0.96261 1.19540 0.95095
0.97191 0.96414 1.20953 0.96276 0.98269 0.96933 1.21330 1.00788
0.98074 0.95758 1.21444 0.96116 0.96408 1.00347 1.21466 0.95917
1.00644 0.96386 1.21334 1.00404 0.96047 0.95593 0.91700 0.91688
0.88885 0.91400 0.89752 0.83678 0.88146 0.91191 0.76986 0.91297
0.94775 0.92897 0.88389 0.94747 0.90071 0.89974 0.89415 0.85896
0.83896 0.83048 0.83255
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.48 9.28 71.98 0.67 -0.81 16
2 C 0.12 1.91 2.15 44.99 0.10 2.01 16
3 H 0.11 1.50 4.02 -2.38 -0.01 1.49 16
4 C 0.04 0.79 4.80 86.30 0.41 1.20 16
5 N -0.68 -19.40 5.74 -517.92 -2.97 -22.37 16
6 C 0.07 2.17 6.15 85.56 0.53 2.69 16
7 C 0.44 20.57 7.82 87.66 0.69 21.25 16
8 O -0.62 -34.63 15.78 -3.08 -0.05 -34.68 16
9 N -0.57 -29.48 5.29 -306.99 -1.62 -31.10 16
10 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16
11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16
12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16
13 N -0.92 -49.80 13.05 21.66 0.28 -49.51 16
14 Si 0.99 43.61 29.55 68.60 2.03 45.64 16
15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
18 N -0.59 -13.87 2.48 -822.59 -2.04 -15.90 16
19 C 0.10 2.33 9.37 127.77 1.20 3.52 16
20 C 0.51 15.14 6.89 87.66 0.60 15.74 16
21 O -0.59 -22.73 14.53 -3.05 -0.04 -22.78 16
22 C -0.06 -1.38 2.05 -12.29 -0.03 -1.41 16
23 H 0.13 1.97 7.24 -2.38 -0.02 1.95 16
24 C -0.14 -3.27 8.10 71.98 0.58 -2.68 16
25 C -0.08 -2.12 4.45 -19.87 -0.09 -2.21 16
26 C -0.11 -3.28 7.93 22.27 0.18 -3.11 16
27 C -0.14 -3.75 10.05 22.27 0.22 -3.53 16
28 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16
29 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16
30 C -0.12 -2.30 9.67 22.27 0.22 -2.09 16
31 H 0.06 0.62 7.01 -2.39 -0.02 0.60 16
32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16
33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
34 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16
35 H 0.08 1.41 7.50 -2.39 -0.02 1.39 16
36 H 0.34 10.30 5.91 -89.70 -0.53 9.77 16
37 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16
38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
39 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16
40 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16
41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16
42 H 0.05 1.42 7.54 -2.38 -0.02 1.40 16
43 H 0.10 1.64 6.59 -2.39 -0.02 1.62 16
44 H 0.03 1.12 7.64 -2.39 -0.02 1.10 16
45 H 0.08 1.68 3.24 -2.39 -0.01 1.68 16
46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
47 H 0.09 3.24 7.47 -2.91 -0.02 3.22 16
48 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16
49 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16
50 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16
51 H 0.15 1.93 7.95 -2.91 -0.02 1.91 16
Total: -1.00 -79.47 408.35 2.29 -77.19
By element:
Atomic # 1 Polarization: 46.18 SS G_CDS: -0.31 Total: 45.87 kcal
Atomic # 6 Polarization: 0.63 SS G_CDS: 7.01 Total: 7.64 kcal
Atomic # 7 Polarization: -112.54 SS G_CDS: -6.35 Total: -118.89 kcal
Atomic # 8 Polarization: -57.36 SS G_CDS: -0.09 Total: -57.45 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal
Total: -79.47 2.29 -77.19 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001319562220.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.719 kcal
(2) G-P(sol) polarization free energy of solvation -79.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds