Wall clock time and date at job start Wed Apr 1 2020 04:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47399 * 2 1 4 4 C 1.53002 * 109.47293 * 120.00704 * 2 1 3 5 5 C 1.50699 * 109.46607 * 294.99736 * 4 2 1 6 6 O 1.21281 * 120.00294 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99985 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00090 * 185.08500 * 7 5 4 9 9 C 1.53003 * 109.50189 * 298.15097 * 8 7 5 10 10 O 1.42899 * 109.46587 * 305.51427 * 9 8 7 11 11 C 1.53040 * 109.49755 * 58.21668 * 8 7 5 12 12 C 1.53035 * 109.54096 * 58.64736 * 11 8 7 13 13 C 1.53198 * 109.33795 * 61.32088 * 12 11 8 14 14 N 1.46923 * 108.77128 * 305.38045 * 13 12 11 15 15 C 1.36939 * 120.62680 * 233.58753 * 14 13 12 16 16 H 1.07998 * 120.00155 * 29.96149 * 15 14 13 17 17 C 1.38809 * 119.99963 * 209.96602 * 15 14 13 18 18 N 1.31622 * 120.00154 * 11.92239 * 17 15 14 19 19 Si 1.86802 * 120.00184 * 191.92536 * 17 15 14 20 20 H 1.48500 * 109.46836 * 59.99984 * 19 17 15 21 21 H 1.48506 * 109.47268 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47009 * 299.99741 * 19 17 15 23 23 C 1.46926 * 118.74280 * 53.60954 * 14 13 12 24 24 C 1.50708 * 109.47127 * 240.00432 * 2 1 3 25 25 C 1.38654 * 120.78463 * 299.71862 * 24 2 1 26 26 C 1.38208 * 119.15651 * 179.79795 * 25 24 2 27 27 N 1.31875 * 120.76546 * 0.48694 * 26 25 24 28 28 C 1.31866 * 121.72337 * 359.73995 * 27 26 25 29 29 C 1.38206 * 120.76805 * 0.02766 * 28 27 26 30 30 H 1.08998 * 109.47177 * 300.00068 * 1 2 3 31 31 H 1.09001 * 109.46904 * 59.99868 * 1 2 3 32 32 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47239 * 175.00244 * 4 2 1 34 34 H 1.08997 * 109.47201 * 54.99599 * 4 2 1 35 35 H 0.97000 * 119.99848 * 5.09041 * 7 5 4 36 36 H 1.08997 * 109.47373 * 185.51927 * 9 8 7 37 37 H 1.08989 * 109.46905 * 65.51063 * 9 8 7 38 38 H 0.96705 * 113.99848 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.46090 * 178.64000 * 11 8 7 40 40 H 1.08998 * 109.45825 * 298.59380 * 11 8 7 41 41 H 1.08998 * 109.47131 * 301.36606 * 12 11 8 42 42 H 1.09003 * 109.52506 * 181.29716 * 12 11 8 43 43 H 1.09000 * 109.58337 * 185.59096 * 13 12 11 44 44 H 1.09004 * 109.70225 * 65.23734 * 13 12 11 45 45 H 0.96996 * 120.00357 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.58563 * 186.60319 * 23 14 13 47 47 H 1.08996 * 109.58263 * 66.17686 * 23 14 13 48 48 H 1.08000 * 120.41920 * 0.02562 * 25 24 2 49 49 H 1.07998 * 119.61447 * 180.21277 * 26 25 24 50 50 H 1.08005 * 119.61693 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.41940 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 8 1.0110 1.0868 2.3633 7 7 1.9845 -0.3922 3.7001 8 6 1.5031 0.3023 4.8968 9 6 2.0377 1.7359 4.9052 10 8 3.4612 1.7140 4.7820 11 6 -0.0270 0.3279 4.8917 12 6 -0.5628 -1.1051 4.8511 13 6 -0.0953 -1.8571 6.1012 14 7 1.3682 -1.7623 6.1903 15 6 2.1342 -2.8909 6.3116 16 1 1.7970 -3.8215 5.8796 17 6 3.3442 -2.8388 6.9899 18 7 3.6483 -1.7819 7.7131 19 14 4.5410 -4.2685 6.8763 20 1 4.9329 -4.4745 5.4588 21 1 5.7498 -3.9677 7.6849 22 1 3.8921 -5.4996 7.3944 23 6 1.9940 -0.4337 6.1474 24 6 2.0324 -0.7104 -1.2306 25 6 1.7122 -2.0392 -1.4633 26 6 2.1875 -2.6564 -2.6049 27 7 2.9445 -1.9991 -3.4617 28 6 3.2727 -0.7364 -3.2703 29 6 2.8304 -0.0523 -2.1538 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1263 -0.7996 1.2055 34 1 1.6054 -1.7199 1.2950 35 1 2.5502 -1.1751 3.7883 36 1 1.7616 2.2212 5.8412 37 1 1.6092 2.2883 4.0691 38 1 3.8694 2.5907 4.7797 39 1 -0.3850 0.8234 5.7942 40 1 -0.3782 0.8724 4.0152 41 1 -0.1856 -1.6088 3.9611 42 1 -1.6523 -1.0860 4.8242 43 1 -0.3901 -2.9040 6.0293 44 1 -0.5451 -1.4109 6.9882 45 1 4.4936 -1.7457 8.1874 46 1 3.0779 -0.5416 6.1060 47 1 1.7145 0.1307 7.0369 48 1 1.0961 -2.5839 -0.7633 49 1 1.9398 -3.6902 -2.7953 50 1 3.8951 -0.2310 -3.9941 51 1 3.1029 0.9817 -2.0025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325853991.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:51 Heat of formation + Delta-G solvation = -37.417038 kcal Electronic energy + Delta-G solvation = -32284.762776 eV Core-core repulsion = 28184.293471 eV Total energy + Delta-G solvation = -4100.469305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.55885 -39.90163 -37.74271 -35.90906 -35.55700 -33.68825 -32.58794 -31.44329 -31.11721 -30.27983 -29.80984 -27.47227 -25.46284 -25.07473 -24.41825 -23.55779 -22.27885 -21.47410 -20.51190 -19.68907 -18.64027 -17.35768 -16.90076 -16.76207 -16.38150 -16.21090 -15.70920 -15.26710 -15.17403 -14.65032 -14.22064 -14.18081 -14.12991 -13.83153 -13.66344 -13.54190 -13.34355 -12.99909 -12.89009 -12.61105 -12.40595 -12.27258 -11.97498 -11.88581 -11.51336 -11.43278 -11.27344 -11.15027 -10.93941 -10.85727 -10.76682 -10.49712 -10.25311 -9.99623 -9.83910 -9.70567 -9.63195 -9.60684 -9.52914 -9.30630 -8.88741 -8.55606 -8.33005 -6.70552 -5.84266 -3.31929 0.98308 1.10434 3.08817 3.33359 3.39672 3.40415 3.61000 3.74453 4.30470 4.42528 4.48980 4.54870 4.68419 4.88915 4.98323 5.00424 5.05641 5.17215 5.29287 5.38811 5.41263 5.53325 5.57829 5.61950 5.62488 5.68825 5.71073 5.77002 5.82432 5.84415 5.94231 5.96491 6.03116 6.11445 6.30188 6.31149 6.36862 6.39202 6.47567 6.48978 6.55449 6.65880 6.79414 6.95460 7.06834 7.32735 7.63567 7.73647 7.81531 8.06401 8.21034 8.40751 8.77211 9.14724 9.76753 10.34690 11.23045 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.003389 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.275652 B = 8259.734626 C = 9354.271202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 H 0.089 0.911 4 C -0.136 4.136 5 C 0.516 3.484 6 O -0.556 6.556 7 N -0.684 5.684 8 C 0.157 3.843 9 C 0.070 3.930 10 O -0.560 6.560 11 C -0.120 4.120 12 C -0.127 4.127 13 C 0.142 3.858 14 N -0.590 5.590 15 C -0.259 4.259 16 H 0.065 0.935 17 C 0.008 3.992 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.174 3.826 24 C -0.028 4.028 25 C -0.167 4.167 26 C 0.098 3.902 27 N -0.493 5.493 28 C 0.097 3.903 29 C -0.171 4.171 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.407 0.593 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.367 0.633 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.256 0.744 46 H 0.106 0.894 47 H 0.029 0.971 48 H 0.135 0.865 49 H 0.154 0.846 50 H 0.153 0.847 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 5.172 -15.014 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.053 4.053 3 H 0.107 0.893 4 C -0.176 4.176 5 C 0.302 3.698 6 O -0.437 6.437 7 N -0.333 5.333 8 C 0.069 3.931 9 C -0.010 4.010 10 O -0.363 6.363 11 C -0.158 4.158 12 C -0.166 4.166 13 C 0.016 3.984 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.048 3.952 24 C -0.036 4.036 25 C -0.187 4.187 26 C -0.059 4.059 27 N -0.202 5.202 28 C -0.060 4.060 29 C -0.191 4.191 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.243 0.757 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.211 0.789 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.066 0.934 46 H 0.124 0.876 47 H 0.047 0.953 48 H 0.153 0.847 49 H 0.171 0.829 50 H 0.171 0.829 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.133 4.788 -15.690 16.917 hybrid contribution 0.748 -0.058 0.939 1.202 sum -3.385 4.730 -14.751 15.856 Atomic orbital electron populations 1.21945 0.93246 1.01823 1.03370 1.19902 0.97006 0.99150 0.89243 0.89286 1.21724 1.02930 1.00309 0.92617 1.20321 0.79414 0.85397 0.84678 1.90536 1.41858 1.24556 1.86748 1.45850 1.51141 1.31901 1.04382 1.21210 0.93154 0.90481 0.88279 1.22598 0.81187 0.97636 0.99541 1.86567 1.19957 1.32700 1.97089 1.21718 0.94407 0.97777 1.01908 1.21909 0.98318 0.95869 1.00514 1.20969 0.86088 0.97686 0.93668 1.44005 0.99475 1.02624 1.85126 1.19113 1.01305 0.89458 1.29008 0.91744 1.25129 1.00117 0.97375 0.96560 1.69943 1.23601 1.29141 1.31631 0.86374 0.80646 0.82098 0.77602 1.20968 1.21615 1.20918 1.21055 1.00593 0.84292 0.89294 1.20431 0.93770 0.93880 0.95488 1.22064 1.01997 0.95322 0.99303 1.22754 0.93087 0.99905 0.90144 1.67666 1.12566 1.09222 1.30779 1.22733 0.96965 0.90436 0.95860 1.22106 0.99560 1.01639 0.95761 0.89552 0.93130 0.93113 0.89198 0.88948 0.75710 0.94055 0.92294 0.78853 0.92180 0.91123 0.92528 0.93252 0.92943 0.96544 0.93410 0.87627 0.95323 0.84736 0.82874 0.82947 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.76 37.16 0.33 -1.33 16 2 C -0.03 -0.38 2.24 -91.77 -0.21 -0.59 16 3 H 0.09 1.06 7.76 -51.93 -0.40 0.66 16 4 C -0.14 -1.67 4.93 -27.88 -0.14 -1.80 16 5 C 0.52 7.99 6.92 -10.98 -0.08 7.91 16 6 O -0.56 -9.41 10.28 5.56 0.06 -9.35 16 7 N -0.68 -11.84 3.94 -47.50 -0.19 -12.03 16 8 C 0.16 2.89 0.45 -131.70 -0.06 2.83 16 9 C 0.07 1.19 5.66 37.16 0.21 1.40 16 10 O -0.56 -9.61 13.08 -35.23 -0.46 -10.08 16 11 C -0.12 -2.06 4.45 -26.69 -0.12 -2.18 16 12 C -0.13 -2.17 5.93 -26.61 -0.16 -2.33 16 13 C 0.14 2.86 6.52 -3.71 -0.02 2.83 16 14 N -0.59 -13.73 2.90 -172.32 -0.50 -14.23 16 15 C -0.26 -6.63 9.59 -15.06 -0.14 -6.78 16 16 H 0.06 1.62 7.86 -52.49 -0.41 1.21 16 17 C 0.01 0.20 5.03 -17.43 -0.09 0.11 16 18 N -0.90 -25.00 11.02 55.49 0.61 -24.39 16 19 Si 0.90 20.83 29.57 -169.99 -5.03 15.80 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.17 3.92 3.82 -3.71 -0.01 3.91 16 24 C -0.03 -0.29 4.80 -104.31 -0.50 -0.79 16 25 C -0.17 -1.68 8.89 -39.44 -0.35 -2.03 16 26 C 0.10 1.00 11.18 -17.54 -0.20 0.81 16 27 N -0.49 -5.73 10.36 -13.25 -0.14 -5.87 16 28 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 29 C -0.17 -1.68 9.76 -39.44 -0.39 -2.07 16 30 H 0.09 1.16 5.95 -51.93 -0.31 0.85 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.05 7.65 -51.93 -0.40 0.65 16 35 H 0.41 7.54 8.48 -40.82 -0.35 7.20 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.01 6.31 -51.94 -0.33 0.68 16 38 H 0.37 4.51 9.12 45.56 0.42 4.93 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.22 6.26 -51.93 -0.32 0.90 16 41 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.11 2.73 5.88 -51.93 -0.31 2.42 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.13 1.17 7.35 -52.49 -0.39 0.78 16 49 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 50 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 51 H 0.13 1.08 8.01 -52.49 -0.42 0.66 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -30.36 397.54 -9.12 -39.48 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -7.35 Total: 14.00 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.12 Total: 0.67 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.21 Total: -56.52 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.40 Total: -19.43 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.36 -9.12 -39.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325853991.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.064 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds