Wall clock time and date at job start Wed Apr 1 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 O 1.42899 * 109.47038 * 120.00120 * 2 1 3 5 5 C 1.35680 * 117.00107 * 149.99833 * 4 2 1 6 6 C 1.38901 * 119.62422 * 179.97438 * 5 4 2 7 7 C 1.39571 * 118.94423 * 179.97438 * 6 5 4 8 8 C 1.48161 * 120.88877 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00014 * 352.41161 * 8 7 6 10 10 N 1.34772 * 120.00279 * 172.41080 * 8 7 6 11 11 C 1.47027 * 125.64706 * 5.09019 * 10 8 7 12 12 C 1.54317 * 107.27292 * 181.02601 * 11 10 8 13 13 C 1.55158 * 102.94604 * 22.18944 * 12 11 10 14 14 H 1.08999 * 111.03396 * 82.58636 * 13 12 11 15 15 C 1.53000 * 111.00586 * 206.42910 * 13 12 11 16 16 H 1.08996 * 109.47250 * 47.54032 * 15 13 12 17 17 C 1.52997 * 109.47012 * 167.53843 * 15 13 12 18 18 N 1.46499 * 109.46805 * 287.53476 * 15 13 12 19 19 C 1.36941 * 119.99832 * 155.27274 * 18 15 13 20 20 H 1.08002 * 119.99818 * 359.73413 * 19 18 15 21 21 C 1.38806 * 120.00331 * 179.72748 * 19 18 15 22 22 N 1.31624 * 120.00379 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99887 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47008 * 90.00131 * 23 21 19 25 25 H 1.48498 * 109.47293 * 210.00206 * 23 21 19 26 26 H 1.48504 * 109.47133 * 330.00357 * 23 21 19 27 27 C 1.47424 * 125.65212 * 185.04392 * 10 8 7 28 28 C 1.39965 * 118.22058 * 0.27968 * 7 6 5 29 29 C 1.37982 * 119.13054 * 359.43486 * 28 7 6 30 30 N 1.31903 * 120.97585 * 0.57418 * 29 28 7 31 31 H 1.09010 * 109.46789 * 300.00376 * 1 2 3 32 32 H 1.08996 * 109.47008 * 59.99856 * 1 2 3 33 33 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46773 * 239.99804 * 2 1 3 35 35 H 1.09008 * 109.46971 * 299.99836 * 3 2 1 36 36 H 1.08996 * 109.47472 * 60.00232 * 3 2 1 37 37 H 1.08999 * 109.46723 * 180.02562 * 3 2 1 38 38 H 1.07992 * 120.52445 * 359.97438 * 6 5 4 39 39 H 1.09006 * 109.87978 * 300.43805 * 11 10 8 40 40 H 1.09000 * 109.88274 * 61.60035 * 11 10 8 41 41 H 1.09006 * 110.71749 * 263.82700 * 12 11 10 42 42 H 1.08997 * 110.72623 * 140.55823 * 12 11 10 43 43 H 1.09003 * 109.47046 * 184.90311 * 17 15 13 44 44 H 1.08996 * 109.47596 * 304.90229 * 17 15 13 45 45 H 1.09007 * 109.47100 * 64.90383 * 17 15 13 46 46 H 0.96997 * 120.00396 * 335.00576 * 18 15 13 47 47 H 0.96996 * 119.99904 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.36468 * 37.07556 * 27 10 8 49 49 H 1.08997 * 110.46186 * 274.79379 * 27 10 8 50 50 H 1.07996 * 120.43457 * 179.72302 * 28 7 6 51 51 H 1.08001 * 119.51053 * 180.31926 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.1987 -1.3131 1.0653 6 6 3.7134 -1.9851 2.1665 7 6 4.9408 -2.6385 2.0462 8 6 5.5295 -3.3688 3.1931 9 8 5.0153 -3.2911 4.2914 10 7 6.6351 -4.1194 3.0183 11 6 7.4165 -4.2178 1.7767 12 6 8.5708 -5.2077 2.0391 13 6 8.0466 -6.0436 3.2365 14 1 7.3858 -6.8413 2.8972 15 6 9.2055 -6.6085 4.0602 16 1 9.9295 -5.8182 4.2585 17 6 8.6706 -7.1544 5.3856 18 7 9.8543 -7.6890 3.3134 19 6 11.1623 -8.0063 3.5657 20 1 11.7169 -7.4571 4.3122 21 6 11.7755 -9.0338 2.8621 22 7 13.0326 -9.3391 3.1050 23 14 10.8165 -9.9833 1.5705 24 1 10.9733 -9.3205 0.2509 25 1 11.3346 -11.3727 1.4912 26 1 9.3791 -10.0115 1.9425 27 6 7.2620 -4.9769 4.0405 28 6 5.6034 -2.5807 0.8146 29 6 5.0190 -1.8959 -0.2310 30 7 3.8570 -1.2901 -0.0807 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 -0.8901 36 1 1.6768 1.9563 0.8900 37 1 3.1300 1.4424 -0.0005 38 1 3.1724 -2.0017 3.1010 39 1 6.7850 -4.5902 0.9699 40 1 7.8193 -3.2397 1.5136 41 1 9.4819 -4.6744 2.3106 42 1 8.7393 -5.8430 1.1696 43 1 9.5047 -7.4771 6.0087 44 1 8.1127 -6.3731 5.9017 45 1 8.0134 -8.0019 5.1908 46 1 9.3563 -8.1822 2.6429 47 1 13.4611 -10.0569 2.6130 48 1 6.4988 -5.4520 4.6569 49 1 7.9420 -4.3942 4.6619 50 1 6.5573 -3.0697 0.6831 51 1 5.5224 -1.8518 -1.1855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484351795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:16 Heat of formation + Delta-G solvation = -2.399015 kcal Electronic energy + Delta-G solvation = -30245.181836 eV Core-core repulsion = 26146.231027 eV Total energy + Delta-G solvation = -4098.950809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.32698 -40.18721 -38.53249 -37.89209 -35.57701 -33.72531 -33.22490 -32.32639 -30.85421 -30.65177 -29.70619 -27.80570 -27.64859 -25.85840 -24.18487 -23.82288 -22.95397 -21.75697 -21.44061 -20.20965 -19.90480 -18.75060 -17.65492 -17.47293 -16.59045 -16.38789 -16.03217 -15.83919 -15.68825 -15.02027 -14.80723 -14.50700 -14.37136 -14.14636 -13.89313 -13.67632 -13.55798 -13.24906 -12.94187 -12.93063 -12.75486 -12.73292 -12.54710 -12.39824 -12.34367 -12.22977 -11.83212 -11.47602 -11.32432 -11.20801 -11.02974 -10.92245 -10.66876 -10.55930 -10.44701 -10.28697 -10.24809 -9.98829 -9.82786 -9.62811 -8.98576 -8.93149 -8.79802 -7.32814 -5.81151 -3.17129 0.37707 0.78736 2.41830 2.62038 2.85516 3.32499 3.34907 3.41604 3.48263 3.86029 4.04227 4.43616 4.44937 4.50684 4.54381 4.54988 4.60900 4.69660 4.80888 4.83647 4.85228 5.06208 5.11993 5.18684 5.26033 5.31852 5.34033 5.37444 5.40395 5.43539 5.49443 5.57702 5.67865 5.69245 5.70246 5.75395 5.76466 5.84394 5.93890 6.03777 6.07159 6.12940 6.29066 6.33112 6.42388 6.74003 6.89468 6.95729 7.24424 7.42534 7.85511 7.94634 8.37628 9.15811 9.88164 10.07556 11.37109 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.001958 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.058858 B =14296.280775 C =14956.544398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.300 6.300 5 C 0.321 3.679 6 C -0.136 4.136 7 C -0.046 4.046 8 C 0.571 3.429 9 O -0.529 6.529 10 N -0.605 5.605 11 C 0.085 3.915 12 C -0.123 4.123 13 C -0.107 4.107 14 H 0.082 0.918 15 C 0.191 3.809 16 H 0.060 0.940 17 C -0.170 4.170 18 N -0.746 5.746 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.115 3.885 28 C -0.216 4.216 29 C 0.137 3.863 30 N -0.529 5.529 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.153 0.847 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.173 0.827 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.511 19.304 -8.677 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.142 3.858 6 C -0.157 4.157 7 C -0.057 4.057 8 C 0.359 3.641 9 O -0.406 6.406 10 N -0.338 5.338 11 C -0.037 4.037 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.100 0.900 15 C 0.081 3.919 16 H 0.078 0.922 17 C -0.230 4.230 18 N -0.389 5.389 19 C -0.372 4.372 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.007 4.007 28 C -0.235 4.235 29 C -0.018 4.018 30 N -0.253 5.253 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.170 0.830 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.190 0.810 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -22.160 19.862 -8.452 30.935 hybrid contribution -0.163 -1.209 -0.531 1.331 sum -22.323 18.653 -8.983 30.445 Atomic orbital electron populations 1.21917 0.92771 1.03105 1.03058 1.22372 0.94522 0.92757 0.87866 1.22219 1.02149 0.95582 1.02667 1.86319 1.31349 1.64310 1.38755 1.19603 0.86396 0.90442 0.89377 1.21108 0.96141 0.99048 0.99434 1.20042 0.94423 0.96994 0.94207 1.17731 0.79549 0.79074 0.87700 1.90798 1.61314 1.62973 1.25533 1.48381 1.25979 1.44857 1.14631 1.22688 0.93681 1.00282 0.87068 1.22725 0.96871 0.96829 0.99642 1.22720 0.97847 0.96402 0.95689 0.89959 1.20103 0.91009 0.90979 0.89808 0.92247 1.22499 1.00986 1.00219 0.99292 1.42749 1.11406 1.39200 1.45526 1.19047 0.85849 1.13997 1.18270 0.89195 1.24665 0.95832 0.98894 0.99702 1.69698 1.10909 1.32987 1.44512 0.86575 0.79512 0.80009 0.82531 1.21112 1.21844 1.20384 1.22398 0.96615 0.91071 0.90604 1.23515 1.04145 1.02817 0.93057 1.22444 0.89412 0.91022 0.98928 1.67115 1.10730 1.22899 1.24547 0.91553 0.90418 0.91759 0.89195 0.91033 0.91919 0.91986 0.82971 0.90343 0.90275 0.89623 0.89426 0.92333 0.93942 0.93397 0.80701 0.93062 0.90073 0.90573 0.81015 0.81687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.56 37.16 0.36 -0.53 16 2 C 0.08 0.64 3.11 -26.73 -0.08 0.56 16 3 C -0.17 -1.16 9.53 37.15 0.35 -0.80 16 4 O -0.30 -3.15 9.76 -18.74 -0.18 -3.34 16 5 C 0.32 3.54 7.45 -17.16 -0.13 3.42 16 6 C -0.14 -1.58 9.61 -38.84 -0.37 -1.95 16 7 C -0.05 -0.52 5.90 -104.68 -0.62 -1.14 16 8 C 0.57 7.68 7.83 -12.19 -0.10 7.59 16 9 O -0.53 -8.82 16.76 5.35 0.09 -8.73 16 10 N -0.61 -7.25 3.33 -171.70 -0.57 -7.82 16 11 C 0.08 0.79 4.88 -3.06 -0.01 0.78 16 12 C -0.12 -1.41 6.36 -24.90 -0.16 -1.57 16 13 C -0.11 -1.43 2.69 -88.47 -0.24 -1.66 16 14 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 15 C 0.19 3.24 2.48 -67.93 -0.17 3.07 16 16 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 17 C -0.17 -2.78 9.30 37.16 0.35 -2.43 16 18 N -0.75 -16.05 4.87 -53.43 -0.26 -16.31 16 19 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 20 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 23 Si 0.88 21.16 27.74 -169.99 -4.71 16.44 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 27 C 0.12 1.46 5.01 -2.52 -0.01 1.45 16 28 C -0.22 -1.88 8.67 -39.03 -0.34 -2.21 16 29 C 0.14 1.12 11.17 -17.61 -0.20 0.92 16 30 N -0.53 -5.31 8.61 -13.38 -0.12 -5.43 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.74 6.98 -51.93 -0.36 0.38 16 35 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.15 1.79 7.76 -52.49 -0.41 1.39 16 39 H 0.08 0.62 6.69 -51.93 -0.35 0.27 16 40 H 0.08 0.59 6.81 -51.93 -0.35 0.24 16 41 H 0.09 1.03 7.92 -51.93 -0.41 0.62 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.58 6.85 -51.93 -0.36 0.23 16 45 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 46 H 0.36 7.66 5.66 -40.82 -0.23 7.43 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 49 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 50 H 0.17 1.17 2.97 -52.75 -0.16 1.01 16 51 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -32.87 406.56 -8.58 -41.45 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.11 Total: 6.30 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.62 Total: -1.05 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.17 Total: -57.21 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.87 -8.58 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484351795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.049 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds