Wall clock time and date at job start Wed Apr 1 2020 04:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35912 * 116.99932 * 2 1 4 4 C 1.39140 * 120.46999 * 179.97438 * 3 2 1 5 5 C 1.38539 * 118.37128 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.22020 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.55440 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46989 * 125.00082 * 7 6 5 9 9 O 1.21276 * 120.00166 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99585 * 179.97438 * 8 7 6 11 11 C 1.46957 * 120.65462 * 359.81587 * 10 8 7 12 12 C 1.53197 * 108.89063 * 233.53473 * 11 10 8 13 13 C 1.53040 * 109.31110 * 305.44560 * 12 11 10 14 14 C 1.53044 * 109.53662 * 61.36306 * 13 12 11 15 15 H 1.08997 * 109.49691 * 58.58900 * 14 13 12 16 16 C 1.53008 * 109.52383 * 178.66719 * 14 13 12 17 17 H 1.09003 * 109.46951 * 304.85474 * 16 14 13 18 18 C 1.52998 * 109.46793 * 64.85204 * 16 14 13 19 19 N 1.46490 * 109.46919 * 184.85490 * 16 14 13 20 20 C 1.36946 * 119.99823 * 154.99984 * 19 16 14 21 21 H 1.07994 * 119.99649 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99922 * 179.97438 * 20 19 16 23 23 N 1.31620 * 120.00222 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99745 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47200 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47120 * 120.00404 * 24 22 20 27 27 H 1.48500 * 109.47299 * 240.00350 * 24 22 20 28 28 C 1.46926 * 120.62730 * 180.02562 * 10 8 7 29 29 N 1.31849 * 120.88786 * 0.25624 * 6 5 4 30 30 C 1.31843 * 121.77740 * 359.47194 * 29 6 5 31 31 H 1.09000 * 109.47321 * 300.00348 * 1 2 3 32 32 H 1.09001 * 109.46736 * 60.00664 * 1 2 3 33 33 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 34 34 H 1.07993 * 120.81649 * 0.04649 * 4 3 2 35 35 H 1.07993 * 120.38795 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.46970 * 4.99870 * 7 6 5 37 37 H 1.08999 * 109.46766 * 245.00272 * 7 6 5 38 38 H 1.09001 * 109.46843 * 113.75468 * 11 10 8 39 39 H 1.08997 * 109.71602 * 353.46961 * 11 10 8 40 40 H 1.08995 * 109.50005 * 185.49506 * 12 11 10 41 41 H 1.08994 * 109.52103 * 65.41136 * 12 11 10 42 42 H 1.08994 * 109.45892 * 301.34445 * 13 12 11 43 43 H 1.09000 * 109.46209 * 181.38193 * 13 12 11 44 44 H 1.09007 * 109.46691 * 180.02562 * 18 16 14 45 45 H 1.08996 * 109.47523 * 299.99813 * 18 16 14 46 46 H 1.08994 * 109.47258 * 60.00707 * 18 16 14 47 47 H 0.96994 * 120.00742 * 334.99387 * 19 16 14 48 48 H 0.96998 * 119.99831 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.58861 * 6.60251 * 28 10 8 50 50 H 1.08996 * 109.58519 * 246.32142 * 28 10 8 51 51 H 1.08001 * 119.65110 * 180.27031 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0182 2.5518 0.0011 6 6 3.2079 3.6720 0.0016 7 6 3.8345 5.0427 0.0027 8 6 3.3025 5.8391 -1.1608 9 8 2.4946 5.3426 -1.9167 10 7 3.7246 7.1033 -1.3611 11 6 4.7001 7.7206 -0.4517 12 6 4.1330 9.0501 0.0558 13 6 3.7467 9.9246 -1.1392 14 6 2.6646 9.2199 -1.9606 15 1 1.7965 9.0279 -1.3300 16 6 2.2549 10.1091 -3.1365 17 1 1.9467 11.0858 -2.7633 18 6 3.4424 10.2775 -4.0864 19 7 1.1399 9.4865 -3.8541 20 6 0.2777 10.2607 -4.5839 21 1 0.4196 11.3303 -4.6299 22 6 -0.7786 9.6707 -5.2643 23 7 -0.9519 8.3672 -5.2077 24 14 -1.9551 10.7269 -6.2592 25 1 -1.5453 12.1509 -6.1613 26 1 -1.9224 10.2995 -7.6809 27 1 -3.3324 10.5700 -5.7266 28 6 3.2147 7.8926 -2.4907 29 7 1.8944 3.5573 0.0066 30 6 1.3002 2.3804 0.0010 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 4.0432 0.4030 0.0002 35 1 5.0932 2.6551 0.0011 36 1 4.9166 4.9475 -0.0865 37 1 3.5902 5.5530 0.9344 38 1 5.6321 7.9016 -0.9872 39 1 4.8869 7.0569 0.3925 40 1 4.8867 9.5628 0.6533 41 1 3.2512 8.8600 0.6677 42 1 4.6238 10.0942 -1.7636 43 1 3.3656 10.8810 -0.7812 44 1 3.1506 10.9113 -4.9239 45 1 4.2720 10.7407 -3.5524 46 1 3.7505 9.3008 -4.4595 47 1 1.0122 8.5259 -3.8125 48 1 -1.6902 7.9550 -5.6829 49 1 2.4190 7.3415 -2.9919 50 1 4.0236 8.0877 -3.1947 51 1 0.2216 2.3265 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482476366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:05 Heat of formation + Delta-G solvation = -24.062938 kcal Electronic energy + Delta-G solvation = -30883.753212 eV Core-core repulsion = 26783.862984 eV Total energy + Delta-G solvation = -4099.890227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.91216 -39.98246 -38.48134 -37.53918 -35.34908 -33.01918 -32.55536 -32.38193 -31.80274 -29.82879 -28.51461 -27.77890 -27.25869 -25.14120 -24.36465 -23.52338 -23.10452 -22.32164 -21.07089 -19.29299 -18.51682 -18.34039 -17.46780 -17.09218 -16.75634 -16.27368 -16.06087 -15.38378 -15.24051 -14.76342 -14.58077 -14.39592 -14.31816 -14.04597 -13.78888 -13.72125 -13.31777 -13.15219 -13.03769 -12.83224 -12.57722 -12.41496 -12.33187 -12.13333 -12.10409 -11.77785 -11.56521 -11.46682 -11.06080 -10.94906 -10.81506 -10.55585 -10.37124 -10.16273 -10.14784 -9.88135 -9.79681 -9.56538 -9.46719 -9.35870 -8.83296 -8.49885 -8.30570 -6.86273 -5.65643 -2.95233 0.95869 1.16593 2.89623 2.93432 3.15245 3.48823 3.53632 3.56483 3.69215 4.16693 4.46900 4.48668 4.61523 4.65722 4.76571 4.82227 4.89070 4.92922 4.97409 5.06797 5.10448 5.22571 5.25662 5.29349 5.32424 5.41854 5.42063 5.51257 5.65852 5.72672 5.77849 5.83576 5.89498 5.91529 5.94241 6.03410 6.14868 6.20514 6.30792 6.31588 6.44680 6.49924 6.65823 6.73014 6.86182 6.97339 6.97719 7.19531 7.64148 7.78775 7.94372 8.48077 8.51851 9.62665 10.21806 10.55757 11.56424 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.002811 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.851399 B = 9958.522741 C =12458.816364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.071 3.929 4 C -0.110 4.110 5 C -0.127 4.127 6 C 0.107 3.893 7 C -0.085 4.085 8 C 0.514 3.486 9 O -0.512 6.512 10 N -0.615 5.615 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.073 0.927 16 C 0.180 3.820 17 H 0.048 0.952 18 C -0.169 4.169 19 N -0.725 5.725 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.928 5.928 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.118 3.882 29 N -0.416 5.416 30 C 0.029 3.971 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.038 0.962 46 H 0.049 0.951 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.098 0.902 50 H 0.068 0.932 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.680 -11.450 16.829 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.227 6.227 3 C 0.023 3.977 4 C -0.136 4.136 5 C -0.147 4.147 6 C -0.032 4.032 7 C -0.126 4.126 8 C 0.301 3.699 9 O -0.386 6.386 10 N -0.349 5.349 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.092 0.908 16 C 0.070 3.930 17 H 0.066 0.934 18 C -0.229 4.229 19 N -0.367 5.367 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.577 5.577 24 Si 0.735 3.265 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.004 4.004 29 N -0.125 5.125 30 C -0.130 4.130 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.117 0.883 50 H 0.086 0.914 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.683 -11.063 16.327 24.005 hybrid contribution -0.491 -0.344 -0.628 0.869 sum 13.192 -11.408 15.699 23.466 Atomic orbital electron populations 1.23137 0.77854 1.04277 1.01934 1.86046 1.21792 1.26144 1.88676 1.20103 0.93306 0.85776 0.98493 1.20825 0.91643 0.98647 1.02509 1.21757 1.01111 0.91670 1.00178 1.20483 0.89350 0.94271 0.99133 1.20567 1.00739 0.91841 0.99431 1.20222 0.81841 0.81637 0.86235 1.90792 1.32128 1.69229 1.46454 1.48173 1.44210 1.13022 1.29525 1.21713 0.91684 0.94988 0.93202 1.21921 1.01311 0.95644 0.98427 1.21598 0.99075 0.98350 0.96139 1.21768 0.97785 0.94917 0.97893 0.90821 1.20171 0.88372 0.94762 0.89724 0.93414 1.22574 0.98572 1.00999 1.00763 1.42513 1.29142 1.07326 1.57752 1.19259 1.04751 0.90925 1.21977 0.91241 1.24754 0.99294 0.95688 1.01296 1.69695 1.32599 1.08329 1.47034 0.86166 0.81161 0.79304 0.79853 1.20650 1.21982 1.21975 1.21783 0.99852 0.91591 0.87142 1.67322 1.11380 1.26294 1.07526 1.22921 1.00625 0.86875 1.02593 0.92348 0.92075 0.87955 0.84078 0.84132 0.87660 0.87379 0.91485 0.90251 0.91058 0.91523 0.91573 0.91724 0.92956 0.94351 0.93239 0.78035 0.93615 0.88347 0.91370 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.33 10.51 -19.46 -0.20 -3.54 16 3 C 0.07 0.83 6.71 -39.08 -0.26 0.57 16 4 C -0.11 -1.14 10.13 -39.14 -0.40 -1.54 16 5 C -0.13 -1.29 9.70 -39.46 -0.38 -1.68 16 6 C 0.11 1.38 5.76 -82.58 -0.48 0.91 16 7 C -0.09 -0.93 4.45 -29.03 -0.13 -1.06 16 8 C 0.51 8.12 7.63 -10.98 -0.08 8.03 16 9 O -0.51 -10.89 14.76 5.56 0.08 -10.80 16 10 N -0.61 -8.70 2.98 -172.77 -0.51 -9.21 16 11 C 0.11 1.02 6.33 -3.69 -0.02 1.00 16 12 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 13 C -0.11 -1.40 4.89 -26.69 -0.13 -1.53 16 14 C -0.10 -1.73 2.27 -90.52 -0.21 -1.94 16 15 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 16 C 0.18 3.60 2.67 -67.93 -0.18 3.41 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 C -0.17 -3.03 8.77 37.16 0.33 -2.70 16 19 N -0.73 -18.73 5.06 -53.43 -0.27 -19.00 16 20 C -0.24 -6.78 9.93 -15.05 -0.15 -6.93 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -29.36 13.06 55.49 0.72 -28.63 16 24 Si 0.90 23.09 29.55 -169.99 -5.02 18.06 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 C 0.12 2.02 5.18 -3.73 -0.02 2.00 16 29 N -0.42 -6.48 9.23 -9.35 -0.09 -6.57 16 30 C 0.03 0.39 10.22 -17.38 -0.18 0.21 16 31 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 32 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.14 0.93 7.94 -52.49 -0.42 0.51 16 36 H 0.11 0.75 7.68 -51.93 -0.40 0.35 16 37 H 0.11 0.98 7.69 -51.93 -0.40 0.59 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.54 5.95 -51.93 -0.31 0.23 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.77 6.63 -51.93 -0.34 0.42 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 45 H 0.04 0.56 6.59 -51.93 -0.34 0.21 16 46 H 0.05 0.90 6.23 -51.93 -0.32 0.57 16 47 H 0.39 10.82 6.46 -40.82 -0.26 10.56 16 48 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.10 2.15 5.82 -51.93 -0.30 1.84 16 50 H 0.07 1.12 6.05 -51.93 -0.31 0.80 16 51 H 0.16 1.79 6.32 -52.49 -0.33 1.46 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -37.46 400.50 -8.71 -46.17 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.89 Total: 9.57 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.56 Total: -2.08 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.15 Total: -63.42 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.12 Total: -14.34 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.46 -8.71 -46.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482476366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.107 kcal (2) G-P(sol) polarization free energy of solvation -37.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds