Wall clock time and date at job start Wed Apr 1 2020 05:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46736 * 240.00462 * 2 1 3 5 5 N 1.46902 * 109.46590 * 184.99881 * 4 2 1 6 6 C 1.46898 * 111.00283 * 293.95038 * 5 4 2 7 7 C 1.46906 * 110.99573 * 169.99897 * 5 4 2 8 8 C 1.50706 * 109.46929 * 190.00042 * 7 5 4 9 9 O 1.21290 * 119.99857 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99491 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00225 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99807 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46632 * 60.00094 * 15 13 11 17 17 H 1.48496 * 109.46884 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47312 * 300.00041 * 15 13 11 19 19 N 1.46499 * 109.46968 * 120.00396 * 2 1 3 20 20 C 1.34770 * 120.00144 * 274.99576 * 19 2 1 21 21 O 1.21286 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00224 * 180.02562 * 20 19 2 23 23 C 1.53004 * 109.47209 * 180.02562 * 22 20 19 24 24 C 1.50694 * 109.47209 * 179.97438 * 23 22 20 25 25 C 1.38227 * 120.00514 * 269.72794 * 24 23 22 26 26 C 1.38232 * 120.00520 * 179.76276 * 25 24 23 27 27 C 1.38241 * 119.99726 * 0.51217 * 26 25 24 28 28 C 1.38233 * 119.99619 * 359.73861 * 27 26 25 29 29 C 1.38230 * 120.00476 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.46857 * 59.99664 * 1 2 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46587 * 299.99622 * 1 2 3 33 33 H 1.08993 * 109.47005 * 65.00188 * 4 2 1 34 34 H 1.09000 * 109.47130 * 304.99423 * 4 2 1 35 35 H 1.08997 * 109.47334 * 296.05250 * 6 5 4 36 36 H 1.09000 * 109.46674 * 56.05127 * 6 5 4 37 37 H 1.08995 * 109.47296 * 176.04950 * 6 5 4 38 38 H 1.08998 * 109.47121 * 309.99709 * 7 5 4 39 39 H 1.09000 * 109.47141 * 69.99907 * 7 5 4 40 40 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 41 41 H 0.96994 * 120.00109 * 179.97438 * 14 13 11 42 42 H 0.96997 * 119.99986 * 95.00047 * 19 2 1 43 43 H 1.08997 * 109.47165 * 300.00173 * 22 20 19 44 44 H 1.08996 * 109.47166 * 60.00410 * 22 20 19 45 45 H 1.09007 * 109.47084 * 300.00141 * 23 22 20 46 46 H 1.09003 * 109.47173 * 60.00131 * 23 22 20 47 47 H 1.07999 * 119.99742 * 0.02562 * 25 24 23 48 48 H 1.07998 * 120.00702 * 180.22728 * 26 25 24 49 49 H 1.07995 * 120.00138 * 179.72361 * 27 26 25 50 50 H 1.08007 * 119.99464 * 179.97438 * 28 27 26 51 51 H 1.07995 * 120.00590 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.1311 0.4994 -1.2721 7 6 4.0107 -1.7143 -2.2457 8 6 5.4725 -1.9937 -2.0081 9 8 6.0367 -1.5013 -1.0540 10 7 6.1526 -2.7905 -2.8558 11 6 7.4825 -3.0443 -2.6400 12 1 7.9849 -2.6059 -1.7904 13 6 8.1839 -3.8655 -3.5143 14 7 7.5727 -4.3985 -4.5483 15 14 9.9962 -4.2107 -3.2206 16 1 10.1674 -4.8648 -1.8985 17 1 10.5081 -5.1087 -4.2867 18 1 10.7533 -2.9334 -3.2427 19 7 2.0184 -0.6907 1.1961 20 6 2.1472 -0.0185 2.3571 21 8 1.8584 1.1582 2.4118 22 6 2.6500 -0.7288 3.5874 23 6 2.7008 0.2541 4.7589 24 6 3.2031 -0.4564 5.9893 25 6 2.3087 -1.0670 6.8483 26 6 2.7698 -1.7229 7.9744 27 6 4.1246 -1.7591 8.2470 28 6 5.0185 -1.1441 7.3906 29 6 4.5578 -0.4923 6.2620 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2953 35 1 3.9101 0.9468 -2.2411 36 1 3.7381 1.1364 -0.4797 37 1 5.2101 0.3988 -1.1559 38 1 3.4545 -2.6515 -2.2301 39 1 3.8857 -1.2336 -3.2160 40 1 5.7015 -3.1840 -3.6191 41 1 8.0624 -4.9715 -5.1588 42 1 2.2490 -1.6318 1.1525 43 1 1.9778 -1.5511 3.8324 44 1 3.6493 -1.1206 3.3978 45 1 3.3729 1.0767 4.5141 46 1 1.7013 0.6455 4.9484 47 1 1.2500 -1.0352 6.6375 48 1 2.0714 -2.2031 8.6437 49 1 4.4845 -2.2677 9.1291 50 1 6.0770 -1.1720 7.6039 51 1 5.2562 -0.0114 5.5932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483407068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:35 Heat of formation + Delta-G solvation = -54.123718 kcal Electronic energy + Delta-G solvation = -29816.159982 eV Core-core repulsion = 25714.966221 eV Total energy + Delta-G solvation = -4101.193761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.01818 -39.30875 -38.58633 -37.01444 -34.74684 -34.08058 -33.77453 -31.35941 -31.22483 -31.05877 -29.48750 -28.01036 -26.91405 -25.08110 -24.69635 -22.74378 -22.67642 -21.36727 -20.51172 -20.17384 -19.16306 -17.85649 -17.35925 -16.72546 -16.29765 -16.04495 -15.81211 -15.28654 -15.20338 -14.87555 -14.75434 -14.64441 -14.04338 -13.99069 -13.65041 -13.58000 -13.44917 -13.26120 -13.12907 -12.93963 -12.75059 -12.38445 -12.13721 -12.02300 -11.98768 -11.78562 -11.52026 -11.42358 -11.37128 -11.24181 -11.16024 -10.95929 -10.92193 -10.70614 -10.45479 -10.22837 -9.77904 -9.48278 -9.09711 -8.95670 -8.86012 -8.47690 -7.99741 -7.87765 -6.43169 -3.84004 1.16663 1.22596 2.75453 3.18711 3.24421 3.24676 3.28843 3.63151 3.88810 3.94414 4.22684 4.55620 4.66799 4.75069 4.82401 4.90031 4.96241 5.00502 5.04114 5.11682 5.18388 5.21240 5.26137 5.35795 5.37176 5.42678 5.50386 5.51306 5.61924 5.70245 5.72463 5.73494 5.81987 5.91725 5.92411 5.95929 5.98126 6.04247 6.08440 6.26292 6.28957 6.34262 6.48824 6.56246 6.60846 6.83508 7.22820 7.34153 7.53556 7.64585 8.04756 8.34672 8.60426 9.16778 9.53046 10.05004 10.74502 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008163 B = 0.002389 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.137656 B =11718.606433 C =14556.643879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.087 0.913 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.444 3.556 9 O -0.577 6.577 10 N -0.565 5.565 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.706 5.706 20 C 0.517 3.483 21 O -0.553 6.553 22 C -0.135 4.135 23 C -0.064 4.064 24 C -0.080 4.080 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.118 4.118 29 C -0.114 4.114 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.014 0.986 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.405 0.595 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 4.634 15.613 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.105 0.895 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.229 3.771 9 O -0.461 6.461 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.356 5.356 20 C 0.304 3.696 21 O -0.432 6.432 22 C -0.175 4.175 23 C -0.101 4.101 24 C -0.080 4.080 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.145 4.145 28 C -0.136 4.136 29 C -0.132 4.132 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.240 0.760 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.181 5.469 16.568 22.484 hybrid contribution 0.560 -0.737 -1.341 1.629 sum -13.622 4.732 15.227 20.972 Atomic orbital electron populations 1.22148 0.95238 1.02118 1.02479 1.20926 0.93170 0.97663 0.84122 0.89522 1.22499 0.89283 1.00838 0.96086 1.61579 1.03093 1.12232 1.46886 1.22569 1.03127 0.88538 0.98465 1.21890 0.96385 0.97526 0.92839 1.19720 0.87671 0.84164 0.85514 1.90485 1.69984 1.54247 1.31366 1.41864 1.10378 1.42843 1.25042 1.19636 0.84951 1.27182 1.11051 0.88002 1.25253 1.00470 0.96709 0.95492 1.69600 1.37502 1.32916 1.14361 0.85929 0.82029 0.78398 0.77942 1.19880 1.20990 1.19932 1.45821 1.66509 1.14410 1.08888 1.20587 0.77092 0.87222 0.84735 1.90672 1.50950 1.16130 1.85423 1.21639 1.03826 0.99440 0.92629 1.20322 1.02729 0.96903 0.90184 1.19953 0.93559 0.98151 0.96374 1.21064 0.99467 0.98241 0.94826 1.21133 0.95708 0.99541 0.97500 1.21148 0.93534 1.00124 0.99720 1.21183 0.99745 0.97809 0.94859 1.21159 0.95167 0.99481 0.97425 0.91773 0.92388 0.91945 0.93640 0.90311 0.96736 0.92146 0.88556 0.89476 0.93500 0.77531 0.91832 0.76003 0.89061 0.88328 0.90116 0.90381 0.86153 0.86250 0.86304 0.86062 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.16 16 2 C 0.15 1.68 2.36 -67.92 -0.16 1.52 16 3 H 0.09 1.18 6.15 -51.93 -0.32 0.86 16 4 C 0.04 0.48 4.52 -3.82 -0.02 0.47 16 5 N -0.51 -7.95 4.22 -244.37 -1.03 -8.98 16 6 C 0.02 0.34 9.01 60.06 0.54 0.88 16 7 C 0.04 0.76 5.45 -4.97 -0.03 0.73 16 8 C 0.44 10.12 7.51 -10.99 -0.08 10.04 16 9 O -0.58 -15.04 13.88 5.55 0.08 -14.96 16 10 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 11 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 12 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 15 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 N -0.71 -8.20 4.80 -53.80 -0.26 -8.46 16 20 C 0.52 6.57 7.79 -10.99 -0.09 6.49 16 21 O -0.55 -8.78 15.65 5.55 0.09 -8.69 16 22 C -0.14 -1.38 5.68 -27.88 -0.16 -1.54 16 23 C -0.06 -0.66 4.63 -27.88 -0.13 -0.79 16 24 C -0.08 -0.81 5.13 -104.63 -0.54 -1.34 16 25 C -0.12 -1.08 9.70 -39.59 -0.38 -1.46 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 29 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 37 H 0.10 1.93 5.88 -51.93 -0.31 1.62 16 38 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.41 4.33 8.60 -40.82 -0.35 3.98 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 46 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 421.79 15.07 6.36 6.36 Total: -1.00 -32.42 421.79 -9.93 -42.34 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -8.29 Total: 14.11 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.51 Total: 0.02 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.62 Total: -55.02 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.16 Total: -23.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.42 -9.93 -42.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483407068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.779 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds