Wall clock time and date at job start Wed Apr 1 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46984 * 2 1 4 4 C 1.52994 * 109.47101 * 120.00455 * 2 1 3 5 5 N 1.46905 * 109.46795 * 173.09572 * 4 2 1 6 6 C 1.46907 * 110.99965 * 183.87568 * 5 4 2 7 7 C 1.50691 * 109.47226 * 179.97438 * 6 5 4 8 8 O 1.21294 * 120.00084 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00188 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00281 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00107 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00110 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00470 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 120.00099 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46922 * 60.00102 * 14 12 10 16 16 H 1.48504 * 109.46947 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47024 * 300.00138 * 14 12 10 18 18 N 1.46505 * 109.46987 * 240.00279 * 2 1 3 19 19 C 1.46495 * 120.00093 * 293.35577 * 18 2 1 20 20 C 1.34777 * 119.99992 * 113.35518 * 18 2 1 21 21 O 1.21279 * 120.00216 * 183.07994 * 20 18 2 22 22 C 1.50699 * 120.00007 * 3.07627 * 20 18 2 23 23 H 1.08997 * 109.47226 * 306.50346 * 22 20 18 24 24 C 1.52997 * 109.46970 * 66.50064 * 22 20 18 25 25 C 1.50702 * 109.47106 * 186.50190 * 22 20 18 26 26 C 1.38234 * 120.00281 * 120.00128 * 25 22 20 27 27 C 1.38233 * 120.00160 * 179.97438 * 26 25 22 28 28 C 1.38233 * 120.00031 * 359.97438 * 27 26 25 29 29 C 1.38241 * 119.99853 * 359.97438 * 28 27 26 30 30 C 1.38231 * 120.00072 * 0.07285 * 29 28 27 31 31 H 1.08999 * 109.46953 * 299.99867 * 1 2 3 32 32 H 1.09000 * 109.47285 * 59.99710 * 1 2 3 33 33 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47140 * 293.08906 * 4 2 1 35 35 H 1.08990 * 109.47501 * 53.09650 * 4 2 1 36 36 H 1.00895 * 111.00110 * 59.92657 * 5 4 2 37 37 H 1.09004 * 109.46801 * 300.00193 * 6 5 4 38 38 H 1.08997 * 109.46615 * 59.99728 * 6 5 4 39 39 H 0.96997 * 119.99741 * 0.02562 * 9 7 6 40 40 H 0.96998 * 120.00688 * 179.97438 * 13 12 10 41 41 H 1.09006 * 109.47156 * 274.14641 * 19 18 2 42 42 H 1.09011 * 109.47349 * 34.14258 * 19 18 2 43 43 H 1.08998 * 109.47663 * 154.13982 * 19 18 2 44 44 H 1.09004 * 109.47363 * 291.03162 * 24 22 20 45 45 H 1.09006 * 109.47188 * 51.03128 * 24 22 20 46 46 H 1.09002 * 109.47108 * 171.03055 * 24 22 20 47 47 H 1.08005 * 119.99348 * 359.97438 * 26 25 22 48 48 H 1.08003 * 119.99943 * 180.02562 * 27 26 25 49 49 H 1.07995 * 120.00018 * 179.71631 * 28 27 26 50 50 H 1.08002 * 119.99872 * 179.97438 * 29 28 27 51 51 H 1.07999 * 120.00171 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.4996 -0.8671 1.1687 6 6 4.0153 -1.6372 2.3085 7 6 5.5121 -1.7662 2.1915 8 8 6.0924 -1.2656 1.2514 9 7 6.2062 -2.4380 3.1314 10 6 7.5678 -2.5558 3.0247 11 1 8.0845 -2.1101 2.1876 12 6 8.2833 -3.2488 3.9935 13 7 7.6547 -3.7917 5.0118 14 14 10.1387 -3.4100 3.8477 15 1 10.7542 -2.0587 3.8453 16 1 10.6599 -4.1888 4.9997 17 1 10.4768 -4.1103 2.5825 18 7 2.0183 -0.6906 -1.1963 19 6 1.7883 -2.1284 -1.3572 20 6 2.6792 -0.0031 -2.1487 21 8 3.0344 -0.5627 -3.1643 22 6 2.9766 1.4611 -1.9517 23 1 2.0534 1.9911 -1.7176 24 6 3.9678 1.6294 -0.7984 25 6 3.5743 2.0266 -3.2143 26 6 2.9408 3.0622 -3.8753 27 6 3.4893 3.5813 -5.0331 28 6 4.6716 3.0650 -5.5297 29 6 5.3056 2.0300 -4.8680 30 6 4.7566 1.5103 -3.7107 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7811 -0.1411 2.1349 35 1 1.5794 -1.7070 1.3130 36 1 3.9501 0.0335 1.1074 37 1 3.7660 -1.1232 3.2368 38 1 3.5644 -2.6295 2.3103 39 1 5.7421 -2.8387 3.8831 40 1 8.1541 -4.2758 5.6880 41 1 2.5831 -2.6818 -0.8570 42 1 0.8274 -2.3943 -0.9163 43 1 1.7830 -2.3791 -2.4180 44 1 3.4800 1.3689 0.1410 45 1 4.8244 0.9741 -0.9568 46 1 4.3052 2.6651 -0.7575 47 1 2.0173 3.4658 -3.4870 48 1 2.9945 4.3907 -5.5494 49 1 5.0977 3.4675 -6.4367 50 1 6.2291 1.6264 -5.2562 51 1 5.2518 0.7015 -3.1941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482353930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:04 Heat of formation + Delta-G solvation = -37.268319 kcal Electronic energy + Delta-G solvation = -31245.061234 eV Core-core repulsion = 27144.598379 eV Total energy + Delta-G solvation = -4100.462856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59245 -38.92556 -38.27079 -36.99974 -34.57124 -34.23346 -33.73847 -31.36307 -31.13498 -30.87368 -29.66653 -27.67481 -26.99066 -25.07742 -24.49855 -23.34765 -22.58823 -21.96671 -21.06808 -19.41869 -18.88074 -17.88075 -17.28614 -16.91214 -16.26022 -15.72345 -15.52352 -15.41046 -15.04308 -14.78180 -14.57497 -14.33662 -14.12557 -13.95034 -13.72612 -13.49659 -13.32907 -13.28036 -13.04763 -12.76986 -12.66414 -12.37133 -12.26467 -12.06350 -11.99887 -11.87352 -11.66873 -11.58593 -11.50516 -11.44418 -11.02855 -10.98676 -10.90985 -10.74388 -10.44695 -10.22006 -9.56808 -9.50401 -8.84818 -8.70496 -8.60358 -8.40888 -8.08378 -7.96627 -6.42395 -3.83168 1.34537 1.46683 2.77619 3.06949 3.19893 3.25522 3.30142 3.82640 3.89740 4.01965 4.24895 4.48990 4.51495 4.62144 4.83123 4.89268 4.98950 5.02752 5.09367 5.10844 5.13968 5.21141 5.24231 5.35846 5.38488 5.47289 5.49656 5.50246 5.60804 5.64285 5.69197 5.72206 5.77447 5.82015 5.91441 5.94376 6.00368 6.08992 6.10776 6.24056 6.26714 6.45010 6.55862 6.59741 6.67242 7.02473 7.12929 7.48085 7.54474 7.59065 8.05315 8.33275 8.60436 9.17285 9.53451 10.04894 10.75261 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.002741 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.849399 B =10212.987166 C =12051.128535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 H 0.098 0.902 4 C 0.045 3.955 5 N -0.664 5.664 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.589 5.589 19 C 0.089 3.911 20 C 0.526 3.474 21 O -0.535 6.535 22 C -0.069 4.069 23 H 0.095 0.905 24 C -0.146 4.146 25 C -0.066 4.066 26 C -0.115 4.115 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.123 4.123 30 C -0.076 4.076 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.348 0.652 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.448 11.988 -10.317 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.115 0.885 4 C -0.086 4.086 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.465 6.465 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.321 5.321 19 C -0.053 4.053 20 C 0.313 3.687 21 O -0.411 6.411 22 C -0.090 4.090 23 H 0.113 0.887 24 C -0.203 4.203 25 C -0.067 4.067 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.141 4.141 29 C -0.141 4.141 30 C -0.094 4.094 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.169 0.831 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.800 11.344 -11.735 22.716 hybrid contribution 0.468 0.115 1.414 1.494 sum -15.332 11.458 -10.321 21.746 Atomic orbital electron populations 1.22157 0.94692 1.02899 1.02457 1.21443 0.93977 0.97331 0.85091 0.88472 1.22366 0.89917 1.00855 0.95422 1.60142 1.02497 1.23816 1.43370 1.21674 0.95527 0.99240 0.91759 1.19787 0.87973 0.84624 0.85066 1.90529 1.70567 1.51764 1.33615 1.41851 1.07779 1.47780 1.22625 1.19644 0.81955 1.32217 1.09037 0.87997 1.25252 1.00640 0.96646 0.95355 1.69599 1.36869 1.35930 1.12002 0.85930 0.82150 0.78497 0.77727 1.19912 1.20980 1.19859 1.47455 1.56142 1.09109 1.19382 1.21542 1.00767 0.80382 1.02638 1.20293 0.77129 0.88580 0.82669 1.90695 1.51629 1.70768 1.28054 1.20266 1.00247 0.93375 0.95151 0.88701 1.22029 0.99509 1.03201 0.95559 1.19333 0.95499 0.96265 0.95591 1.20952 0.99624 0.96928 0.95847 1.21009 0.96512 1.00478 0.96633 1.21114 0.95909 0.97217 0.99819 1.21158 1.00180 0.96917 0.95842 1.21047 0.94769 0.98005 0.95591 0.91262 0.92034 0.91866 0.94316 0.90455 0.83055 0.93975 0.89688 0.77519 0.91833 0.91673 0.92202 0.90953 0.91500 0.90253 0.91434 0.86450 0.86390 0.86446 0.86151 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.27 37.16 0.34 -0.78 16 2 C 0.13 1.17 2.19 -67.93 -0.15 1.02 16 3 H 0.10 0.82 4.06 -51.93 -0.21 0.61 16 4 C 0.04 0.47 4.80 -3.82 -0.02 0.45 16 5 N -0.66 -9.78 5.76 -115.06 -0.66 -10.44 16 6 C 0.05 0.84 6.16 -4.98 -0.03 0.81 16 7 C 0.44 10.15 7.82 -10.99 -0.09 10.06 16 8 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 9 N -0.56 -14.11 5.29 -10.97 -0.06 -14.17 16 10 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 14 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 N -0.59 -7.14 2.44 -173.93 -0.42 -7.57 16 19 C 0.09 1.08 9.49 59.84 0.57 1.65 16 20 C 0.53 7.52 6.88 -10.99 -0.08 7.45 16 21 O -0.54 -9.66 14.39 5.56 0.08 -9.58 16 22 C -0.07 -0.80 2.05 -92.92 -0.19 -0.99 16 23 H 0.09 0.85 7.16 -51.93 -0.37 0.48 16 24 C -0.15 -1.71 7.93 37.16 0.29 -1.42 16 25 C -0.07 -0.85 4.45 -104.62 -0.47 -1.31 16 26 C -0.12 -1.27 9.67 -39.58 -0.38 -1.65 16 27 C -0.13 -1.33 10.05 -39.59 -0.40 -1.73 16 28 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 29 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 30 C -0.08 -1.07 7.95 -39.58 -0.31 -1.39 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.43 6.94 -51.93 -0.36 0.07 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 36 H 0.35 5.32 5.66 -39.29 -0.22 5.10 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.56 6.80 -51.92 -0.35 0.20 16 43 H 0.07 0.96 7.26 -51.93 -0.38 0.58 16 44 H 0.07 0.72 3.47 -51.93 -0.18 0.54 16 45 H 0.08 1.19 7.70 -51.93 -0.40 0.79 16 46 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 47 H 0.12 1.00 7.95 -52.48 -0.42 0.58 16 48 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 51 H 0.12 1.95 7.50 -52.49 -0.39 1.56 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -33.75 408.34 -8.81 -42.56 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.75 Total: 15.46 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.94 Total: 0.57 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.42 Total: -55.91 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.17 Total: -24.92 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.75 -8.81 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482353930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.297 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds