Wall clock time and date at job start Wed Apr 1 2020 04:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47598 * 2 1 4 4 N 1.46500 * 109.47288 * 240.00313 * 2 1 3 5 5 C 1.36942 * 120.00039 * 84.99515 * 4 2 1 6 6 H 1.07998 * 120.00086 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99667 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99333 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00335 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47171 * 90.00087 * 9 7 5 11 11 H 1.48502 * 109.47363 * 209.99757 * 9 7 5 12 12 H 1.48499 * 109.47127 * 329.99789 * 9 7 5 13 13 C 1.53006 * 109.47401 * 120.00233 * 2 1 3 14 14 H 1.09000 * 109.51054 * 175.09872 * 13 2 1 15 15 C 1.53297 * 109.51094 * 295.25349 * 13 2 1 16 16 N 1.47228 * 108.40013 * 172.22866 * 15 13 2 17 17 C 1.34778 * 121.02427 * 129.46515 * 16 15 13 18 18 O 1.21633 * 119.99649 * 176.50909 * 17 16 15 19 19 C 1.47253 * 120.00532 * 356.50769 * 17 16 15 20 20 C 1.46752 * 126.92448 * 38.29375 * 19 17 16 21 21 C 1.34064 * 106.31251 * 179.89288 * 20 19 17 22 22 N 1.37087 * 109.04138 * 0.41525 * 21 20 19 23 23 C 1.34579 * 109.94914 * 359.68129 * 22 21 20 24 24 C 1.47028 * 123.95445 * 179.62709 * 22 21 20 25 25 C 1.53149 * 108.83393 * 342.44550 * 24 22 21 26 26 C 1.53125 * 109.58782 * 51.22621 * 25 24 22 27 27 C 1.51089 * 126.72958 * 180.18867 * 21 20 19 28 28 C 1.47152 * 117.98926 * 309.48392 * 16 15 13 29 29 C 1.53297 * 108.41329 * 50.52109 * 28 16 15 30 30 O 1.42958 * 109.51107 * 54.99915 * 13 2 1 31 31 H 1.09000 * 109.46858 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47077 * 299.99624 * 1 2 3 33 33 H 1.08996 * 109.47229 * 60.00136 * 1 2 3 34 34 H 0.97001 * 119.99828 * 265.00193 * 4 2 1 35 35 H 0.97002 * 119.99398 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.67732 * 291.95061 * 15 13 2 37 37 H 1.09001 * 109.67982 * 52.46394 * 15 13 2 38 38 H 1.08000 * 126.83914 * 0.03981 * 20 19 17 39 39 H 1.07995 * 125.72809 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.57778 * 102.24641 * 24 22 21 41 41 H 1.08991 * 109.57825 * 222.51039 * 24 22 21 42 42 H 1.09000 * 109.45488 * 171.26980 * 25 24 22 43 43 H 1.09004 * 109.44578 * 291.19541 * 25 24 22 44 44 H 1.09008 * 109.52510 * 49.73559 * 26 25 24 45 45 H 1.08997 * 109.52833 * 169.85837 * 26 25 24 46 46 H 1.09004 * 109.72058 * 44.89069 * 27 21 20 47 47 H 1.08999 * 109.75769 * 284.25865 * 27 21 20 48 48 H 1.09001 * 109.67744 * 290.77824 * 28 16 15 49 49 H 1.08995 * 109.67952 * 170.26663 * 28 16 15 50 50 H 1.08997 * 109.51013 * 67.60696 * 29 28 16 51 51 H 1.09002 * 109.50946 * 187.70133 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0406 -2.4242 7 6 2.6113 -0.6619 -3.5093 8 7 2.7374 -0.0050 -4.6430 9 14 3.0543 -2.4746 -3.4258 10 1 1.8565 -3.2921 -3.7454 11 1 4.1295 -2.7672 -4.4075 12 1 3.5292 -2.8056 -2.0583 13 6 2.0400 -0.7213 1.2492 14 1 3.1265 -0.7983 1.2070 15 6 1.6295 0.0663 2.4987 16 7 1.9649 -0.7375 3.6857 17 6 2.6678 -0.2086 4.7069 18 8 2.8800 -0.8694 5.7058 19 6 3.1788 1.1693 4.6134 20 6 2.4988 2.3230 4.0134 21 6 3.3299 3.3654 4.1547 22 7 4.4719 2.9445 4.7855 23 6 4.3856 1.6304 5.0630 24 6 5.6085 3.8230 5.0987 25 6 5.5015 5.0920 4.2480 26 6 4.1021 5.6949 4.3992 27 6 3.0841 4.7852 3.7002 28 6 1.5099 -2.1364 3.7236 29 6 1.9262 -2.8166 2.4144 30 8 1.4705 -2.0311 1.3103 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 -1.1527 35 1 3.0600 -0.4625 -5.4351 36 1 2.1709 1.0118 2.5308 37 1 0.5568 0.2581 2.4757 38 1 1.5222 2.3312 3.5522 39 1 5.1423 1.0391 5.5569 40 1 5.5844 4.0888 6.1555 41 1 6.5418 3.3073 4.8729 42 1 6.2463 5.8154 4.5799 43 1 5.6786 4.8435 3.2016 44 1 3.8525 5.7756 5.4573 45 1 4.0807 6.6849 3.9436 46 1 2.0728 5.0883 3.9715 47 1 3.2110 4.8534 2.6198 48 1 0.4250 -2.1669 3.8244 49 1 1.9714 -2.6498 4.5671 50 1 3.0123 -2.9012 2.3775 51 1 1.4817 -3.8106 2.3632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330444475.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:25 Heat of formation + Delta-G solvation = -31.994101 kcal Electronic energy + Delta-G solvation = -31800.907754 eV Core-core repulsion = 27700.673606 eV Total energy + Delta-G solvation = -4100.234148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.58564 -41.18258 -39.50466 -37.16451 -36.71190 -35.75603 -34.33992 -33.67816 -32.31200 -30.99347 -29.92820 -28.49714 -28.36034 -26.30298 -25.58135 -24.67015 -24.05743 -22.49566 -22.30172 -21.23072 -20.31906 -19.70262 -19.21591 -18.21465 -17.70933 -17.46084 -16.81241 -16.67081 -16.57101 -16.36547 -16.15304 -15.73866 -15.32645 -15.09097 -14.85363 -14.77598 -14.65024 -14.49353 -14.44519 -14.24890 -14.17513 -13.77033 -13.60091 -13.22585 -13.21428 -12.97476 -12.87997 -12.50122 -12.42301 -12.30713 -12.12193 -11.93235 -11.81402 -11.77172 -11.74035 -11.69975 -11.52710 -11.20635 -10.95057 -10.90168 -9.67654 -9.42342 -9.28425 -9.09504 -7.99496 -5.30925 0.83445 1.39174 1.40956 1.42216 1.48013 1.70979 2.04507 2.29702 2.50483 2.75723 3.33019 3.43747 3.61346 3.62348 3.79314 3.83129 3.88634 3.93472 3.97257 4.05297 4.11123 4.24539 4.26826 4.38743 4.39453 4.46246 4.50856 4.53673 4.57521 4.61809 4.66619 4.75838 4.80954 4.85796 4.91086 4.93307 4.96883 5.07884 5.10759 5.10838 5.20192 5.27314 5.33655 5.39945 5.64080 5.78959 5.80979 6.09566 6.18182 6.26628 6.30528 6.36797 7.11271 7.12622 7.88640 8.07677 9.21929 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.003391 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.290733 B = 8256.328958 C =10034.081441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.184 3.816 3 H 0.069 0.931 4 N -0.750 5.750 5 C -0.222 4.222 6 H 0.065 0.935 7 C -0.061 4.061 8 N -0.982 5.982 9 Si 0.947 3.053 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.260 1.260 13 C 0.082 3.918 14 H 0.045 0.955 15 C 0.080 3.920 16 N -0.608 5.608 17 C 0.594 3.406 18 O -0.590 6.590 19 C -0.259 4.259 20 C -0.186 4.186 21 C 0.024 3.976 22 N -0.439 5.439 23 C 0.066 3.934 24 C 0.093 3.907 25 C -0.133 4.133 26 C -0.122 4.122 27 C -0.057 4.057 28 C 0.081 3.919 29 C 0.047 3.953 30 O -0.383 6.383 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.045 0.955 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 9.621 24.730 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.076 3.924 3 H 0.086 0.914 4 N -0.393 5.393 5 C -0.353 4.353 6 H 0.083 0.917 7 C -0.252 4.252 8 N -0.634 5.634 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.185 1.185 13 C 0.023 3.977 14 H 0.063 0.937 15 C -0.043 4.043 16 N -0.340 5.340 17 C 0.386 3.614 18 O -0.472 6.472 19 C -0.269 4.269 20 C -0.210 4.210 21 C -0.085 4.085 22 N -0.115 5.115 23 C -0.071 4.071 24 C -0.026 4.026 25 C -0.170 4.170 26 C -0.160 4.160 27 C -0.094 4.094 28 C -0.042 4.042 29 C -0.030 4.030 30 O -0.301 6.301 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.198 0.802 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.174 0.826 39 H 0.196 0.804 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.114 0.886 50 H 0.063 0.937 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.409 9.629 25.056 27.058 hybrid contribution 0.489 -1.451 -0.427 1.590 sum 3.898 8.178 24.629 26.242 Atomic orbital electron populations 1.22222 0.96561 1.01487 1.00853 1.20394 0.93936 0.94802 0.83310 0.91352 1.42774 1.79789 1.09746 1.07007 1.19076 1.34524 0.94659 0.87024 0.91661 1.25353 1.02712 1.01804 0.95343 1.69863 1.55075 1.37383 1.01035 0.85513 0.77612 0.81762 0.77515 1.20809 1.22314 1.18511 1.22723 0.96370 0.83719 0.94937 0.93650 1.22890 1.02957 0.95935 0.82475 1.48035 1.54525 1.12814 1.18592 1.17791 0.76184 0.85942 0.81484 1.90710 1.60834 1.63914 1.31769 1.20202 0.99211 0.93103 1.14425 1.21837 1.01450 0.90735 1.06936 1.20782 0.87550 0.97515 1.02670 1.44194 1.15353 1.07422 1.44491 1.21711 0.98706 0.84579 1.02065 1.22426 0.87212 0.91169 1.01799 1.21886 0.99141 0.95714 1.00296 1.21641 0.93462 0.99458 1.01411 1.20527 1.01400 0.86552 1.00961 1.22340 1.01072 0.81460 0.99305 1.23099 0.99197 0.95824 0.84920 1.88006 1.68195 1.25937 1.48008 0.93247 0.90550 0.94504 0.80227 0.93482 0.86232 0.88758 0.82623 0.80353 0.88380 0.88071 0.87167 0.91541 0.91229 0.88966 0.88523 0.89632 0.89445 0.88615 0.93708 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.06 71.98 0.65 -4.43 16 2 C 0.18 6.79 2.77 44.99 0.12 6.92 16 3 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 4 N -0.75 -35.47 4.91 -322.94 -1.58 -37.06 16 5 C -0.22 -12.56 10.41 84.03 0.87 -11.68 16 6 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 7 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 8 N -0.98 -63.00 13.97 21.65 0.30 -62.70 16 9 Si 0.95 46.99 27.74 68.60 1.90 48.89 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 12 H -0.26 -12.02 6.52 99.48 0.65 -11.37 16 13 C 0.08 2.59 2.61 30.70 0.08 2.67 16 14 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 15 C 0.08 2.06 4.99 86.34 0.43 2.49 16 16 N -0.61 -16.54 3.02 -821.20 -2.48 -19.02 16 17 C 0.59 18.00 7.63 86.61 0.66 18.66 16 18 O -0.59 -21.14 16.56 -4.13 -0.07 -21.21 16 19 C -0.26 -6.79 5.57 -19.02 -0.11 -6.90 16 20 C -0.19 -4.15 8.55 23.55 0.20 -3.95 16 21 C 0.02 0.45 6.53 40.91 0.27 0.72 16 22 N -0.44 -7.77 3.11 -507.85 -1.58 -9.35 16 23 C 0.07 1.46 11.35 83.93 0.95 2.41 16 24 C 0.09 0.92 6.89 86.33 0.59 1.51 16 25 C -0.13 -1.02 5.91 30.69 0.18 -0.84 16 26 C -0.12 -1.01 5.96 30.77 0.18 -0.83 16 27 C -0.06 -0.71 6.26 30.10 0.19 -0.53 16 28 C 0.08 1.96 6.62 86.35 0.57 2.53 16 29 C 0.05 1.17 6.99 72.08 0.50 1.67 16 30 O -0.38 -12.14 9.24 -148.98 -1.38 -13.51 16 31 H 0.05 1.73 7.56 -2.39 -0.02 1.71 16 32 H 0.08 1.97 6.41 -2.39 -0.02 1.95 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.36 17.37 5.44 -92.71 -0.50 16.86 16 35 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.12 2.95 4.12 -2.39 -0.01 2.94 16 37 H 0.09 2.18 6.26 -2.39 -0.01 2.16 16 38 H 0.16 3.07 6.94 -2.91 -0.02 3.05 16 39 H 0.18 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.07 0.70 8.11 -2.39 -0.02 0.68 16 44 H 0.07 0.57 8.12 -2.38 -0.02 0.55 16 45 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.10 2.38 7.10 -2.39 -0.02 2.36 16 50 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -77.62 395.01 2.32 -75.30 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.37 Total: 31.36 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.83 Total: 7.29 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -5.34 Total: -128.13 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.45 Total: -34.72 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.90 Total: 48.89 kcal Total: -77.62 2.32 -75.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330444475.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.306 kcal (2) G-P(sol) polarization free energy of solvation -77.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds