Wall clock time and date at job start Wed Apr 1 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47598 * 2 1 4 4 N 1.46500 * 109.47288 * 240.00313 * 2 1 3 5 5 C 1.36942 * 120.00039 * 84.99515 * 4 2 1 6 6 H 1.07998 * 120.00086 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99667 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99333 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00335 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47171 * 90.00087 * 9 7 5 11 11 H 1.48502 * 109.47363 * 209.99757 * 9 7 5 12 12 H 1.48499 * 109.47127 * 329.99789 * 9 7 5 13 13 C 1.53006 * 109.47401 * 120.00233 * 2 1 3 14 14 H 1.09000 * 109.51054 * 175.09872 * 13 2 1 15 15 C 1.53297 * 109.51094 * 295.25349 * 13 2 1 16 16 N 1.47228 * 108.40013 * 172.22866 * 15 13 2 17 17 C 1.34778 * 121.02427 * 129.46515 * 16 15 13 18 18 O 1.21633 * 119.99649 * 176.50909 * 17 16 15 19 19 C 1.47253 * 120.00532 * 356.50769 * 17 16 15 20 20 C 1.46752 * 126.92448 * 38.29375 * 19 17 16 21 21 C 1.34064 * 106.31251 * 179.89288 * 20 19 17 22 22 N 1.37087 * 109.04138 * 0.41525 * 21 20 19 23 23 C 1.34579 * 109.94914 * 359.68129 * 22 21 20 24 24 C 1.47028 * 123.95445 * 179.62709 * 22 21 20 25 25 C 1.53149 * 108.83393 * 342.44550 * 24 22 21 26 26 C 1.53125 * 109.58782 * 51.22621 * 25 24 22 27 27 C 1.51089 * 126.72958 * 180.18867 * 21 20 19 28 28 C 1.47152 * 117.98926 * 309.48392 * 16 15 13 29 29 C 1.53297 * 108.41329 * 50.52109 * 28 16 15 30 30 O 1.42958 * 109.51107 * 54.99915 * 13 2 1 31 31 H 1.09000 * 109.46858 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47077 * 299.99624 * 1 2 3 33 33 H 1.08996 * 109.47229 * 60.00136 * 1 2 3 34 34 H 0.97001 * 119.99828 * 265.00193 * 4 2 1 35 35 H 0.97002 * 119.99398 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.67732 * 291.95061 * 15 13 2 37 37 H 1.09001 * 109.67982 * 52.46394 * 15 13 2 38 38 H 1.08000 * 126.83914 * 0.03981 * 20 19 17 39 39 H 1.07995 * 125.72809 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.57778 * 102.24641 * 24 22 21 41 41 H 1.08991 * 109.57825 * 222.51039 * 24 22 21 42 42 H 1.09000 * 109.45488 * 171.26980 * 25 24 22 43 43 H 1.09004 * 109.44578 * 291.19541 * 25 24 22 44 44 H 1.09008 * 109.52510 * 49.73559 * 26 25 24 45 45 H 1.08997 * 109.52833 * 169.85837 * 26 25 24 46 46 H 1.09004 * 109.72058 * 44.89069 * 27 21 20 47 47 H 1.08999 * 109.75769 * 284.25865 * 27 21 20 48 48 H 1.09001 * 109.67744 * 290.77824 * 28 16 15 49 49 H 1.08995 * 109.67952 * 170.26663 * 28 16 15 50 50 H 1.08997 * 109.51013 * 67.60696 * 29 28 16 51 51 H 1.09002 * 109.50946 * 187.70133 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0406 -2.4242 7 6 2.6113 -0.6619 -3.5093 8 7 2.7374 -0.0050 -4.6430 9 14 3.0543 -2.4746 -3.4258 10 1 1.8565 -3.2921 -3.7454 11 1 4.1295 -2.7672 -4.4075 12 1 3.5292 -2.8056 -2.0583 13 6 2.0400 -0.7213 1.2492 14 1 3.1265 -0.7983 1.2070 15 6 1.6295 0.0663 2.4987 16 7 1.9649 -0.7375 3.6857 17 6 2.6678 -0.2086 4.7069 18 8 2.8800 -0.8694 5.7058 19 6 3.1788 1.1693 4.6134 20 6 2.4988 2.3230 4.0134 21 6 3.3299 3.3654 4.1547 22 7 4.4719 2.9445 4.7855 23 6 4.3856 1.6304 5.0630 24 6 5.6085 3.8230 5.0987 25 6 5.5015 5.0920 4.2480 26 6 4.1021 5.6949 4.3992 27 6 3.0841 4.7852 3.7002 28 6 1.5099 -2.1364 3.7236 29 6 1.9262 -2.8166 2.4144 30 8 1.4705 -2.0311 1.3103 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 -1.1527 35 1 3.0600 -0.4625 -5.4351 36 1 2.1709 1.0118 2.5308 37 1 0.5568 0.2581 2.4757 38 1 1.5222 2.3312 3.5522 39 1 5.1423 1.0391 5.5569 40 1 5.5844 4.0888 6.1555 41 1 6.5418 3.3073 4.8729 42 1 6.2463 5.8154 4.5799 43 1 5.6786 4.8435 3.2016 44 1 3.8525 5.7756 5.4573 45 1 4.0807 6.6849 3.9436 46 1 2.0728 5.0883 3.9715 47 1 3.2110 4.8534 2.6198 48 1 0.4250 -2.1669 3.8244 49 1 1.9714 -2.6498 4.5671 50 1 3.0123 -2.9012 2.3775 51 1 1.4817 -3.8106 2.3632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330444475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:26 Heat of formation + Delta-G solvation = -9.313599 kcal Electronic energy + Delta-G solvation = -31799.924254 eV Core-core repulsion = 27700.673606 eV Total energy + Delta-G solvation = -4099.250648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.79391 -40.04300 -38.25751 -36.15513 -35.47110 -34.57644 -33.04473 -32.41534 -30.76704 -29.86081 -28.67416 -27.78140 -27.16035 -24.90122 -24.67530 -23.53328 -22.59774 -21.89469 -21.17048 -19.74613 -19.43614 -18.36530 -17.69297 -17.30577 -16.61042 -16.37628 -15.93502 -15.67616 -15.21660 -15.06539 -14.60810 -14.54316 -14.45350 -14.13535 -14.08374 -13.84576 -13.82182 -13.29653 -13.09527 -12.86476 -12.71104 -12.61580 -12.38636 -12.23758 -11.96356 -11.75352 -11.53669 -11.48178 -11.32348 -11.21205 -11.19282 -10.87713 -10.73608 -10.57899 -10.26538 -9.99885 -9.87424 -9.74091 -9.55040 -8.89515 -8.69182 -8.42827 -8.23562 -7.22437 -5.73772 -3.08181 1.79100 2.24967 2.51628 3.00619 3.34421 3.43072 3.48757 3.50061 3.97574 4.09450 4.23422 4.31073 4.44453 4.64317 4.73084 4.77808 4.84446 4.87116 4.95301 5.03528 5.04738 5.19370 5.25615 5.26394 5.32662 5.36935 5.37328 5.46990 5.53214 5.57881 5.58924 5.65111 5.72851 5.75826 5.77499 5.80023 5.81554 5.96165 5.98769 6.18400 6.38877 6.46059 6.52285 6.64676 6.77493 6.90729 7.06497 7.11394 7.42588 7.45229 8.02852 8.26271 8.45905 9.25618 9.98408 10.19689 11.44545 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.003391 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.290733 B = 8256.328958 C =10034.081441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.191 3.809 3 H 0.067 0.933 4 N -0.744 5.744 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.276 1.276 13 C 0.071 3.929 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.607 5.607 17 C 0.597 3.403 18 O -0.556 6.556 19 C -0.227 4.227 20 C -0.168 4.168 21 C 0.023 3.977 22 N -0.443 5.443 23 C 0.069 3.931 24 C 0.102 3.898 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.055 4.055 28 C 0.080 3.920 29 C 0.047 3.953 30 O -0.365 6.365 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.366 0.634 35 H 0.259 0.741 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.051 0.949 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 9.133 22.810 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.081 3.919 3 H 0.085 0.915 4 N -0.388 5.388 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.714 3.286 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.203 1.203 13 C 0.012 3.988 14 H 0.080 0.920 15 C -0.055 4.055 16 N -0.340 5.340 17 C 0.388 3.612 18 O -0.436 6.436 19 C -0.237 4.237 20 C -0.192 4.192 21 C -0.085 4.085 22 N -0.119 5.119 23 C -0.065 4.065 24 C -0.019 4.019 25 C -0.173 4.173 26 C -0.162 4.162 27 C -0.093 4.093 28 C -0.043 4.043 29 C -0.031 4.031 30 O -0.283 6.283 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.199 0.801 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.167 0.833 39 H 0.187 0.813 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.115 0.885 50 H 0.070 0.930 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.267 9.125 23.087 25.039 hybrid contribution 0.539 -1.397 0.083 1.499 sum 3.806 7.728 23.170 24.720 Atomic orbital electron populations 1.22383 0.98176 1.01726 1.00002 1.20160 0.92957 0.94753 0.83996 0.91538 1.42719 1.79474 1.09794 1.06768 1.19075 1.36841 0.95559 0.85620 0.89173 1.24635 1.01453 0.97450 0.95528 1.69707 1.52856 1.35542 1.00221 0.86552 0.78105 0.86963 0.76986 1.21050 1.21939 1.20256 1.23014 0.97543 0.83192 0.95069 0.91980 1.22989 1.02178 0.96304 0.84014 1.47971 1.54848 1.12312 1.18873 1.17461 0.76638 0.85303 0.81844 1.90743 1.59470 1.62823 1.30528 1.20148 0.97834 0.93502 1.12228 1.21696 1.00686 0.90764 1.06051 1.20327 0.87866 0.96539 1.03757 1.43899 1.14678 1.07724 1.45642 1.21493 0.98924 0.83601 1.02496 1.22081 0.88007 0.91203 1.00564 1.21863 0.98577 0.95737 1.01139 1.21630 0.93976 0.99220 1.01400 1.20404 1.00127 0.87866 1.00854 1.22279 1.00305 0.82053 0.99657 1.22922 0.99329 0.95102 0.85763 1.88045 1.67987 1.25799 1.46482 0.92535 0.94297 0.92472 0.80059 0.93142 0.86964 0.90139 0.83266 0.81344 0.90008 0.89229 0.89579 0.90357 0.91470 0.90462 0.89471 0.89580 0.90811 0.88528 0.93049 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.06 37.16 0.34 -2.52 16 2 C 0.19 3.63 2.77 -67.93 -0.19 3.44 16 3 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 4 N -0.74 -17.80 4.91 -53.42 -0.26 -18.06 16 5 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 8 N -0.94 -29.36 13.97 55.49 0.78 -28.58 16 9 Si 0.88 22.63 27.74 -169.99 -4.71 17.92 16 10 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.28 -6.78 6.52 56.52 0.37 -6.42 16 13 C 0.07 1.17 2.61 -26.57 -0.07 1.10 16 14 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 15 C 0.07 0.93 4.99 -3.49 -0.02 0.91 16 16 N -0.61 -8.60 3.02 -173.54 -0.52 -9.12 16 17 C 0.60 9.15 7.63 -12.60 -0.10 9.06 16 18 O -0.56 -9.94 16.56 5.25 0.09 -9.85 16 19 C -0.23 -3.03 5.57 -103.32 -0.58 -3.61 16 20 C -0.17 -1.95 8.55 -37.61 -0.32 -2.28 16 21 C 0.02 0.24 6.53 -81.52 -0.53 -0.30 16 22 N -0.44 -4.26 3.11 -111.87 -0.35 -4.60 16 23 C 0.07 0.80 11.35 -16.87 -0.19 0.60 16 24 C 0.10 0.62 6.89 -3.68 -0.03 0.60 16 25 C -0.14 -0.70 5.91 -26.59 -0.16 -0.86 16 26 C -0.12 -0.68 5.96 -26.47 -0.16 -0.84 16 27 C -0.05 -0.40 6.26 -27.49 -0.17 -0.57 16 28 C 0.08 1.03 6.62 -3.53 -0.02 1.01 16 29 C 0.05 0.63 6.99 37.31 0.26 0.89 16 30 O -0.36 -6.11 9.24 -35.23 -0.33 -6.43 16 31 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 32 H 0.04 0.55 6.41 -51.93 -0.33 0.22 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.37 8.93 5.44 -40.82 -0.22 8.71 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.11 1.45 4.12 -51.93 -0.21 1.24 16 37 H 0.08 1.04 6.26 -51.93 -0.33 0.71 16 38 H 0.15 1.56 6.94 -52.49 -0.36 1.20 16 39 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 44 H 0.07 0.37 8.12 -51.92 -0.42 -0.05 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.10 1.25 7.10 -51.93 -0.37 0.88 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -35.51 395.01 -9.69 -45.20 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.15 Total: 7.81 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.18 Total: -0.22 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.36 Total: -60.37 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.24 Total: -16.29 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.51 -9.69 -45.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330444475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.882 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds