Wall clock time and date at job start Wed Apr 1 2020 04:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47087 * 2 1 4 4 C 1.53000 * 109.47351 * 119.99943 * 2 1 3 5 5 C 1.50693 * 109.47012 * 295.00213 * 4 2 1 6 6 O 1.21283 * 120.00263 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00004 * 179.97438 * 5 4 2 8 8 C 1.46507 * 120.00008 * 174.93994 * 7 5 4 9 9 C 1.53000 * 109.49441 * 63.69985 * 8 7 5 10 10 O 1.42898 * 109.47491 * 55.67094 * 9 8 7 11 11 C 1.53038 * 109.49868 * 303.63471 * 8 7 5 12 12 C 1.53040 * 109.53922 * 301.41079 * 11 8 7 13 13 C 1.53196 * 109.31129 * 298.64020 * 12 11 8 14 14 N 1.46924 * 108.77806 * 54.63087 * 13 12 11 15 15 C 1.36938 * 120.62860 * 126.37009 * 14 13 12 16 16 H 1.08002 * 120.00111 * 211.78251 * 15 14 13 17 17 C 1.38813 * 120.00277 * 31.78393 * 15 14 13 18 18 N 1.31625 * 119.99663 * 10.20905 * 17 15 14 19 19 Si 1.86798 * 120.00123 * 190.21334 * 17 15 14 20 20 H 1.48497 * 109.47249 * 60.00284 * 19 17 15 21 21 H 1.48507 * 109.47098 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47225 * 299.99700 * 19 17 15 23 23 C 1.46922 * 118.74144 * 306.39449 * 14 13 12 24 24 C 1.50699 * 109.47214 * 240.00131 * 2 1 3 25 25 C 1.38652 * 120.78836 * 299.71768 * 24 2 1 26 26 C 1.38209 * 119.16128 * 179.75545 * 25 24 2 27 27 N 1.31875 * 120.76375 * 0.52945 * 26 25 24 28 28 C 1.31865 * 121.72436 * 359.74690 * 27 26 25 29 29 C 1.38213 * 120.76736 * 359.97157 * 28 27 26 30 30 H 1.09008 * 109.47083 * 60.00276 * 1 2 3 31 31 H 1.08997 * 109.47043 * 300.00394 * 1 2 3 32 32 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46736 * 54.99864 * 4 2 1 34 34 H 1.08998 * 109.47119 * 175.00087 * 4 2 1 35 35 H 0.96998 * 120.00217 * 354.94980 * 7 5 4 36 36 H 1.09002 * 109.47201 * 175.67060 * 9 8 7 37 37 H 1.09004 * 109.47063 * 295.67089 * 9 8 7 38 38 H 0.96699 * 114.00619 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.45882 * 61.43596 * 11 8 7 40 40 H 1.08999 * 109.45921 * 181.39481 * 11 8 7 41 41 H 1.09006 * 109.49320 * 58.58640 * 12 11 8 42 42 H 1.08994 * 109.49919 * 178.68450 * 12 11 8 43 43 H 1.09000 * 109.58195 * 174.42081 * 13 12 11 44 44 H 1.09000 * 109.58388 * 294.70013 * 13 12 11 45 45 H 0.96997 * 119.99808 * 180.02562 * 18 17 15 46 46 H 1.09004 * 109.58415 * 293.82059 * 23 14 13 47 47 H 1.08992 * 109.58945 * 173.39424 * 23 14 13 48 48 H 1.08000 * 120.42080 * 0.02562 * 25 24 2 49 49 H 1.07998 * 119.62150 * 180.29538 * 26 25 24 50 50 H 1.07999 * 119.61843 * 180.02562 * 28 27 26 51 51 H 1.07996 * 120.41882 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0117 1.0874 2.3632 7 7 1.9845 -0.3919 3.7001 8 6 1.6948 0.4187 4.8856 9 6 0.1806 0.5754 5.0394 10 8 -0.4299 -0.7158 5.0844 11 6 2.3381 1.7986 4.7306 12 6 3.8487 1.6410 4.5431 13 6 4.4453 0.9657 5.7820 14 7 3.7321 -0.2961 6.0225 15 6 4.4199 -1.4739 6.1451 16 1 3.9697 -2.3989 5.8166 17 6 5.6959 -1.4788 6.6917 18 7 6.1666 -0.3962 7.2739 19 14 6.7450 -3.0217 6.6008 20 1 6.9626 -3.3894 5.1786 21 1 8.0554 -2.7685 7.2521 22 1 6.0514 -4.1337 7.2991 23 6 2.2669 -0.2704 6.1284 24 6 2.0324 -0.7104 -1.2305 25 6 1.7122 -2.0392 -1.4632 26 6 2.1869 -2.6562 -2.6052 27 7 2.9439 -1.9990 -3.4620 28 6 3.2728 -0.7365 -3.2702 29 6 2.8304 -0.0523 -2.1538 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7994 1.2055 35 1 2.4234 -1.2516 3.7958 36 1 -0.0372 1.1126 5.9625 37 1 -0.2147 1.1348 4.1915 38 1 -1.3918 -0.6930 5.1807 39 1 1.9146 2.3010 3.8609 40 1 2.1431 2.3925 5.6235 41 1 4.0440 1.0264 3.6642 42 1 4.3031 2.6226 4.4094 43 1 5.5026 0.7615 5.6133 44 1 4.3330 1.6216 6.6453 45 1 7.0584 -0.3996 7.6555 46 1 1.9747 0.2836 7.0205 47 1 1.8870 -1.2902 6.1883 48 1 1.0962 -2.5840 -0.7632 49 1 1.9381 -3.6896 -2.7963 50 1 3.8944 -0.2309 -3.9944 51 1 3.1029 0.9817 -2.0025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325853988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:47 Heat of formation + Delta-G solvation = -58.028203 kcal Electronic energy + Delta-G solvation = -32067.281510 eV Core-core repulsion = 27965.918438 eV Total energy + Delta-G solvation = -4101.363072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60712 -41.02112 -39.13358 -37.37466 -36.56378 -35.38537 -33.88065 -32.33589 -32.22077 -31.97321 -31.26220 -28.51657 -27.28510 -26.55613 -25.27019 -24.31779 -23.95077 -22.77489 -21.97766 -20.86434 -20.07795 -18.67337 -18.36592 -18.09502 -17.31273 -17.20327 -16.88028 -16.61210 -16.33342 -16.28966 -15.79241 -15.47442 -15.17391 -14.98695 -14.73406 -14.66998 -14.63193 -14.34905 -14.18987 -14.10049 -13.85239 -13.41708 -13.33598 -13.08879 -12.86375 -12.77774 -12.71279 -12.50704 -12.36008 -12.24864 -12.22491 -11.97034 -11.76365 -11.71021 -11.46170 -11.20586 -10.94867 -10.53407 -10.49933 -10.38836 -10.23588 -10.03748 -9.72212 -8.60707 -7.84435 -5.36299 0.25046 0.32238 1.49532 1.50207 1.56496 1.84129 2.37874 2.51566 2.91405 3.32337 3.34679 3.54068 3.64814 3.67623 3.72720 3.93288 4.04722 4.09439 4.18838 4.25081 4.25531 4.28132 4.28958 4.38616 4.50309 4.56943 4.65591 4.69830 4.75868 4.78533 4.80562 4.91188 4.92620 4.94414 4.99052 5.02984 5.08667 5.11397 5.18433 5.21236 5.29365 5.42335 5.53798 5.55418 5.66060 5.75103 5.81800 5.83607 6.42264 6.81972 6.96187 7.07102 7.17393 7.45784 7.84888 8.39261 9.21009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.003392 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.545639 B = 8251.722450 C = 9885.769858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.518 3.482 6 O -0.567 6.567 7 N -0.692 5.692 8 C 0.172 3.828 9 C 0.078 3.922 10 O -0.577 6.577 11 C -0.113 4.113 12 C -0.122 4.122 13 C 0.180 3.820 14 N -0.600 5.600 15 C -0.258 4.258 16 H 0.070 0.930 17 C -0.045 4.045 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.276 1.276 21 H -0.299 1.299 22 H -0.276 1.276 23 C 0.152 3.848 24 C -0.036 4.036 25 C -0.168 4.168 26 C 0.088 3.912 27 N -0.518 5.518 28 C 0.088 3.912 29 C -0.176 4.176 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.402 0.598 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.391 0.609 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.054 0.946 44 H -0.006 1.006 45 H 0.248 0.752 46 H 0.023 0.977 47 H 0.060 0.940 48 H 0.151 0.849 49 H 0.174 0.826 50 H 0.173 0.827 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.505 0.315 -15.530 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 H 0.097 0.903 4 C -0.169 4.169 5 C 0.306 3.694 6 O -0.448 6.448 7 N -0.341 5.341 8 C 0.084 3.916 9 C -0.001 4.001 10 O -0.384 6.384 11 C -0.151 4.151 12 C -0.161 4.161 13 C 0.054 3.946 14 N -0.322 5.322 15 C -0.389 4.389 16 H 0.088 0.912 17 C -0.241 4.241 18 N -0.581 5.581 19 Si 0.794 3.206 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.202 1.202 23 C 0.026 3.974 24 C -0.044 4.044 25 C -0.188 4.188 26 C -0.068 4.068 27 N -0.228 5.228 28 C -0.068 4.068 29 C -0.196 4.196 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.237 0.763 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.240 0.760 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.012 0.988 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.079 0.921 48 H 0.169 0.831 49 H 0.192 0.808 50 H 0.190 0.810 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.849 0.428 -16.307 20.162 hybrid contribution 0.376 -0.261 1.407 1.480 sum -11.473 0.167 -14.900 18.806 Atomic orbital electron populations 1.21856 0.93060 1.02265 1.02520 1.19775 0.97009 0.98579 0.89116 0.90324 1.21711 1.03177 1.00692 0.91276 1.20753 0.78355 0.85531 0.84787 1.90544 1.41298 1.26044 1.86909 1.45804 1.60285 1.22747 1.05229 1.20761 0.92669 0.91684 0.86528 1.22445 0.92135 0.85101 1.00459 1.86449 1.26155 1.28748 1.97053 1.21670 0.95501 0.95629 1.02325 1.21910 0.95579 0.99547 0.99097 1.20570 0.96261 0.85598 0.92125 1.44143 1.00633 1.04242 1.83224 1.19432 0.98491 0.87435 1.33494 0.91222 1.25869 1.00909 0.99569 0.97713 1.70136 1.17553 1.29492 1.40942 0.85384 0.77647 0.79813 0.77800 1.20224 1.22540 1.20206 1.21103 0.84255 0.98810 0.93209 1.20419 0.94349 0.94328 0.95349 1.22229 1.01967 0.95092 0.99507 1.23149 0.92748 1.00876 0.90048 1.67692 1.13378 1.10001 1.31717 1.23107 0.97035 0.90240 0.96403 1.22320 0.99244 1.02399 0.95621 0.92651 0.91615 0.91956 0.87266 0.88917 0.76333 0.92680 0.92133 0.76033 0.90450 0.91800 0.93350 0.92103 0.92796 0.98781 0.94241 0.95924 0.92121 0.83109 0.80846 0.80980 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.76 71.98 0.63 -2.07 16 2 C -0.03 -0.51 2.24 -11.54 -0.03 -0.54 16 3 H 0.08 1.75 7.76 -2.39 -0.02 1.73 16 4 C -0.13 -2.76 4.93 29.85 0.15 -2.61 16 5 C 0.52 14.37 6.82 87.66 0.60 14.96 16 6 O -0.57 -17.51 10.27 -3.04 -0.03 -17.55 16 7 N -0.69 -21.19 3.98 -422.57 -1.68 -22.87 16 8 C 0.17 5.62 0.45 3.68 0.00 5.62 16 9 C 0.08 2.16 5.71 71.98 0.41 2.57 16 10 O -0.58 -14.90 13.06 -148.98 -1.95 -16.85 16 11 C -0.11 -3.80 4.42 30.62 0.14 -3.66 16 12 C -0.12 -4.62 5.93 30.67 0.18 -4.44 16 13 C 0.18 8.48 5.25 86.36 0.45 8.93 16 14 N -0.60 -28.30 2.90 -699.11 -2.03 -30.32 16 15 C -0.26 -13.34 9.58 84.03 0.80 -12.54 16 16 H 0.07 3.45 7.85 -2.91 -0.02 3.42 16 17 C -0.04 -2.41 5.06 84.86 0.43 -1.99 16 18 N -0.94 -53.91 11.06 21.65 0.24 -53.67 16 19 Si 0.97 43.41 29.57 68.60 2.03 45.43 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.15 6.05 5.05 86.36 0.44 6.49 16 24 C -0.04 -0.68 4.80 -19.67 -0.09 -0.77 16 25 C -0.17 -2.86 8.89 22.36 0.20 -2.66 16 26 C 0.09 1.59 11.18 84.68 0.95 2.54 16 27 N -0.52 -11.20 10.36 -195.83 -2.03 -13.23 16 28 C 0.09 1.65 11.18 84.68 0.95 2.60 16 29 C -0.18 -3.21 9.76 22.36 0.22 -2.99 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.56 5.95 -2.39 -0.01 1.54 16 32 H 0.06 1.04 7.50 -2.39 -0.02 1.02 16 33 H 0.11 1.96 7.65 -2.39 -0.02 1.94 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.40 12.83 8.48 -92.71 -0.79 12.04 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.73 6.40 -2.38 -0.02 1.71 16 38 H 0.39 6.31 9.12 -74.06 -0.68 5.63 16 39 H 0.08 2.58 6.13 -2.39 -0.01 2.57 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 1.87 7.41 -2.38 -0.02 1.85 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 2.90 6.12 -2.39 -0.01 2.88 16 44 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16 46 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 2.45 7.76 -2.39 -0.02 2.44 16 48 H 0.15 1.96 7.35 -2.91 -0.02 1.94 16 49 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 50 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 51 H 0.15 2.19 8.01 -2.91 -0.02 2.17 16 Total: -1.00 -65.93 397.43 0.46 -65.47 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.51 Total: 34.13 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.42 Total: 9.45 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -5.50 Total: -120.10 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.98 Total: -34.39 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.93 0.46 -65.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325853988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.445 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds