Wall clock time and date at job start Wed Apr 1 2020 04:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47087 * 2 1 4 4 C 1.53000 * 109.47351 * 119.99943 * 2 1 3 5 5 C 1.50693 * 109.47012 * 295.00213 * 4 2 1 6 6 O 1.21283 * 120.00263 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00004 * 179.97438 * 5 4 2 8 8 C 1.46507 * 120.00008 * 174.93994 * 7 5 4 9 9 C 1.53000 * 109.49441 * 63.69985 * 8 7 5 10 10 O 1.42898 * 109.47491 * 55.67094 * 9 8 7 11 11 C 1.53038 * 109.49868 * 303.63471 * 8 7 5 12 12 C 1.53040 * 109.53922 * 301.41079 * 11 8 7 13 13 C 1.53196 * 109.31129 * 298.64020 * 12 11 8 14 14 N 1.46924 * 108.77806 * 54.63087 * 13 12 11 15 15 C 1.36938 * 120.62860 * 126.37009 * 14 13 12 16 16 H 1.08002 * 120.00111 * 211.78251 * 15 14 13 17 17 C 1.38813 * 120.00277 * 31.78393 * 15 14 13 18 18 N 1.31625 * 119.99663 * 10.20905 * 17 15 14 19 19 Si 1.86798 * 120.00123 * 190.21334 * 17 15 14 20 20 H 1.48497 * 109.47249 * 60.00284 * 19 17 15 21 21 H 1.48507 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47225 * 299.99700 * 19 17 15 23 23 C 1.46922 * 118.74144 * 306.39449 * 14 13 12 24 24 C 1.50699 * 109.47214 * 240.00131 * 2 1 3 25 25 C 1.38652 * 120.78836 * 299.71768 * 24 2 1 26 26 C 1.38209 * 119.16128 * 179.75545 * 25 24 2 27 27 N 1.31875 * 120.76375 * 0.52945 * 26 25 24 28 28 C 1.31865 * 121.72436 * 359.74690 * 27 26 25 29 29 C 1.38213 * 120.76736 * 359.97157 * 28 27 26 30 30 H 1.09008 * 109.47083 * 60.00276 * 1 2 3 31 31 H 1.08997 * 109.47043 * 300.00394 * 1 2 3 32 32 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46736 * 54.99864 * 4 2 1 34 34 H 1.08998 * 109.47119 * 175.00087 * 4 2 1 35 35 H 0.96998 * 120.00217 * 354.94980 * 7 5 4 36 36 H 1.09002 * 109.47201 * 175.67060 * 9 8 7 37 37 H 1.09004 * 109.47063 * 295.67089 * 9 8 7 38 38 H 0.96699 * 114.00619 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.45882 * 61.43596 * 11 8 7 40 40 H 1.08999 * 109.45921 * 181.39481 * 11 8 7 41 41 H 1.09006 * 109.49320 * 58.58640 * 12 11 8 42 42 H 1.08994 * 109.49919 * 178.68450 * 12 11 8 43 43 H 1.09000 * 109.58195 * 174.42081 * 13 12 11 44 44 H 1.09000 * 109.58388 * 294.70013 * 13 12 11 45 45 H 0.96997 * 119.99808 * 180.02562 * 18 17 15 46 46 H 1.09004 * 109.58415 * 293.82059 * 23 14 13 47 47 H 1.08992 * 109.58945 * 173.39424 * 23 14 13 48 48 H 1.08000 * 120.42080 * 0.02562 * 25 24 2 49 49 H 1.07998 * 119.62150 * 180.29538 * 26 25 24 50 50 H 1.07999 * 119.61843 * 180.02562 * 28 27 26 51 51 H 1.07996 * 120.41882 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0117 1.0874 2.3632 7 7 1.9845 -0.3919 3.7001 8 6 1.6948 0.4187 4.8856 9 6 0.1806 0.5754 5.0394 10 8 -0.4299 -0.7158 5.0844 11 6 2.3381 1.7986 4.7306 12 6 3.8487 1.6410 4.5431 13 6 4.4453 0.9657 5.7820 14 7 3.7321 -0.2961 6.0225 15 6 4.4199 -1.4739 6.1451 16 1 3.9697 -2.3989 5.8166 17 6 5.6959 -1.4788 6.6917 18 7 6.1666 -0.3962 7.2739 19 14 6.7450 -3.0217 6.6008 20 1 6.9626 -3.3894 5.1786 21 1 8.0554 -2.7685 7.2521 22 1 6.0514 -4.1337 7.2991 23 6 2.2669 -0.2704 6.1284 24 6 2.0324 -0.7104 -1.2305 25 6 1.7122 -2.0392 -1.4632 26 6 2.1869 -2.6562 -2.6052 27 7 2.9439 -1.9990 -3.4620 28 6 3.2728 -0.7365 -3.2702 29 6 2.8304 -0.0523 -2.1538 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7994 1.2055 35 1 2.4234 -1.2516 3.7958 36 1 -0.0372 1.1126 5.9625 37 1 -0.2147 1.1348 4.1915 38 1 -1.3918 -0.6930 5.1807 39 1 1.9146 2.3010 3.8609 40 1 2.1431 2.3925 5.6235 41 1 4.0440 1.0264 3.6642 42 1 4.3031 2.6226 4.4094 43 1 5.5026 0.7615 5.6133 44 1 4.3330 1.6216 6.6453 45 1 7.0584 -0.3996 7.6555 46 1 1.9747 0.2836 7.0205 47 1 1.8870 -1.2902 6.1883 48 1 1.0962 -2.5840 -0.7632 49 1 1.9381 -3.6896 -2.7963 50 1 3.8944 -0.2309 -3.9944 51 1 3.1029 0.9817 -2.0025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325853988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:48 Heat of formation + Delta-G solvation = -37.855611 kcal Electronic energy + Delta-G solvation = -32066.406760 eV Core-core repulsion = 27965.918438 eV Total energy + Delta-G solvation = -4100.488322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.59813 -39.98825 -37.81467 -36.05570 -35.61690 -33.84564 -32.32909 -31.43731 -31.06424 -30.51980 -29.96026 -27.52950 -25.45720 -25.07979 -24.45094 -23.57474 -22.25287 -21.55605 -20.59269 -19.76300 -18.70816 -17.38818 -16.98736 -16.76138 -16.42441 -16.26862 -15.73739 -15.35604 -15.14374 -14.85551 -14.47255 -14.20232 -14.05424 -13.82744 -13.68958 -13.58068 -13.31647 -13.15560 -12.87305 -12.71717 -12.39111 -12.32862 -11.98666 -11.91555 -11.51724 -11.47990 -11.34656 -11.18982 -11.01030 -10.88891 -10.78829 -10.45798 -10.19738 -10.11055 -9.83155 -9.71917 -9.67394 -9.61457 -9.54928 -9.31804 -9.01236 -8.52295 -8.44722 -6.67313 -5.83629 -3.33410 0.97125 1.08973 2.99755 3.33748 3.39661 3.39944 3.53433 3.68897 4.29438 4.41576 4.44592 4.49280 4.52782 4.85729 4.95557 4.98625 5.02388 5.10213 5.29863 5.32281 5.35884 5.49991 5.54149 5.56158 5.58946 5.60692 5.65133 5.68008 5.77620 5.80627 5.90253 5.94885 5.99459 6.02761 6.25394 6.28821 6.33390 6.41280 6.48213 6.54203 6.63710 6.68949 6.78920 6.87940 7.10990 7.37245 7.65830 7.72993 7.80553 7.83548 8.06432 8.41468 8.65939 9.16400 9.76848 10.35347 11.23843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.003392 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.545639 B = 8251.722450 C = 9885.769858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.518 3.482 6 O -0.553 6.553 7 N -0.687 5.687 8 C 0.167 3.833 9 C 0.067 3.933 10 O -0.565 6.565 11 C -0.120 4.120 12 C -0.136 4.136 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.257 4.257 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.148 3.852 24 C -0.028 4.028 25 C -0.168 4.168 26 C 0.097 3.903 27 N -0.493 5.493 28 C 0.098 3.902 29 C -0.170 4.170 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.405 0.595 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.369 0.631 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.255 0.745 46 H 0.030 0.970 47 H 0.066 0.934 48 H 0.134 0.866 49 H 0.154 0.846 50 H 0.154 0.846 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 1.164 -14.156 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.054 4.054 3 H 0.108 0.892 4 C -0.176 4.176 5 C 0.305 3.695 6 O -0.433 6.433 7 N -0.336 5.336 8 C 0.079 3.921 9 C -0.012 4.012 10 O -0.369 6.369 11 C -0.158 4.158 12 C -0.175 4.175 13 C 0.045 3.955 14 N -0.310 5.310 15 C -0.387 4.387 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.021 3.979 24 C -0.036 4.036 25 C -0.188 4.188 26 C -0.059 4.059 27 N -0.202 5.202 28 C -0.059 4.059 29 C -0.190 4.190 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.240 0.760 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.214 0.786 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.084 0.916 48 H 0.152 0.848 49 H 0.171 0.829 50 H 0.171 0.829 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.483 1.280 -14.912 18.273 hybrid contribution 0.036 -0.529 0.978 1.112 sum -10.446 0.751 -13.935 17.432 Atomic orbital electron populations 1.21937 0.93309 1.01734 1.03327 1.19904 0.96937 0.99272 0.89251 0.89176 1.21724 1.03133 1.00192 0.92516 1.20314 0.79026 0.85602 0.84590 1.90546 1.40722 1.25326 1.86734 1.45786 1.59869 1.22936 1.05005 1.20956 0.91211 0.92433 0.87498 1.22658 0.93899 0.84653 0.99968 1.86506 1.24047 1.29304 1.97042 1.21743 0.97039 0.95105 1.01959 1.22106 0.94310 0.99513 1.01587 1.20814 0.97706 0.85697 0.91282 1.43990 0.99234 1.04792 1.82993 1.19082 0.98331 0.86447 1.34824 0.91880 1.25168 0.99541 0.97055 0.97328 1.69968 1.17626 1.27623 1.39358 0.86363 0.79689 0.82855 0.77737 1.20990 1.21621 1.20825 1.21096 0.86283 0.98790 0.91777 1.20411 0.93850 0.93877 0.95473 1.22041 1.02086 0.95313 0.99323 1.22747 0.93127 0.99887 0.90162 1.67665 1.12499 1.09228 1.30801 1.22745 0.96881 0.90406 0.95867 1.22124 0.99423 1.01704 0.95716 0.93078 0.89681 0.93160 0.89078 0.88874 0.75981 0.93781 0.92030 0.78557 0.90975 0.92196 0.92930 0.93408 0.89492 0.96517 0.93503 0.95250 0.91599 0.84818 0.82899 0.82895 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.76 37.16 0.33 -1.23 16 2 C -0.03 -0.38 2.24 -91.77 -0.21 -0.58 16 3 H 0.09 1.06 7.76 -51.93 -0.40 0.66 16 4 C -0.14 -1.59 4.93 -27.89 -0.14 -1.72 16 5 C 0.52 7.63 6.82 -10.99 -0.07 7.55 16 6 O -0.55 -9.00 10.27 5.55 0.06 -8.94 16 7 N -0.69 -11.00 3.98 -47.50 -0.19 -11.19 16 8 C 0.17 2.84 0.45 -131.70 -0.06 2.78 16 9 C 0.07 1.00 5.71 37.16 0.21 1.21 16 10 O -0.57 -7.96 13.06 -35.23 -0.46 -8.42 16 11 C -0.12 -2.09 4.42 -26.69 -0.12 -2.21 16 12 C -0.14 -2.60 5.93 -26.61 -0.16 -2.76 16 13 C 0.17 3.94 5.25 -3.71 -0.02 3.92 16 14 N -0.59 -13.79 2.90 -172.32 -0.50 -14.29 16 15 C -0.26 -6.63 9.58 -15.06 -0.14 -6.78 16 16 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 17 C 0.01 0.22 5.06 -17.43 -0.09 0.13 16 18 N -0.90 -25.34 11.06 55.49 0.61 -24.73 16 19 Si 0.90 20.99 29.57 -169.99 -5.03 15.97 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.15 2.97 5.05 -3.71 -0.02 2.95 16 24 C -0.03 -0.29 4.80 -104.32 -0.50 -0.79 16 25 C -0.17 -1.62 8.89 -39.44 -0.35 -1.97 16 26 C 0.10 0.97 11.18 -17.54 -0.20 0.78 16 27 N -0.49 -5.69 10.36 -13.25 -0.14 -5.82 16 28 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 29 C -0.17 -1.68 9.76 -39.44 -0.39 -2.06 16 30 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 32 H 0.05 0.48 7.50 -51.93 -0.39 0.09 16 33 H 0.09 0.94 7.65 -51.93 -0.40 0.54 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.41 6.72 8.48 -40.82 -0.35 6.37 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.95 6.40 -51.93 -0.33 0.61 16 38 H 0.37 3.48 9.12 45.56 0.42 3.90 16 39 H 0.07 1.27 6.13 -51.93 -0.32 0.95 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.03 7.41 -51.93 -0.38 0.65 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.26 6.12 -51.93 -0.32 1.95 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.36 7.76 -51.93 -0.40 0.96 16 48 H 0.13 1.07 7.35 -52.49 -0.39 0.69 16 49 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 50 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 51 H 0.13 1.10 8.01 -52.49 -0.42 0.68 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -30.72 397.43 -9.11 -39.83 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.34 Total: 11.59 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.11 Total: 0.01 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.21 Total: -56.03 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.40 Total: -17.36 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.72 -9.11 -39.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325853988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.977 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds