Wall clock time and date at job start Wed Apr 1 2020 04:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35903 * 117.00020 * 2 1 4 4 C 1.39143 * 120.47532 * 180.02562 * 3 2 1 5 5 C 1.38535 * 118.37658 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.21957 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.55448 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47109 * 125.00292 * 7 6 5 9 9 O 1.21283 * 119.99788 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99836 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.60689 * 359.97438 * 10 8 7 12 12 C 1.53196 * 108.77131 * 233.57988 * 11 10 8 13 13 C 1.53039 * 109.33748 * 305.41286 * 12 11 10 14 14 C 1.53045 * 109.53694 * 61.35198 * 13 12 11 15 15 H 1.08993 * 109.49902 * 58.61908 * 14 13 12 16 16 C 1.53003 * 109.49562 * 178.68194 * 14 13 12 17 17 H 1.08998 * 109.47042 * 59.99992 * 16 14 13 18 18 C 1.52998 * 109.47016 * 299.99817 * 16 14 13 19 19 N 1.46504 * 109.46948 * 179.97438 * 16 14 13 20 20 C 1.36935 * 119.99807 * 205.00239 * 19 16 14 21 21 H 1.08001 * 120.00018 * 359.97438 * 20 19 16 22 22 C 1.38814 * 119.99992 * 180.02562 * 20 19 16 23 23 N 1.31623 * 119.99618 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47242 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47468 * 119.99828 * 24 22 20 27 27 H 1.48498 * 109.47268 * 239.99844 * 24 22 20 28 28 C 1.46928 * 120.62574 * 180.02562 * 10 8 7 29 29 N 1.31853 * 120.88703 * 0.26260 * 6 5 4 30 30 C 1.31838 * 121.77962 * 359.47157 * 29 6 5 31 31 H 1.09000 * 109.46598 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46992 * 299.99624 * 1 2 3 33 33 H 1.08993 * 109.46740 * 59.99793 * 1 2 3 34 34 H 1.07998 * 120.80725 * 0.04309 * 4 3 2 35 35 H 1.07995 * 120.39063 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.47247 * 5.00200 * 7 6 5 37 37 H 1.09005 * 109.47173 * 245.00005 * 7 6 5 38 38 H 1.08996 * 109.56502 * 113.80682 * 11 10 8 39 39 H 1.09001 * 109.61713 * 353.38104 * 11 10 8 40 40 H 1.09002 * 109.49815 * 185.44599 * 12 11 10 41 41 H 1.09000 * 109.49595 * 65.37996 * 12 11 10 42 42 H 1.09001 * 109.45915 * 181.36781 * 13 12 11 43 43 H 1.08998 * 109.46049 * 301.34328 * 13 12 11 44 44 H 1.08998 * 109.47359 * 299.99982 * 18 16 14 45 45 H 1.08993 * 109.47197 * 60.00503 * 18 16 14 46 46 H 1.09004 * 109.46733 * 180.02562 * 18 16 14 47 47 H 0.96999 * 119.99837 * 24.99545 * 19 16 14 48 48 H 0.97003 * 119.99574 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58597 * 6.59803 * 28 10 8 50 50 H 1.09001 * 109.69741 * 246.24622 * 28 10 8 51 51 H 1.07996 * 119.66095 * 180.26938 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4350 1.2952 -0.0005 5 6 4.0183 2.5518 0.0000 6 6 3.2080 3.6721 0.0006 7 6 3.8345 5.0426 0.0018 8 6 3.3025 5.8392 -1.1617 9 8 2.4938 5.3429 -1.9172 10 7 3.7254 7.1030 -1.3626 11 6 4.7042 7.7175 -0.4554 12 6 4.1375 9.0463 0.0545 13 6 3.7487 9.9225 -1.1385 14 6 2.6655 9.2185 -1.9591 15 1 1.7984 9.0255 -1.3275 16 6 2.2541 10.1096 -3.1329 17 1 3.1213 10.3014 -3.7648 18 6 1.7084 11.4357 -2.5996 19 7 1.2177 9.4349 -3.9183 20 6 1.0495 9.7466 -5.2411 21 1 1.6806 10.4901 -5.7052 22 6 0.0671 9.1078 -5.9852 23 7 -0.7023 8.2021 -5.4194 24 14 -0.1629 9.5335 -7.7894 25 1 0.8212 10.5741 -8.1818 26 1 0.0473 8.3176 -8.6157 27 1 -1.5395 10.0468 -8.0054 28 6 3.2154 7.8923 -2.4922 29 7 1.8944 3.5573 0.0057 30 6 1.3002 2.3805 0.0002 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8899 34 1 4.0433 0.4029 -0.0017 35 1 5.0933 2.6551 -0.0008 36 1 4.9167 4.9475 -0.0875 37 1 3.5902 5.5530 0.9335 38 1 5.6354 7.8993 -0.9920 39 1 4.8900 7.0520 0.3876 40 1 4.8920 9.5585 0.6515 41 1 3.2568 8.8548 0.6676 42 1 3.3677 10.8781 -0.7783 43 1 4.6246 10.0933 -1.7643 44 1 0.8412 11.2440 -1.9677 45 1 2.4798 11.9375 -2.0155 46 1 1.4149 12.0703 -3.4358 47 1 0.6508 8.7674 -3.5014 48 1 -1.3885 7.7554 -5.9395 49 1 2.4192 7.3415 -2.9928 50 1 4.0230 8.0888 -3.1973 51 1 0.2216 2.3264 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482476365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:01 Heat of formation + Delta-G solvation = -52.580977 kcal Electronic energy + Delta-G solvation = -30864.317266 eV Core-core repulsion = 26763.190404 eV Total energy + Delta-G solvation = -4101.126862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.80412 -41.04069 -39.39884 -38.71913 -36.89217 -34.66925 -33.47858 -33.39429 -33.01724 -31.41393 -30.06758 -28.97807 -28.09875 -26.48801 -25.60690 -24.51806 -24.17263 -23.16499 -22.18872 -21.02806 -19.86931 -19.16286 -19.12087 -18.33796 -17.82486 -17.26625 -16.83657 -16.77859 -16.44060 -16.27384 -15.61735 -15.55824 -15.30737 -15.17045 -15.06623 -14.92828 -14.51148 -14.20998 -14.05710 -13.96104 -13.87115 -13.80050 -13.39381 -13.13912 -13.01502 -12.95049 -12.82059 -12.78710 -12.52442 -12.34844 -12.30438 -12.10116 -11.94311 -11.78269 -11.63569 -11.33729 -11.15618 -10.97598 -10.76450 -10.62443 -10.32283 -9.51773 -9.36083 -8.99129 -7.92303 -5.21023 0.10038 0.31628 1.42843 1.44986 1.54616 1.76109 2.08440 2.21771 2.55433 2.79328 3.31560 3.41020 3.64089 3.65867 3.73120 3.83457 3.90290 4.00786 4.04715 4.20340 4.24048 4.30522 4.31167 4.36962 4.37748 4.47984 4.50894 4.56977 4.63018 4.64686 4.69130 4.72768 4.83228 4.89350 4.95301 4.98160 5.01325 5.06157 5.09275 5.10391 5.22505 5.30845 5.41818 5.50665 5.52337 5.58006 5.62447 5.68903 6.17974 6.28480 6.57128 7.06030 7.33146 7.35312 8.11973 8.33669 9.31541 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.002883 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.077698 B = 9710.961491 C =12112.785615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.065 3.935 4 C -0.115 4.115 5 C -0.115 4.115 6 C 0.080 3.920 7 C -0.073 4.073 8 C 0.502 3.498 9 O -0.584 6.584 10 N -0.612 5.612 11 C 0.098 3.902 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.089 4.089 15 H 0.044 0.956 16 C 0.171 3.829 17 H 0.047 0.953 18 C -0.153 4.153 19 N -0.738 5.738 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.084 4.084 23 N -0.973 5.973 24 Si 0.971 3.029 25 H -0.261 1.261 26 H -0.299 1.299 27 H -0.295 1.295 28 C 0.133 3.867 29 N -0.464 5.464 30 C 0.001 3.999 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.169 0.831 35 H 0.185 0.815 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.082 0.918 46 H 0.033 0.967 47 H 0.366 0.634 48 H 0.246 0.754 49 H 0.041 0.959 50 H 0.061 0.939 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.845 -9.368 20.453 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.017 3.983 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.059 4.059 7 C -0.113 4.113 8 C 0.291 3.709 9 O -0.463 6.463 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.167 4.167 13 C -0.147 4.147 14 C -0.109 4.109 15 H 0.063 0.937 16 C 0.063 3.937 17 H 0.065 0.935 18 C -0.213 4.213 19 N -0.378 5.378 20 C -0.361 4.361 21 H 0.097 0.903 22 C -0.276 4.276 23 N -0.625 5.625 24 Si 0.801 3.199 25 H -0.185 1.185 26 H -0.226 1.226 27 H -0.222 1.222 28 C 0.010 3.990 29 N -0.174 5.174 30 C -0.157 4.157 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.187 0.813 35 H 0.202 0.798 36 H 0.172 0.828 37 H 0.149 0.851 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.053 0.947 47 H 0.197 0.803 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.080 0.920 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.042 -8.991 19.901 27.097 hybrid contribution -1.404 -0.790 -1.487 2.192 sum 14.638 -9.781 18.414 25.476 Atomic orbital electron populations 1.23370 0.76454 1.05988 1.02013 1.86031 1.23327 1.25590 1.88504 1.20274 0.94189 0.85610 0.98187 1.21290 0.91255 1.00036 1.01526 1.22199 1.02973 0.90479 0.97798 1.20994 0.88998 0.96188 0.99747 1.20693 1.02983 0.90095 0.97520 1.21250 0.80887 0.81999 0.86745 1.90777 1.35420 1.70805 1.49276 1.48300 1.44331 1.12688 1.29192 1.22186 0.90861 0.95562 0.93683 1.21934 1.02106 0.95389 0.97299 1.21619 0.97376 0.98919 0.96776 1.21578 0.98489 0.94283 0.96539 0.93749 1.20504 0.90622 0.91545 0.91057 0.93467 1.22315 1.00694 0.98204 1.00040 1.42719 1.39743 1.47223 1.08067 1.19663 1.12462 1.16488 0.87535 0.90347 1.25604 0.99477 0.99951 1.02528 1.69888 1.24596 1.31120 1.36884 0.85091 0.77383 0.77133 0.80326 1.18471 1.22630 1.22193 1.21208 0.97973 0.91783 0.88069 1.67246 1.13431 1.27548 1.09134 1.23016 1.01090 0.87379 1.04254 0.85356 0.91511 0.92846 0.81316 0.79774 0.82802 0.85125 0.89342 0.86434 0.86989 0.92534 0.90243 0.90546 0.94731 0.89929 0.94733 0.80294 0.94472 0.94011 0.92044 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.36 16 2 O -0.32 -6.91 10.51 -92.46 -0.97 -7.88 16 3 C 0.07 1.58 6.71 22.60 0.15 1.73 16 4 C -0.11 -2.25 10.13 22.56 0.23 -2.02 16 5 C -0.12 -2.11 9.70 22.35 0.22 -1.89 16 6 C 0.08 2.04 5.76 42.56 0.25 2.28 16 7 C -0.07 -1.44 4.44 29.10 0.13 -1.32 16 8 C 0.50 16.31 7.63 87.66 0.67 16.98 16 9 O -0.58 -27.31 14.76 -3.04 -0.04 -27.35 16 10 N -0.61 -17.28 2.97 -818.96 -2.43 -19.72 16 11 C 0.10 1.48 6.34 86.36 0.55 2.03 16 12 C -0.13 -1.96 6.08 30.67 0.19 -1.77 16 13 C -0.11 -2.33 4.85 30.62 0.15 -2.19 16 14 C -0.09 -2.97 1.97 -10.73 -0.02 -2.99 16 15 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 16 C 0.17 6.86 2.47 44.99 0.11 6.97 16 17 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 18 C -0.15 -5.41 9.14 71.98 0.66 -4.75 16 19 N -0.74 -39.57 4.52 -322.93 -1.46 -41.04 16 20 C -0.23 -13.36 9.93 84.03 0.83 -12.52 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.08 -5.14 5.50 84.86 0.47 -4.68 16 23 N -0.97 -64.80 13.06 21.65 0.28 -64.52 16 24 Si 0.97 48.99 29.55 68.60 2.03 51.02 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 27 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 28 C 0.13 4.94 5.47 86.35 0.47 5.41 16 29 N -0.46 -15.27 9.23 -183.48 -1.69 -16.96 16 30 C 0.00 0.02 10.22 84.81 0.87 0.89 16 31 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 0.88 7.68 -2.39 -0.02 0.87 16 33 H 0.05 0.88 7.68 -2.39 -0.02 0.86 16 34 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 35 H 0.19 1.59 7.94 -2.91 -0.02 1.57 16 36 H 0.15 1.44 7.67 -2.38 -0.02 1.43 16 37 H 0.13 1.96 7.69 -2.38 -0.02 1.94 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.12 0.93 5.93 -2.39 -0.01 0.91 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.56 6.36 -2.39 -0.02 1.55 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 44 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.08 2.19 6.40 -2.39 -0.02 2.18 16 46 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.37 22.09 7.62 -92.71 -0.71 21.38 16 48 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 49 H 0.04 2.09 6.52 -2.39 -0.02 2.08 16 50 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.16 4.08 6.32 -2.91 -0.02 4.06 16 Total: -1.00 -91.51 405.46 2.96 -88.55 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.23 Total: 34.39 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 7.02 Total: 3.51 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -5.31 Total: -142.23 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.02 Total: -35.24 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -91.51 2.96 -88.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482476365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.969 kcal (2) G-P(sol) polarization free energy of solvation -91.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds