Wall clock time and date at job start Wed Apr 1 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46736 * 240.00462 * 2 1 3 5 5 N 1.46902 * 109.46590 * 184.99881 * 4 2 1 6 6 C 1.46898 * 111.00283 * 293.95038 * 5 4 2 7 7 C 1.46906 * 110.99573 * 169.99897 * 5 4 2 8 8 C 1.50706 * 109.46929 * 190.00042 * 7 5 4 9 9 O 1.21290 * 119.99857 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99491 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00225 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99807 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46632 * 60.00094 * 15 13 11 17 17 H 1.48496 * 109.46884 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47312 * 300.00041 * 15 13 11 19 19 N 1.46499 * 109.46968 * 120.00396 * 2 1 3 20 20 C 1.34770 * 120.00144 * 274.99576 * 19 2 1 21 21 O 1.21286 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00224 * 180.02562 * 20 19 2 23 23 C 1.53004 * 109.47209 * 180.02562 * 22 20 19 24 24 C 1.50694 * 109.47209 * 179.97438 * 23 22 20 25 25 C 1.38227 * 120.00514 * 269.72794 * 24 23 22 26 26 C 1.38232 * 120.00520 * 179.76276 * 25 24 23 27 27 C 1.38241 * 119.99726 * 0.51217 * 26 25 24 28 28 C 1.38233 * 119.99619 * 359.73861 * 27 26 25 29 29 C 1.38230 * 120.00476 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.46857 * 59.99664 * 1 2 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46587 * 299.99622 * 1 2 3 33 33 H 1.08993 * 109.47005 * 65.00188 * 4 2 1 34 34 H 1.09000 * 109.47130 * 304.99423 * 4 2 1 35 35 H 1.08997 * 109.47334 * 296.05250 * 6 5 4 36 36 H 1.09000 * 109.46674 * 56.05127 * 6 5 4 37 37 H 1.08995 * 109.47296 * 176.04950 * 6 5 4 38 38 H 1.08998 * 109.47121 * 309.99709 * 7 5 4 39 39 H 1.09000 * 109.47141 * 69.99907 * 7 5 4 40 40 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 41 41 H 0.96994 * 120.00109 * 179.97438 * 14 13 11 42 42 H 0.96997 * 119.99986 * 95.00047 * 19 2 1 43 43 H 1.08997 * 109.47165 * 300.00173 * 22 20 19 44 44 H 1.08996 * 109.47166 * 60.00410 * 22 20 19 45 45 H 1.09007 * 109.47084 * 300.00141 * 23 22 20 46 46 H 1.09003 * 109.47173 * 60.00131 * 23 22 20 47 47 H 1.07999 * 119.99742 * 0.02562 * 25 24 23 48 48 H 1.07998 * 120.00702 * 180.22728 * 26 25 24 49 49 H 1.07995 * 120.00138 * 179.72361 * 27 26 25 50 50 H 1.08007 * 119.99464 * 179.97438 * 28 27 26 51 51 H 1.07995 * 120.00590 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.1311 0.4994 -1.2721 7 6 4.0107 -1.7143 -2.2457 8 6 5.4725 -1.9937 -2.0081 9 8 6.0367 -1.5013 -1.0540 10 7 6.1526 -2.7905 -2.8558 11 6 7.4825 -3.0443 -2.6400 12 1 7.9849 -2.6059 -1.7904 13 6 8.1839 -3.8655 -3.5143 14 7 7.5727 -4.3985 -4.5483 15 14 9.9962 -4.2107 -3.2206 16 1 10.1674 -4.8648 -1.8985 17 1 10.5081 -5.1087 -4.2867 18 1 10.7533 -2.9334 -3.2427 19 7 2.0184 -0.6907 1.1961 20 6 2.1472 -0.0185 2.3571 21 8 1.8584 1.1582 2.4118 22 6 2.6500 -0.7288 3.5874 23 6 2.7008 0.2541 4.7589 24 6 3.2031 -0.4564 5.9893 25 6 2.3087 -1.0670 6.8483 26 6 2.7698 -1.7229 7.9744 27 6 4.1246 -1.7591 8.2470 28 6 5.0185 -1.1441 7.3906 29 6 4.5578 -0.4923 6.2620 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2953 35 1 3.9101 0.9468 -2.2411 36 1 3.7381 1.1364 -0.4797 37 1 5.2101 0.3988 -1.1559 38 1 3.4545 -2.6515 -2.2301 39 1 3.8857 -1.2336 -3.2160 40 1 5.7015 -3.1840 -3.6191 41 1 8.0624 -4.9715 -5.1588 42 1 2.2490 -1.6318 1.1525 43 1 1.9778 -1.5511 3.8324 44 1 3.6493 -1.1206 3.3978 45 1 3.3729 1.0767 4.5141 46 1 1.7013 0.6455 4.9484 47 1 1.2500 -1.0352 6.6375 48 1 2.0714 -2.2031 8.6437 49 1 4.4845 -2.2677 9.1291 50 1 6.0770 -1.1720 7.6039 51 1 5.2562 -0.0114 5.5932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483407068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:34 Heat of formation + Delta-G solvation = -75.356979 kcal Electronic energy + Delta-G solvation = -29817.080725 eV Core-core repulsion = 25714.966221 eV Total energy + Delta-G solvation = -4102.114504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.00728 -40.32707 -39.96656 -38.32061 -36.11451 -35.50379 -34.92318 -33.25036 -32.25701 -31.74324 -30.28156 -29.47673 -27.99961 -26.65965 -25.77989 -23.91553 -23.43340 -22.22080 -21.42339 -21.14712 -20.93989 -19.82749 -18.30512 -17.80632 -17.38696 -17.17477 -16.77911 -16.54650 -16.50654 -16.16527 -15.91826 -15.74519 -15.57330 -15.13462 -15.10756 -14.77876 -14.30435 -14.21530 -14.00647 -13.94374 -13.67529 -13.56072 -13.46432 -13.22353 -13.11440 -12.88449 -12.82485 -12.69199 -12.64879 -12.44359 -12.38454 -12.19413 -12.12484 -11.88099 -11.72226 -11.69076 -11.43500 -10.81840 -10.25517 -9.97404 -9.92799 -9.79748 -9.58593 -9.20345 -8.44617 -5.92585 0.45539 0.52433 1.40043 1.41940 1.52279 1.74975 2.09684 2.28494 2.34360 2.76874 2.91851 3.22668 3.44796 3.72873 3.81693 3.94063 4.07823 4.15347 4.18649 4.22737 4.26242 4.29820 4.34487 4.38839 4.44666 4.54256 4.56657 4.59403 4.64717 4.66603 4.70201 4.72048 4.80285 4.83937 4.96913 5.07024 5.09054 5.18403 5.21023 5.23052 5.30888 5.42794 5.60491 5.64833 5.65528 5.75484 5.88771 6.06803 6.15302 6.19783 6.63881 6.69142 7.16101 7.37571 7.60521 8.16928 8.72516 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008163 B = 0.002389 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.137656 B =11718.606433 C =14556.643879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.062 0.938 4 C 0.047 3.953 5 N -0.527 5.527 6 C 0.031 3.969 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.614 6.614 10 N -0.576 5.576 11 C -0.330 4.330 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.274 1.274 19 N -0.701 5.701 20 C 0.512 3.488 21 O -0.590 6.590 22 C -0.127 4.127 23 C -0.056 4.056 24 C -0.091 4.091 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.129 4.129 29 C -0.134 4.134 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.029 0.971 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.411 0.589 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.140 0.860 50 H 0.133 0.867 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 3.239 15.705 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.080 0.920 4 C -0.081 4.081 5 N -0.251 5.251 6 C -0.118 4.118 7 C -0.073 4.073 8 C 0.229 3.771 9 O -0.500 6.500 10 N -0.214 5.214 11 C -0.459 4.459 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.562 5.562 15 Si 0.813 3.187 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.199 1.199 19 N -0.351 5.351 20 C 0.300 3.700 21 O -0.471 6.471 22 C -0.167 4.167 23 C -0.094 4.094 24 C -0.091 4.091 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.150 4.150 28 C -0.147 4.147 29 C -0.152 4.152 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.247 0.753 43 H 0.133 0.867 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.158 0.842 50 H 0.151 0.849 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.767 4.054 16.638 23.278 hybrid contribution 1.004 -0.259 -1.322 1.680 sum -14.763 3.795 15.316 21.609 Atomic orbital electron populations 1.22054 0.93228 1.03217 1.02489 1.20952 0.94619 0.96311 0.84026 0.92007 1.22579 0.86328 1.02575 0.96597 1.61496 1.05540 1.11398 1.46712 1.22345 1.00575 0.89477 0.99353 1.21771 0.92105 0.99426 0.94015 1.20821 0.89987 0.82200 0.84069 1.90474 1.71610 1.55100 1.32796 1.41932 1.09838 1.43799 1.25788 1.19576 0.86606 1.28563 1.11192 0.90481 1.25977 1.04197 0.96043 0.95031 1.69657 1.38848 1.33012 1.14664 0.85047 0.77288 0.78260 0.78113 1.19703 1.19563 1.19938 1.45857 1.65896 1.14644 1.08751 1.20992 0.76534 0.86852 0.85595 1.90653 1.52699 1.17711 1.86032 1.21610 1.03889 0.99729 0.91474 1.20202 1.02125 0.96448 0.90623 1.19959 0.93763 0.98839 0.96564 1.21295 1.00128 0.97975 0.94824 1.21469 0.96186 0.99037 0.97486 1.21476 0.93658 0.99725 1.00163 1.21418 1.00750 0.97811 0.94744 1.21279 0.95438 1.00361 0.98146 0.90239 0.90671 0.93489 0.91901 0.87865 0.95301 0.91909 0.92722 0.86517 0.91598 0.77042 0.91387 0.75280 0.86687 0.88808 0.92038 0.90475 0.84630 0.83883 0.84182 0.84885 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.15 3.11 2.36 45.00 0.11 3.22 16 3 H 0.06 1.65 6.15 -2.39 -0.01 1.64 16 4 C 0.05 0.94 4.52 86.30 0.39 1.33 16 5 N -0.53 -15.48 4.22 -927.04 -3.92 -19.39 16 6 C 0.03 1.00 9.01 127.69 1.15 2.15 16 7 C 0.06 1.84 5.45 85.56 0.47 2.30 16 8 C 0.44 20.20 7.51 87.66 0.66 20.86 16 9 O -0.61 -32.91 13.88 -3.06 -0.04 -32.95 16 10 N -0.58 -28.77 5.29 -306.99 -1.62 -30.39 16 11 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 14 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 15 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 N -0.70 -15.62 4.80 -442.52 -2.12 -17.75 16 20 C 0.51 13.08 7.79 87.66 0.68 13.76 16 21 O -0.59 -19.22 15.65 -3.05 -0.05 -19.27 16 22 C -0.13 -2.59 5.68 29.85 0.17 -2.42 16 23 C -0.06 -1.19 4.63 29.85 0.14 -1.06 16 24 C -0.09 -1.84 5.13 -19.87 -0.10 -1.94 16 25 C -0.12 -2.12 9.70 22.27 0.22 -1.91 16 26 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 28 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 29 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.99 6.40 -2.39 -0.02 1.97 16 37 H 0.05 2.26 5.88 -2.39 -0.01 2.24 16 38 H 0.12 3.07 7.93 -2.39 -0.02 3.05 16 39 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 40 H 0.40 18.73 7.90 -92.70 -0.73 18.00 16 41 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.41 8.14 8.60 -92.71 -0.80 7.35 16 43 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 1.51 8.04 -2.38 -0.02 1.49 16 46 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 47 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 48 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 49 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 50 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 51 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -72.11 421.79 0.69 -71.42 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.59 Total: 44.06 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.73 Total: 8.38 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -7.38 Total: -116.34 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.09 Total: -52.22 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.11 0.69 -71.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483407068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.937 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds