Wall clock time and date at job start Wed Apr 1 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46700 * 240.00585 * 2 1 3 5 5 N 1.46907 * 109.46978 * 184.99786 * 4 2 1 6 6 C 1.46951 * 111.00031 * 293.80205 * 5 4 2 7 7 C 1.53053 * 109.36816 * 176.81059 * 6 5 4 8 8 N 1.46952 * 109.36255 * 58.39896 * 7 6 5 9 9 C 1.46898 * 110.99877 * 176.81380 * 8 7 6 10 10 C 1.46965 * 110.88046 * 300.68180 * 8 7 6 11 11 C 1.46952 * 111.00058 * 170.00067 * 5 4 2 12 12 N 1.46499 * 109.47537 * 120.00652 * 2 1 3 13 13 S 1.65593 * 119.99833 * 265.00113 * 12 2 1 14 14 O 1.42104 * 104.27905 * 308.92754 * 13 12 2 15 15 O 1.42102 * 104.27718 * 181.06534 * 13 12 2 16 16 C 1.81399 * 104.45079 * 64.99683 * 13 12 2 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.52993 * 109.47212 * 300.00460 * 17 16 13 19 19 C 1.53000 * 109.46632 * 59.99873 * 17 16 13 20 20 C 1.50696 * 109.47353 * 179.97438 * 17 16 13 21 21 H 1.08000 * 120.00290 * 0.02562 * 20 17 16 22 22 C 1.37870 * 119.99993 * 180.02562 * 20 17 16 23 23 N 1.31515 * 120.00258 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 120.00043 * 180.02562 * 22 20 17 25 25 H 1.48507 * 109.46904 * 90.00228 * 24 22 20 26 26 H 1.48501 * 109.47483 * 209.99891 * 24 22 20 27 27 H 1.48494 * 109.47201 * 330.00053 * 24 22 20 28 28 H 1.08996 * 109.46994 * 59.99659 * 1 2 3 29 29 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47034 * 299.99249 * 1 2 3 31 31 H 1.09000 * 109.47495 * 304.99729 * 4 2 1 32 32 H 1.08999 * 109.47487 * 65.00037 * 4 2 1 33 33 H 1.09004 * 109.48726 * 296.77846 * 6 5 4 34 34 H 1.08999 * 109.49402 * 56.83803 * 6 5 4 35 35 H 1.09000 * 109.48643 * 298.43265 * 7 6 5 36 36 H 1.08996 * 109.50675 * 178.38095 * 7 6 5 37 37 H 1.09003 * 109.47288 * 183.79454 * 9 8 7 38 38 H 1.09000 * 109.47241 * 303.79930 * 9 8 7 39 39 H 1.09004 * 109.47174 * 63.80192 * 9 8 7 40 40 H 1.08994 * 109.48826 * 299.35215 * 10 8 7 41 41 H 1.08998 * 109.50336 * 179.29867 * 10 8 7 42 42 H 1.09006 * 109.48943 * 303.15160 * 11 5 4 43 43 H 1.08996 * 109.49076 * 63.20130 * 11 5 4 44 44 H 0.97001 * 119.99882 * 84.99585 * 12 2 1 45 45 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 46 46 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 47 47 H 1.09002 * 109.47722 * 59.99491 * 18 17 16 48 48 H 1.09000 * 109.47250 * 179.97438 * 18 17 16 49 49 H 1.09004 * 109.46862 * 299.99541 * 18 17 16 50 50 H 1.09001 * 109.47194 * 60.00452 * 19 17 16 51 51 H 1.09000 * 109.46968 * 180.02562 * 19 17 16 52 52 H 1.09002 * 109.47398 * 300.00272 * 19 17 16 53 53 H 0.96999 * 120.00397 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1906 6 6 4.1314 0.4996 -1.2758 7 6 5.6481 0.3538 -1.1313 8 7 6.1549 -0.5341 -2.1869 9 6 7.6189 -0.6395 -2.1281 10 6 5.5276 -1.8604 -2.1017 11 6 4.0109 -1.7145 -2.2462 12 7 2.0185 -0.6907 1.1960 13 16 2.4123 0.1769 2.5504 14 8 3.2875 1.1905 2.0750 15 8 2.8607 -0.8032 3.4764 16 6 0.8409 0.8986 3.0985 17 6 1.0752 1.7336 4.3590 18 6 1.6394 0.8400 5.4652 19 6 2.0709 2.8537 4.0508 20 6 -0.2301 2.3337 4.8140 21 1 -1.1364 2.1386 4.2598 22 6 -0.2675 3.1317 5.9376 23 7 0.8361 3.3696 6.6122 24 14 -1.8857 3.8749 6.5020 25 1 -2.5559 2.9436 7.4448 26 1 -1.6253 5.1677 7.1846 27 1 -2.7622 4.1041 5.3255 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6053 -1.7197 -1.2954 32 1 1.7516 -0.1582 -2.1371 33 1 3.8996 0.9502 -2.2409 34 1 3.7493 1.1347 -0.4765 35 1 5.8812 -0.0716 -0.1552 36 1 6.1182 1.3330 -1.2229 37 1 7.9732 -1.2478 -2.9604 38 1 8.0578 0.3562 -2.1932 39 1 7.9122 -1.1051 -1.1872 40 1 5.7593 -2.3109 -1.1367 41 1 5.9096 -2.4956 -2.9008 42 1 3.5411 -2.6938 -2.1543 43 1 3.7775 -1.2893 -3.2223 44 1 2.1111 -1.6563 1.1946 45 1 0.4388 1.5350 2.3102 46 1 0.1317 0.1006 3.3184 47 1 2.5837 0.4063 5.1359 48 1 1.8068 1.4349 6.3630 49 1 0.9301 0.0420 5.6847 50 1 1.6690 3.4905 3.2627 51 1 2.2382 3.4484 4.9489 52 1 3.0152 2.4201 3.7214 53 1 0.8099 3.9314 7.4026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365644506.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:48 Heat of formation + Delta-G solvation = -86.015064 kcal Electronic energy + Delta-G solvation = -31266.637418 eV Core-core repulsion = 27299.504696 eV Total energy + Delta-G solvation = -3967.132722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.38028 -38.20486 -38.10970 -37.78044 -36.78260 -35.43911 -33.62925 -31.88063 -31.17397 -29.49731 -28.31300 -27.68296 -27.23497 -26.19646 -24.72312 -23.99607 -21.97868 -21.35462 -20.74436 -20.19588 -18.81038 -17.85026 -17.43343 -17.07831 -16.82075 -16.62265 -16.24329 -15.98011 -15.85424 -15.58547 -15.53210 -15.09513 -14.98858 -14.67280 -14.42996 -14.29317 -13.89158 -13.71208 -13.45650 -13.34618 -13.15674 -12.99576 -12.93371 -12.91243 -12.87095 -12.75300 -12.52785 -12.45837 -12.36399 -12.22536 -12.18109 -12.11194 -12.06157 -11.85838 -11.68120 -11.54940 -11.43241 -11.28855 -10.63698 -10.40838 -10.21744 -9.42449 -9.18104 -8.01919 -6.20572 -0.50525 1.44259 1.46034 1.54610 2.02486 2.44871 2.90260 2.95819 2.99805 3.20388 3.41842 3.76472 3.92077 4.02648 4.10374 4.17421 4.20352 4.21419 4.32909 4.34774 4.48211 4.54600 4.56874 4.60853 4.61206 4.66878 4.73924 4.84316 4.85899 4.87626 4.88223 4.93290 4.95428 4.97484 5.04806 5.07005 5.09830 5.10758 5.34202 5.37857 5.46006 5.51974 5.65551 5.95311 5.97622 5.97874 6.12792 6.16892 6.22125 6.33737 6.35629 6.84512 7.47744 8.97930 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.002918 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.196397 B = 9593.776839 C =10115.011360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.142 3.858 3 H 0.076 0.924 4 C 0.058 3.942 5 N -0.550 5.550 6 C 0.054 3.946 7 C 0.057 3.943 8 N -0.550 5.550 9 C 0.024 3.976 10 C 0.053 3.947 11 C 0.060 3.940 12 N -1.093 6.093 13 S 2.614 3.386 14 O -0.987 6.987 15 O -1.002 7.002 16 C -0.588 4.588 17 C 0.071 3.929 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.515 4.515 21 H 0.064 0.936 22 C 0.017 3.983 23 N -0.909 5.909 24 Si 0.954 3.046 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.266 1.266 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.019 0.981 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.019 0.981 40 H 0.027 0.973 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.045 0.955 44 H 0.422 0.578 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.029 0.971 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.040 0.960 51 H 0.068 0.932 52 H 0.032 0.968 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -10.293 -21.233 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.071 4.071 5 N -0.275 5.275 6 C -0.074 4.074 7 C -0.071 4.071 8 N -0.275 5.275 9 C -0.124 4.124 10 C -0.075 4.075 11 C -0.068 4.068 12 N -0.853 5.853 13 S 2.711 3.289 14 O -0.977 6.977 15 O -0.992 6.992 16 C -0.720 4.720 17 C 0.069 3.931 18 C -0.218 4.218 19 C -0.215 4.215 20 C -0.555 4.555 21 H 0.082 0.918 22 C -0.183 4.183 23 N -0.548 5.548 24 Si 0.780 3.220 25 H -0.205 1.205 26 H -0.214 1.214 27 H -0.190 1.190 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.064 0.936 44 H 0.257 0.743 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.048 0.952 48 H 0.089 0.911 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.087 0.913 52 H 0.051 0.949 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.497 -9.942 -20.742 23.437 hybrid contribution -1.094 0.377 0.946 1.494 sum 3.403 -9.565 -19.796 22.247 Atomic orbital electron populations 1.22462 0.93453 1.04286 1.03644 1.21025 0.94655 0.96178 0.84731 0.90620 1.22395 0.86775 1.02311 0.95639 1.62038 1.06080 1.11524 1.47859 1.22175 0.93603 0.90961 1.00682 1.22102 0.95405 0.97431 0.92167 1.62263 1.06739 1.11964 1.46537 1.22406 0.86675 1.02689 1.00662 1.22257 0.94599 0.89954 1.00684 1.22198 0.94232 0.97741 0.92647 1.55137 1.84100 1.19714 1.26362 1.04634 0.77538 0.73802 0.72926 1.93484 1.63119 1.61131 1.79942 1.93488 1.81194 1.60503 1.64038 1.30599 1.20730 1.11701 1.09007 1.17889 0.95848 0.91112 0.88238 1.22211 0.97895 0.98724 1.02981 1.22179 0.96926 1.00734 1.01695 1.21307 0.93660 1.29720 1.10766 0.91776 1.25686 0.99220 0.96714 0.96648 1.69951 1.27988 1.38448 1.18399 0.85623 0.80302 0.77612 0.78485 1.20475 1.21351 1.18994 0.89393 0.90113 0.92386 0.87975 0.91911 0.93567 0.90670 0.96271 0.90091 0.89746 0.90996 0.96230 0.95463 0.88473 0.88517 0.93648 0.74264 0.84549 0.84754 0.95193 0.91118 0.94255 0.94062 0.91272 0.94936 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.48 71.98 0.68 -2.21 16 2 C 0.14 2.88 2.59 44.99 0.12 3.00 16 3 H 0.08 1.78 6.07 -2.39 -0.01 1.77 16 4 C 0.06 0.92 4.58 86.30 0.39 1.32 16 5 N -0.55 -11.21 4.43 -895.70 -3.97 -15.18 16 6 C 0.05 1.28 5.41 86.31 0.47 1.75 16 7 C 0.06 1.40 5.62 86.31 0.49 1.89 16 8 N -0.55 -11.17 4.97 -921.94 -4.58 -15.75 16 9 C 0.02 0.40 9.60 127.69 1.23 1.62 16 10 C 0.05 0.94 5.62 86.31 0.49 1.42 16 11 C 0.06 0.96 5.61 86.31 0.48 1.44 16 12 N -1.09 -27.64 5.08 -169.38 -0.86 -28.50 16 13 S 2.61 95.17 4.47 -56.49 -0.25 94.92 16 14 O -0.99 -40.46 14.48 -127.65 -1.85 -42.31 16 15 O -1.00 -42.99 15.70 -127.65 -2.00 -45.00 16 16 C -0.59 -22.07 4.16 71.98 0.30 -21.77 16 17 C 0.07 3.43 0.52 -52.93 -0.03 3.41 16 18 C -0.16 -8.12 7.78 71.98 0.56 -7.56 16 19 C -0.16 -7.84 7.77 71.98 0.56 -7.28 16 20 C -0.52 -26.74 8.01 25.60 0.21 -26.53 16 21 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 22 C 0.02 0.88 5.15 84.65 0.44 1.31 16 23 N -0.91 -50.68 9.35 21.44 0.20 -50.47 16 24 Si 0.95 42.08 29.54 68.60 2.03 44.10 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.06 1.12 5.78 -2.39 -0.01 1.10 16 31 H 0.10 1.22 8.03 -2.39 -0.02 1.20 16 32 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.07 2.11 5.91 -2.39 -0.01 2.10 16 35 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 39 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.20 8.07 -2.38 -0.02 1.18 16 43 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.42 9.30 8.80 -96.75 -0.85 8.45 16 45 H 0.14 4.51 6.77 -2.39 -0.02 4.49 16 46 H 0.13 4.53 8.14 -2.39 -0.02 4.51 16 47 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 48 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 49 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 50 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 52 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 53 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -68.58 401.89 -4.88 -73.47 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.03 Total: 32.93 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 6.37 Total: -48.21 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -9.21 Total: -109.90 kcal Atomic # 8 Polarization: -83.45 SS G_CDS: -3.85 Total: -87.30 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 95.17 SS G_CDS: -0.25 Total: 94.92 kcal Total: -68.58 -4.88 -73.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365644506.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.548 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds