Wall clock time and date at job start Wed Apr 1 2020 04:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35912 * 116.99932 * 2 1 4 4 C 1.39140 * 120.46999 * 179.97438 * 3 2 1 5 5 C 1.38539 * 118.37128 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.22020 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.55440 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46989 * 125.00082 * 7 6 5 9 9 O 1.21276 * 120.00166 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99585 * 179.97438 * 8 7 6 11 11 C 1.46957 * 120.65462 * 359.81587 * 10 8 7 12 12 C 1.53197 * 108.89063 * 233.53473 * 11 10 8 13 13 C 1.53040 * 109.31110 * 305.44560 * 12 11 10 14 14 C 1.53044 * 109.53662 * 61.36306 * 13 12 11 15 15 H 1.08997 * 109.49691 * 58.58900 * 14 13 12 16 16 C 1.53008 * 109.52383 * 178.66719 * 14 13 12 17 17 H 1.09003 * 109.46951 * 304.85474 * 16 14 13 18 18 C 1.52998 * 109.46793 * 64.85204 * 16 14 13 19 19 N 1.46490 * 109.46919 * 184.85490 * 16 14 13 20 20 C 1.36946 * 119.99823 * 154.99984 * 19 16 14 21 21 H 1.07994 * 119.99649 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99922 * 179.97438 * 20 19 16 23 23 N 1.31620 * 120.00222 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99745 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47200 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47120 * 120.00404 * 24 22 20 27 27 H 1.48500 * 109.47299 * 240.00350 * 24 22 20 28 28 C 1.46926 * 120.62730 * 180.02562 * 10 8 7 29 29 N 1.31849 * 120.88786 * 0.25624 * 6 5 4 30 30 C 1.31843 * 121.77740 * 359.47194 * 29 6 5 31 31 H 1.09000 * 109.47321 * 300.00348 * 1 2 3 32 32 H 1.09001 * 109.46736 * 60.00664 * 1 2 3 33 33 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 34 34 H 1.07993 * 120.81649 * 0.04649 * 4 3 2 35 35 H 1.07993 * 120.38795 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.46970 * 4.99870 * 7 6 5 37 37 H 1.08999 * 109.46766 * 245.00272 * 7 6 5 38 38 H 1.09001 * 109.46843 * 113.75468 * 11 10 8 39 39 H 1.08997 * 109.71602 * 353.46961 * 11 10 8 40 40 H 1.08995 * 109.50005 * 185.49506 * 12 11 10 41 41 H 1.08994 * 109.52103 * 65.41136 * 12 11 10 42 42 H 1.08994 * 109.45892 * 301.34445 * 13 12 11 43 43 H 1.09000 * 109.46209 * 181.38193 * 13 12 11 44 44 H 1.09007 * 109.46691 * 180.02562 * 18 16 14 45 45 H 1.08996 * 109.47523 * 299.99813 * 18 16 14 46 46 H 1.08994 * 109.47258 * 60.00707 * 18 16 14 47 47 H 0.96994 * 120.00742 * 334.99387 * 19 16 14 48 48 H 0.96998 * 119.99831 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.58861 * 6.60251 * 28 10 8 50 50 H 1.08996 * 109.58519 * 246.32142 * 28 10 8 51 51 H 1.08001 * 119.65110 * 180.27031 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0182 2.5518 0.0011 6 6 3.2079 3.6720 0.0016 7 6 3.8345 5.0427 0.0027 8 6 3.3025 5.8391 -1.1608 9 8 2.4946 5.3426 -1.9167 10 7 3.7246 7.1033 -1.3611 11 6 4.7001 7.7206 -0.4517 12 6 4.1330 9.0501 0.0558 13 6 3.7467 9.9246 -1.1392 14 6 2.6646 9.2199 -1.9606 15 1 1.7965 9.0279 -1.3300 16 6 2.2549 10.1091 -3.1365 17 1 1.9467 11.0858 -2.7633 18 6 3.4424 10.2775 -4.0864 19 7 1.1399 9.4865 -3.8541 20 6 0.2777 10.2607 -4.5839 21 1 0.4196 11.3303 -4.6299 22 6 -0.7786 9.6707 -5.2643 23 7 -0.9519 8.3672 -5.2077 24 14 -1.9551 10.7269 -6.2592 25 1 -1.5453 12.1509 -6.1613 26 1 -1.9224 10.2995 -7.6809 27 1 -3.3324 10.5700 -5.7266 28 6 3.2147 7.8926 -2.4907 29 7 1.8944 3.5573 0.0066 30 6 1.3002 2.3804 0.0010 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 4.0432 0.4030 0.0002 35 1 5.0932 2.6551 0.0011 36 1 4.9166 4.9475 -0.0865 37 1 3.5902 5.5530 0.9344 38 1 5.6321 7.9016 -0.9872 39 1 4.8869 7.0569 0.3925 40 1 4.8867 9.5628 0.6533 41 1 3.2512 8.8600 0.6677 42 1 4.6238 10.0942 -1.7636 43 1 3.3656 10.8810 -0.7812 44 1 3.1506 10.9113 -4.9239 45 1 4.2720 10.7407 -3.5524 46 1 3.7505 9.3008 -4.4595 47 1 1.0122 8.5259 -3.8125 48 1 -1.6902 7.9550 -5.6829 49 1 2.4190 7.3415 -2.9919 50 1 4.0236 8.0877 -3.1947 51 1 0.2216 2.3265 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482476366.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:04 Heat of formation + Delta-G solvation = -51.050603 kcal Electronic energy + Delta-G solvation = -30884.923485 eV Core-core repulsion = 26783.862984 eV Total energy + Delta-G solvation = -4101.060500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.81126 -41.08851 -39.44729 -38.75285 -36.87525 -34.68941 -33.46220 -33.38897 -33.08370 -31.44659 -29.74030 -28.92944 -28.13945 -26.35340 -26.05353 -24.62994 -24.34781 -23.23440 -22.27016 -20.63894 -19.71426 -19.22995 -19.12121 -18.33328 -17.82480 -17.28794 -16.83627 -16.71913 -16.50197 -16.28997 -15.73252 -15.49861 -15.34350 -15.17068 -15.09806 -15.04449 -14.55973 -14.31886 -13.97279 -13.91603 -13.88622 -13.85304 -13.34526 -13.15478 -13.02539 -12.90098 -12.85974 -12.78396 -12.63779 -12.34216 -12.25965 -12.04309 -11.85650 -11.78057 -11.69952 -11.35196 -11.15780 -10.95791 -10.77873 -10.62890 -10.32083 -9.49599 -9.36099 -9.01783 -7.93439 -5.23197 0.10242 0.31865 1.42667 1.44903 1.54818 1.75157 2.08210 2.21826 2.54689 2.79422 3.31717 3.39140 3.64145 3.65576 3.73363 3.83427 3.93145 3.96844 4.04014 4.17178 4.22964 4.29965 4.30661 4.36894 4.38936 4.44050 4.51177 4.56653 4.62831 4.64944 4.67512 4.72139 4.76272 4.88250 4.94597 4.95518 4.99168 5.09561 5.11780 5.14396 5.20467 5.26520 5.41593 5.48179 5.51926 5.54695 5.64063 5.71759 6.17975 6.27469 6.55861 7.06341 7.31875 7.34202 8.11325 8.32438 9.30277 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.002811 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.851399 B = 9958.522741 C =12458.816364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.065 3.935 4 C -0.115 4.115 5 C -0.114 4.114 6 C 0.080 3.920 7 C -0.074 4.074 8 C 0.502 3.498 9 O -0.584 6.584 10 N -0.612 5.612 11 C 0.099 3.901 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.091 4.091 15 H 0.037 0.963 16 C 0.170 3.830 17 H 0.045 0.955 18 C -0.156 4.156 19 N -0.742 5.742 20 C -0.234 4.234 21 H 0.079 0.921 22 C -0.085 4.085 23 N -0.974 5.974 24 Si 0.974 3.026 25 H -0.261 1.261 26 H -0.295 1.295 27 H -0.296 1.296 28 C 0.127 3.873 29 N -0.465 5.465 30 C 0.000 4.000 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.170 0.830 35 H 0.186 0.814 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.032 0.968 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.368 0.632 48 H 0.247 0.753 49 H 0.038 0.962 50 H 0.078 0.922 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.683 -10.520 18.888 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.018 3.982 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.059 4.059 7 C -0.113 4.113 8 C 0.291 3.709 9 O -0.463 6.463 10 N -0.345 5.345 11 C -0.022 4.022 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.111 4.111 15 H 0.056 0.944 16 C 0.062 3.938 17 H 0.064 0.936 18 C -0.215 4.215 19 N -0.382 5.382 20 C -0.366 4.366 21 H 0.097 0.903 22 C -0.276 4.276 23 N -0.626 5.626 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.222 1.222 27 H -0.223 1.223 28 C 0.004 3.996 29 N -0.175 5.175 30 C -0.158 4.158 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.187 0.813 35 H 0.203 0.797 36 H 0.174 0.826 37 H 0.147 0.853 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.200 0.800 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.096 0.904 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 17.755 -10.064 18.444 27.508 hybrid contribution -1.693 -0.620 -1.222 2.178 sum 16.062 -10.684 17.222 25.860 Atomic orbital electron populations 1.23366 0.76477 1.05984 1.01993 1.86031 1.23302 1.25598 1.88508 1.20272 0.94210 0.85579 0.98185 1.21295 0.91211 1.00065 1.01496 1.22201 1.02988 0.90428 0.97734 1.21001 0.88973 0.96217 0.99757 1.20696 1.03073 0.90084 0.97486 1.21240 0.80818 0.82051 0.86741 1.90769 1.35372 1.70869 1.49259 1.48305 1.44476 1.12560 1.29166 1.22182 0.90975 0.95311 0.93741 1.21933 1.02011 0.95584 0.97284 1.21598 0.97669 0.98526 0.96806 1.21582 0.98267 0.94717 0.96531 0.94408 1.20505 0.87557 0.94834 0.90904 0.93647 1.22383 0.98717 1.00628 0.99799 1.42810 1.30682 1.06536 1.58220 1.19709 1.04545 0.91516 1.20796 0.90308 1.25647 1.01671 0.96884 1.03441 1.69900 1.33422 1.10423 1.48835 0.85049 0.78398 0.78509 0.77701 1.18517 1.22215 1.22337 1.21400 0.98368 0.91328 0.88502 1.67249 1.13490 1.27563 1.09155 1.23003 1.01066 0.87405 1.04309 0.91582 0.92835 0.85345 0.81278 0.79688 0.82643 0.85285 0.88921 0.86459 0.86925 0.92917 0.89671 0.91154 0.94848 0.89859 0.93935 0.80025 0.94375 0.94382 0.90387 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.36 16 2 O -0.32 -6.85 10.51 -92.55 -0.97 -7.82 16 3 C 0.07 1.56 6.71 22.60 0.15 1.72 16 4 C -0.11 -2.20 10.13 22.56 0.23 -1.97 16 5 C -0.11 -2.03 9.70 22.35 0.22 -1.81 16 6 C 0.08 2.00 5.76 42.56 0.25 2.25 16 7 C -0.07 -1.42 4.45 29.10 0.13 -1.29 16 8 C 0.50 15.95 7.63 87.66 0.67 16.62 16 9 O -0.58 -26.72 14.76 -3.02 -0.04 -26.76 16 10 N -0.61 -16.74 2.98 -818.91 -2.44 -19.18 16 11 C 0.10 1.43 6.33 86.36 0.55 1.98 16 12 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16 13 C -0.11 -2.34 4.89 30.62 0.15 -2.19 16 14 C -0.09 -3.08 2.27 -10.73 -0.02 -3.10 16 15 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 16 C 0.17 6.91 2.67 45.00 0.12 7.03 16 17 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 18 C -0.16 -5.43 8.77 71.98 0.63 -4.79 16 19 N -0.74 -40.34 5.06 -322.94 -1.63 -41.97 16 20 C -0.23 -13.73 9.93 84.03 0.83 -12.90 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 22 C -0.08 -5.22 5.50 84.86 0.47 -4.75 16 23 N -0.97 -65.10 13.06 21.65 0.28 -64.82 16 24 Si 0.97 48.95 29.55 68.60 2.03 50.98 16 25 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 27 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 28 C 0.13 4.51 5.18 86.35 0.45 4.96 16 29 N -0.46 -15.25 9.23 -183.49 -1.69 -16.94 16 30 C 0.00 0.01 10.22 84.80 0.87 0.87 16 31 H 0.07 0.88 7.68 -2.39 -0.02 0.86 16 32 H 0.05 0.88 7.68 -2.39 -0.02 0.86 16 33 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.19 1.48 7.94 -2.91 -0.02 1.46 16 36 H 0.16 1.35 7.68 -2.39 -0.02 1.33 16 37 H 0.13 1.93 7.69 -2.39 -0.02 1.91 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.12 0.87 5.95 -2.39 -0.01 0.86 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.56 6.63 -2.39 -0.02 1.55 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.08 2.14 6.59 -2.39 -0.02 2.13 16 46 H 0.04 1.53 6.23 -2.39 -0.01 1.51 16 47 H 0.37 22.38 6.46 -92.71 -0.60 21.78 16 48 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 49 H 0.04 1.82 5.82 -2.39 -0.01 1.81 16 50 H 0.08 2.56 6.05 -2.39 -0.01 2.54 16 51 H 0.16 4.07 6.32 -2.91 -0.02 4.05 16 Total: -1.00 -92.37 400.50 2.85 -89.52 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.35 Total: 34.85 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 6.98 Total: 2.14 kcal Atomic # 7 Polarization: -137.43 SS G_CDS: -5.48 Total: -142.91 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.02 Total: -34.58 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -92.37 2.85 -89.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482476366.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.471 kcal (2) G-P(sol) polarization free energy of solvation -92.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds