Wall clock time and date at job start Wed Apr 1 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46984 * 2 1 4 4 C 1.52994 * 109.47101 * 120.00455 * 2 1 3 5 5 N 1.46905 * 109.46795 * 173.09572 * 4 2 1 6 6 C 1.46907 * 110.99965 * 183.87568 * 5 4 2 7 7 C 1.50691 * 109.47226 * 179.97438 * 6 5 4 8 8 O 1.21294 * 120.00084 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00188 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00281 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00107 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00110 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00470 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 120.00099 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46922 * 60.00102 * 14 12 10 16 16 H 1.48504 * 109.46947 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47024 * 300.00138 * 14 12 10 18 18 N 1.46505 * 109.46987 * 240.00279 * 2 1 3 19 19 C 1.46495 * 120.00093 * 293.35577 * 18 2 1 20 20 C 1.34777 * 119.99992 * 113.35518 * 18 2 1 21 21 O 1.21279 * 120.00216 * 183.07994 * 20 18 2 22 22 C 1.50699 * 120.00007 * 3.07627 * 20 18 2 23 23 H 1.08997 * 109.47226 * 306.50346 * 22 20 18 24 24 C 1.52997 * 109.46970 * 66.50064 * 22 20 18 25 25 C 1.50702 * 109.47106 * 186.50190 * 22 20 18 26 26 C 1.38234 * 120.00281 * 120.00128 * 25 22 20 27 27 C 1.38233 * 120.00160 * 179.97438 * 26 25 22 28 28 C 1.38233 * 120.00031 * 359.97438 * 27 26 25 29 29 C 1.38241 * 119.99853 * 359.97438 * 28 27 26 30 30 C 1.38231 * 120.00072 * 0.07285 * 29 28 27 31 31 H 1.08999 * 109.46953 * 299.99867 * 1 2 3 32 32 H 1.09000 * 109.47285 * 59.99710 * 1 2 3 33 33 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47140 * 293.08906 * 4 2 1 35 35 H 1.08990 * 109.47501 * 53.09650 * 4 2 1 36 36 H 1.00895 * 111.00110 * 59.92657 * 5 4 2 37 37 H 1.09004 * 109.46801 * 300.00193 * 6 5 4 38 38 H 1.08997 * 109.46615 * 59.99728 * 6 5 4 39 39 H 0.96997 * 119.99741 * 0.02562 * 9 7 6 40 40 H 0.96998 * 120.00688 * 179.97438 * 13 12 10 41 41 H 1.09006 * 109.47156 * 274.14641 * 19 18 2 42 42 H 1.09011 * 109.47349 * 34.14258 * 19 18 2 43 43 H 1.08998 * 109.47663 * 154.13982 * 19 18 2 44 44 H 1.09004 * 109.47363 * 291.03162 * 24 22 20 45 45 H 1.09006 * 109.47188 * 51.03128 * 24 22 20 46 46 H 1.09002 * 109.47108 * 171.03055 * 24 22 20 47 47 H 1.08005 * 119.99348 * 359.97438 * 26 25 22 48 48 H 1.08003 * 119.99943 * 180.02562 * 27 26 25 49 49 H 1.07995 * 120.00018 * 179.71631 * 28 27 26 50 50 H 1.08002 * 119.99872 * 179.97438 * 29 28 27 51 51 H 1.07999 * 120.00171 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.4996 -0.8671 1.1687 6 6 4.0153 -1.6372 2.3085 7 6 5.5121 -1.7662 2.1915 8 8 6.0924 -1.2656 1.2514 9 7 6.2062 -2.4380 3.1314 10 6 7.5678 -2.5558 3.0247 11 1 8.0845 -2.1101 2.1876 12 6 8.2833 -3.2488 3.9935 13 7 7.6547 -3.7917 5.0118 14 14 10.1387 -3.4100 3.8477 15 1 10.7542 -2.0587 3.8453 16 1 10.6599 -4.1888 4.9997 17 1 10.4768 -4.1103 2.5825 18 7 2.0183 -0.6906 -1.1963 19 6 1.7883 -2.1284 -1.3572 20 6 2.6792 -0.0031 -2.1487 21 8 3.0344 -0.5627 -3.1643 22 6 2.9766 1.4611 -1.9517 23 1 2.0534 1.9911 -1.7176 24 6 3.9678 1.6294 -0.7984 25 6 3.5743 2.0266 -3.2143 26 6 2.9408 3.0622 -3.8753 27 6 3.4893 3.5813 -5.0331 28 6 4.6716 3.0650 -5.5297 29 6 5.3056 2.0300 -4.8680 30 6 4.7566 1.5103 -3.7107 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7811 -0.1411 2.1349 35 1 1.5794 -1.7070 1.3130 36 1 3.9501 0.0335 1.1074 37 1 3.7660 -1.1232 3.2368 38 1 3.5644 -2.6295 2.3103 39 1 5.7421 -2.8387 3.8831 40 1 8.1541 -4.2758 5.6880 41 1 2.5831 -2.6818 -0.8570 42 1 0.8274 -2.3943 -0.9163 43 1 1.7830 -2.3791 -2.4180 44 1 3.4800 1.3689 0.1410 45 1 4.8244 0.9741 -0.9568 46 1 4.3052 2.6651 -0.7575 47 1 2.0173 3.4658 -3.4870 48 1 2.9945 4.3907 -5.5494 49 1 5.0977 3.4675 -6.4367 50 1 6.2291 1.6264 -5.2562 51 1 5.2518 0.7015 -3.1941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482353930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:03 Heat of formation + Delta-G solvation = -60.068762 kcal Electronic energy + Delta-G solvation = -31246.049936 eV Core-core repulsion = 27144.598379 eV Total energy + Delta-G solvation = -4101.451557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58547 -40.16561 -39.73423 -38.11334 -36.13007 -35.39956 -35.18732 -33.26794 -32.14760 -31.76010 -30.57985 -28.97641 -27.97724 -26.69357 -25.45808 -24.63792 -23.48838 -22.89150 -21.95311 -21.11361 -20.05999 -19.77035 -18.26317 -17.99731 -17.60067 -16.98167 -16.73915 -16.48268 -16.38741 -16.05658 -15.88325 -15.59127 -15.35120 -15.24162 -14.92564 -14.61299 -14.42961 -14.19306 -14.09454 -14.00711 -13.59805 -13.52467 -13.41745 -13.26983 -13.05508 -12.98477 -12.91930 -12.74373 -12.73880 -12.53131 -12.45429 -12.36911 -12.14055 -11.85629 -11.80150 -11.57414 -11.50970 -10.66186 -10.34580 -10.01766 -9.75534 -9.61011 -9.55248 -9.22411 -8.47776 -5.96071 0.45132 0.55671 1.37634 1.39483 1.50098 1.69972 2.06252 2.14090 2.27812 2.90347 2.94937 3.19803 3.49702 3.54716 3.70550 3.79850 3.97405 4.11346 4.16895 4.23922 4.26721 4.30675 4.33145 4.38002 4.48339 4.51157 4.58731 4.62231 4.67864 4.68517 4.71479 4.77732 4.80656 4.86583 4.91167 5.00960 5.06434 5.14505 5.18672 5.27227 5.37087 5.39449 5.58101 5.64853 5.66881 5.74832 5.88800 6.10873 6.15188 6.41803 6.52767 6.60092 7.12419 7.28240 7.56633 8.12769 8.69385 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.002741 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.849399 B =10212.987166 C =12051.128535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.108 0.892 4 C 0.045 3.955 5 N -0.683 5.683 6 C 0.067 3.933 7 C 0.436 3.564 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.333 4.333 11 H 0.075 0.925 12 C -0.011 4.011 13 N -0.920 5.920 14 Si 0.989 3.011 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.275 1.275 18 N -0.586 5.586 19 C 0.092 3.908 20 C 0.514 3.486 21 O -0.585 6.585 22 C -0.061 4.061 23 H 0.133 0.867 24 C -0.136 4.136 25 C -0.082 4.082 26 C -0.116 4.116 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.141 4.141 30 C -0.106 4.106 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.342 0.658 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.039 0.961 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.150 0.850 48 H 0.152 0.848 49 H 0.143 0.857 50 H 0.123 0.877 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 13.905 -9.549 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.126 0.874 4 C -0.085 4.085 5 N -0.318 5.318 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.508 6.508 9 N -0.212 5.212 10 C -0.463 4.463 11 H 0.093 0.907 12 C -0.211 4.211 13 N -0.561 5.561 14 Si 0.813 3.187 15 H -0.196 1.196 16 H -0.193 1.193 17 H -0.201 1.201 18 N -0.317 5.317 19 C -0.051 4.051 20 C 0.303 3.697 21 O -0.465 6.465 22 C -0.081 4.081 23 H 0.150 0.850 24 C -0.193 4.193 25 C -0.083 4.083 26 C -0.134 4.134 27 C -0.144 4.144 28 C -0.143 4.143 29 C -0.159 4.159 30 C -0.124 4.124 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.167 0.833 48 H 0.169 0.831 49 H 0.161 0.839 50 H 0.141 0.859 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.554 13.257 -10.915 25.281 hybrid contribution 1.270 -0.470 1.138 1.769 sum -17.284 12.787 -9.777 23.618 Atomic orbital electron populations 1.22114 0.91963 1.03503 1.03826 1.21718 0.95918 0.97278 0.83123 0.87428 1.22515 0.86828 1.02057 0.97065 1.60124 1.05217 1.23555 1.42861 1.21511 0.90323 1.00961 0.93767 1.20989 0.90736 0.82459 0.83458 1.90510 1.72359 1.52924 1.35037 1.41919 1.07148 1.48663 1.23437 1.19580 0.83636 1.33864 1.09206 0.90666 1.25983 1.04653 0.95772 0.94716 1.69653 1.38325 1.35855 1.12220 0.85048 0.77133 0.78567 0.77952 1.19649 1.19292 1.20063 1.47617 1.55178 1.09032 1.19836 1.21479 1.01584 0.80516 1.01486 1.20875 0.76601 0.89809 0.82406 1.90665 1.53631 1.71954 1.30300 1.20278 1.01437 0.91831 0.94597 0.84977 1.21924 0.98153 1.02947 0.96295 1.19538 0.95192 0.97119 0.96410 1.21332 1.00404 0.95912 0.95728 1.21466 0.95992 1.00671 0.96283 1.21446 0.96153 0.96320 1.00391 1.21332 1.00827 0.97984 0.95793 1.20954 0.96306 0.98299 0.96863 0.88876 0.91665 0.91691 0.91472 0.89764 0.83660 0.91199 0.88096 0.76981 0.91293 0.94197 0.88714 0.92775 0.90202 0.94696 0.90001 0.83255 0.83053 0.83897 0.85883 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.27 71.98 0.67 -0.82 16 2 C 0.12 1.93 2.19 44.99 0.10 2.03 16 3 H 0.11 1.48 4.06 -2.39 -0.01 1.47 16 4 C 0.04 0.80 4.80 86.30 0.41 1.21 16 5 N -0.68 -19.55 5.76 -517.94 -2.98 -22.53 16 6 C 0.07 2.15 6.16 85.55 0.53 2.68 16 7 C 0.44 20.59 7.82 87.65 0.69 21.28 16 8 O -0.62 -34.69 15.78 -3.07 -0.05 -34.74 16 9 N -0.57 -29.47 5.29 -307.00 -1.62 -31.09 16 10 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -49.78 13.05 21.66 0.28 -49.49 16 14 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 N -0.59 -13.89 2.44 -822.58 -2.01 -15.90 16 19 C 0.09 2.25 9.49 127.77 1.21 3.46 16 20 C 0.51 15.12 6.88 87.66 0.60 15.73 16 21 O -0.59 -22.67 14.39 -3.03 -0.04 -22.71 16 22 C -0.06 -1.38 2.05 -12.29 -0.03 -1.41 16 23 H 0.13 1.97 7.16 -2.39 -0.02 1.95 16 24 C -0.14 -3.25 7.93 71.98 0.57 -2.68 16 25 C -0.08 -2.11 4.45 -19.87 -0.09 -2.20 16 26 C -0.12 -2.29 9.67 22.27 0.22 -2.07 16 27 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 28 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 29 C -0.14 -3.73 10.05 22.27 0.22 -3.50 16 30 C -0.11 -3.27 7.95 22.27 0.18 -3.09 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.63 6.94 -2.39 -0.02 0.61 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.42 7.78 -2.39 -0.02 1.40 16 36 H 0.34 10.39 5.66 -89.70 -0.51 9.88 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 40 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 41 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.09 1.60 6.80 -2.38 -0.02 1.58 16 43 H 0.05 1.51 7.26 -2.39 -0.02 1.49 16 44 H 0.08 1.65 3.47 -2.39 -0.01 1.64 16 45 H 0.03 1.14 7.70 -2.38 -0.02 1.12 16 46 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 47 H 0.15 1.92 7.95 -2.91 -0.02 1.90 16 48 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 49 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 50 H 0.12 2.96 8.06 -2.91 -0.02 2.93 16 51 H 0.09 3.24 7.50 -2.91 -0.02 3.22 16 Total: -1.00 -79.32 408.34 2.33 -76.99 By element: Atomic # 1 Polarization: 46.45 SS G_CDS: -0.28 Total: 46.16 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 7.01 Total: 7.68 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -6.33 Total: -119.02 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -0.09 Total: -57.45 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -79.32 2.33 -76.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482353930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.922 kcal (2) G-P(sol) polarization free energy of solvation -79.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds