Wall clock time and date at job start Wed Apr 1 2020 04:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46846 * 2 1 4 4 C 1.53001 * 109.47041 * 240.00578 * 2 1 3 5 5 C 1.50701 * 109.47029 * 64.99499 * 4 2 1 6 6 O 1.21278 * 120.00328 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99707 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99843 * 184.68364 * 7 5 4 9 9 C 1.52996 * 109.49710 * 57.79345 * 8 7 5 10 10 O 1.42898 * 109.47257 * 55.35415 * 9 8 7 11 11 C 1.53035 * 109.49893 * 297.72495 * 8 7 5 12 12 C 1.53042 * 109.53949 * 301.41803 * 11 8 7 13 13 C 1.53193 * 109.30838 * 298.62996 * 12 11 8 14 14 N 1.46926 * 108.77791 * 54.63910 * 13 12 11 15 15 C 1.36928 * 120.63275 * 126.40564 * 14 13 12 16 16 H 1.08003 * 120.00372 * 209.59968 * 15 14 13 17 17 C 1.38815 * 119.99964 * 29.60849 * 15 14 13 18 18 N 1.31620 * 120.00089 * 11.47467 * 17 15 14 19 19 Si 1.86806 * 119.99855 * 191.48083 * 17 15 14 20 20 H 1.48493 * 109.47464 * 59.99690 * 19 17 15 21 21 H 1.48499 * 109.46650 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47001 * 299.99510 * 19 17 15 23 23 C 1.46930 * 118.73553 * 306.38909 * 14 13 12 24 24 C 1.50700 * 109.47103 * 120.00193 * 2 1 3 25 25 C 1.38647 * 120.78599 * 59.72537 * 24 2 1 26 26 C 1.38206 * 119.15803 * 179.75332 * 25 24 2 27 27 N 1.31873 * 120.76454 * 0.52954 * 26 25 24 28 28 C 1.31868 * 121.72396 * 359.74050 * 27 26 25 29 29 C 1.38200 * 120.76861 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47302 * 59.99360 * 1 2 3 31 31 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47195 * 299.99615 * 1 2 3 33 33 H 1.09002 * 109.46985 * 304.99698 * 4 2 1 34 34 H 1.08997 * 109.46857 * 185.00018 * 4 2 1 35 35 H 0.97003 * 120.00206 * 4.95381 * 7 5 4 36 36 H 1.09000 * 109.46824 * 175.35251 * 9 8 7 37 37 H 1.08997 * 109.46884 * 295.35223 * 9 8 7 38 38 H 0.96704 * 114.00154 * 179.97438 * 10 9 8 39 39 H 1.09005 * 109.45804 * 61.43006 * 11 8 7 40 40 H 1.08999 * 109.46257 * 181.39025 * 11 8 7 41 41 H 1.09001 * 109.49792 * 58.58150 * 12 11 8 42 42 H 1.08999 * 109.49439 * 178.68122 * 12 11 8 43 43 H 1.09006 * 109.58354 * 174.42263 * 13 12 11 44 44 H 1.08997 * 109.59005 * 294.70310 * 13 12 11 45 45 H 0.96996 * 119.99979 * 180.02562 * 18 17 15 46 46 H 1.08994 * 109.58310 * 293.82226 * 23 14 13 47 47 H 1.08997 * 109.58295 * 173.39353 * 23 14 13 48 48 H 1.07999 * 120.42369 * 359.97438 * 25 24 2 49 49 H 1.08004 * 119.62153 * 180.24452 * 26 25 24 50 50 H 1.08002 * 119.61431 * 180.02562 * 28 27 26 51 51 H 1.07993 * 120.42419 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9852 -0.3911 -3.7001 8 6 1.6879 0.4158 -4.8862 9 6 2.3518 1.7875 -4.7501 10 8 3.7521 1.6183 -4.5208 11 6 0.1735 0.5921 -5.0177 12 6 -0.4947 -0.7810 -5.1200 13 6 0.0184 -1.5020 -6.3704 14 7 1.4862 -1.5474 -6.3214 15 6 2.1521 -2.7371 -6.4483 16 1 3.1076 -2.8755 -5.9643 17 6 1.5991 -3.7653 -7.1993 18 7 0.5579 -3.5312 -7.9697 19 14 2.3327 -5.4813 -7.1165 20 1 2.2661 -5.9813 -5.7198 21 1 1.5653 -6.3910 -8.0045 22 1 3.7496 -5.4358 -7.5589 23 6 2.2258 -0.2918 -6.1340 24 6 2.0324 -0.7104 1.2304 25 6 1.7028 -2.0359 1.4688 26 6 2.1861 -2.6560 2.6054 27 7 2.9431 -1.9989 3.4623 28 6 3.2720 -0.7364 3.2706 29 6 2.8305 -0.0525 2.1537 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 3.1263 -0.7993 -1.2056 35 1 2.4261 -1.2498 -3.7958 36 1 2.2001 2.3571 -5.6670 37 1 1.9085 2.3241 -3.9114 38 1 4.2381 2.4488 -4.4248 39 1 -0.2083 1.1173 -4.1421 40 1 -0.0483 1.1716 -5.9138 41 1 -0.2529 -1.3700 -4.2353 42 1 -1.5752 -0.6554 -5.1901 43 1 -0.3779 -2.5172 -6.3953 44 1 -0.3031 -0.9625 -7.2612 45 1 0.1713 -4.2498 -8.4941 46 1 2.0865 0.3479 -7.0054 47 1 3.2860 -0.5084 -6.0028 48 1 1.0792 -2.5780 0.7734 49 1 1.9373 -3.6895 2.7965 50 1 3.8944 -0.2311 3.9944 51 1 3.1036 0.9813 2.0021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325853985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:44 Heat of formation + Delta-G solvation = -57.207327 kcal Electronic energy + Delta-G solvation = -32052.845403 eV Core-core repulsion = 27951.517927 eV Total energy + Delta-G solvation = -4101.327476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60092 -41.01996 -39.14236 -37.39177 -36.55906 -35.39337 -33.87555 -32.33633 -32.21729 -31.96854 -31.25131 -28.52660 -27.28589 -26.56579 -25.27199 -24.31316 -23.93398 -22.77745 -21.97481 -20.86533 -20.06207 -18.67023 -18.36439 -18.11148 -17.33956 -17.19866 -16.88480 -16.54374 -16.39704 -16.26738 -15.76991 -15.37991 -15.22065 -15.01580 -14.87306 -14.68138 -14.45951 -14.32773 -14.20586 -14.08594 -13.90142 -13.46695 -13.33148 -13.08610 -12.85221 -12.77564 -12.71080 -12.49830 -12.35492 -12.23473 -12.21344 -11.95314 -11.74917 -11.71226 -11.45102 -11.20732 -10.96599 -10.52813 -10.49901 -10.38386 -10.23715 -10.03694 -9.72702 -8.63628 -7.83543 -5.33716 0.25246 0.32243 1.50385 1.50935 1.57436 1.84881 2.37553 2.52341 2.91512 3.32405 3.33852 3.54213 3.65103 3.67434 3.72896 3.93806 4.03296 4.10391 4.18857 4.25188 4.25573 4.28403 4.29908 4.39088 4.50261 4.56883 4.65615 4.69495 4.75691 4.78547 4.81107 4.89841 4.93207 4.94867 4.98338 5.03931 5.09504 5.11156 5.18299 5.21400 5.31191 5.41859 5.54013 5.57120 5.66190 5.76546 5.82509 5.84047 6.41823 6.82209 6.94470 7.07299 7.17303 7.45952 7.85540 8.38660 9.21606 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010418 B = 0.003257 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.890944 B = 8595.771092 C =10039.161759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.024 4.024 3 H 0.084 0.916 4 C -0.128 4.128 5 C 0.518 3.482 6 O -0.567 6.567 7 N -0.693 5.693 8 C 0.172 3.828 9 C 0.077 3.923 10 O -0.577 6.577 11 C -0.112 4.112 12 C -0.121 4.121 13 C 0.177 3.823 14 N -0.600 5.600 15 C -0.257 4.257 16 H 0.071 0.929 17 C -0.047 4.047 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.278 1.278 23 C 0.152 3.848 24 C -0.036 4.036 25 C -0.171 4.171 26 C 0.088 3.912 27 N -0.518 5.518 28 C 0.089 3.911 29 C -0.172 4.172 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.402 0.598 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.391 0.609 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.058 0.942 44 H -0.007 1.007 45 H 0.248 0.752 46 H 0.023 0.977 47 H 0.059 0.941 48 H 0.145 0.855 49 H 0.171 0.829 50 H 0.176 0.824 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 9.188 17.622 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 H 0.103 0.897 4 C -0.168 4.168 5 C 0.306 3.694 6 O -0.448 6.448 7 N -0.342 5.342 8 C 0.084 3.916 9 C -0.003 4.003 10 O -0.385 6.385 11 C -0.150 4.150 12 C -0.160 4.160 13 C 0.052 3.948 14 N -0.323 5.323 15 C -0.387 4.387 16 H 0.089 0.911 17 C -0.243 4.243 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.201 1.201 21 H -0.226 1.226 22 H -0.204 1.204 23 C 0.026 3.974 24 C -0.044 4.044 25 C -0.191 4.191 26 C -0.068 4.068 27 N -0.227 5.227 28 C -0.067 4.067 29 C -0.192 4.192 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.237 0.763 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.240 0.760 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.011 0.989 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.078 0.922 48 H 0.163 0.837 49 H 0.188 0.812 50 H 0.193 0.807 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.812 8.735 18.273 20.448 hybrid contribution 0.130 -0.417 -1.453 1.518 sum 2.942 8.318 16.819 18.993 Atomic orbital electron populations 1.21884 0.93596 1.02037 1.02554 1.19762 0.96578 0.98781 0.89129 0.89748 1.21709 1.03537 1.00332 0.91253 1.20765 0.78290 0.85560 0.84790 1.90545 1.41160 1.26213 1.86910 1.45829 1.60300 1.22910 1.05130 1.20755 0.94474 0.90051 0.86364 1.22434 0.81694 0.95823 1.00303 1.86458 1.19733 1.36702 1.95561 1.21685 0.93861 0.97481 1.02010 1.21897 0.98788 0.96165 0.99177 1.20633 0.83275 0.98759 0.92183 1.44186 1.01440 1.02116 1.84553 1.19454 1.04251 0.90815 1.24188 0.91145 1.25822 0.99308 1.02648 0.96490 1.70140 1.26305 1.32138 1.29637 0.85368 0.77696 0.80055 0.77438 1.20062 1.22574 1.20386 1.21104 0.95551 0.87637 0.93138 1.20407 0.94396 0.94149 0.95434 1.22211 1.01903 0.95390 0.99546 1.23096 0.92846 1.00802 0.90085 1.67696 1.13434 1.10178 1.31430 1.23148 0.96988 0.90154 0.96430 1.22319 0.99088 1.02409 0.95389 0.91728 0.92475 0.92486 0.88067 0.88095 0.76297 0.92535 0.92065 0.76019 0.90520 0.91961 0.93227 0.92124 0.92330 0.98870 0.94239 0.95909 0.92205 0.83706 0.81154 0.80727 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.75 71.98 0.63 -2.36 16 2 C -0.02 -0.46 2.24 -11.54 -0.03 -0.49 16 3 H 0.08 1.74 7.76 -2.39 -0.02 1.72 16 4 C -0.13 -2.72 4.93 29.85 0.15 -2.57 16 5 C 0.52 14.34 6.96 87.66 0.61 14.95 16 6 O -0.57 -17.51 10.27 -3.02 -0.03 -17.54 16 7 N -0.69 -21.30 3.96 -422.57 -1.67 -22.98 16 8 C 0.17 5.63 0.45 3.68 0.00 5.63 16 9 C 0.08 2.14 5.61 71.98 0.40 2.54 16 10 O -0.58 -15.09 13.06 -148.98 -1.95 -17.04 16 11 C -0.11 -3.76 4.51 30.62 0.14 -3.62 16 12 C -0.12 -4.55 5.93 30.67 0.18 -4.37 16 13 C 0.18 8.30 5.27 86.36 0.46 8.76 16 14 N -0.60 -28.24 2.86 -699.08 -2.00 -30.24 16 15 C -0.26 -13.23 9.60 84.04 0.81 -12.42 16 16 H 0.07 3.48 7.86 -2.91 -0.02 3.46 16 17 C -0.05 -2.53 5.04 84.86 0.43 -2.10 16 18 N -0.94 -53.73 10.96 21.65 0.24 -53.50 16 19 Si 0.97 43.21 29.57 68.60 2.03 45.24 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 C 0.15 6.03 5.07 86.36 0.44 6.47 16 24 C -0.04 -0.65 4.80 -19.67 -0.09 -0.74 16 25 C -0.17 -3.03 8.90 22.36 0.20 -2.83 16 26 C 0.09 1.62 11.18 84.68 0.95 2.57 16 27 N -0.52 -10.91 10.36 -195.84 -2.03 -12.94 16 28 C 0.09 1.55 11.18 84.68 0.95 2.49 16 29 C -0.17 -2.86 9.76 22.36 0.22 -2.64 16 30 H 0.06 1.65 5.95 -2.39 -0.01 1.64 16 31 H 0.06 1.10 7.46 -2.39 -0.02 1.09 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 2.00 7.68 -2.39 -0.02 1.98 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.40 13.02 8.43 -92.71 -0.78 12.23 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.76 6.32 -2.39 -0.02 1.74 16 38 H 0.39 6.42 9.12 -74.05 -0.68 5.74 16 39 H 0.08 2.55 6.22 -2.38 -0.01 2.54 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.90 7.53 -2.39 -0.02 1.88 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 3.13 5.99 -2.38 -0.01 3.12 16 44 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 46 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 2.43 7.77 -2.39 -0.02 2.41 16 48 H 0.15 2.19 7.35 -2.91 -0.02 2.17 16 49 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 50 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 51 H 0.15 1.89 8.01 -2.91 -0.02 1.86 16 Total: -1.00 -65.44 397.41 0.51 -64.93 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: -0.51 Total: 34.79 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 6.43 Total: 9.27 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -5.47 Total: -119.65 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.98 Total: -34.58 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -65.44 0.51 -64.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325853985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.726 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds