Wall clock time and date at job start Wed Apr 1 2020 04:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 O 1.42899 * 109.47038 * 120.00120 * 2 1 3 5 5 C 1.35680 * 117.00107 * 149.99833 * 4 2 1 6 6 C 1.38901 * 119.62422 * 179.97438 * 5 4 2 7 7 C 1.39571 * 118.94423 * 179.97438 * 6 5 4 8 8 C 1.48161 * 120.88877 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00014 * 352.41161 * 8 7 6 10 10 N 1.34772 * 120.00279 * 172.41080 * 8 7 6 11 11 C 1.47027 * 125.64706 * 5.09019 * 10 8 7 12 12 C 1.54317 * 107.27292 * 181.02601 * 11 10 8 13 13 C 1.55158 * 102.94604 * 22.18944 * 12 11 10 14 14 H 1.08999 * 111.03396 * 82.58636 * 13 12 11 15 15 C 1.53000 * 111.00586 * 206.42910 * 13 12 11 16 16 H 1.08996 * 109.47250 * 47.54032 * 15 13 12 17 17 C 1.52997 * 109.47012 * 167.53843 * 15 13 12 18 18 N 1.46499 * 109.46805 * 287.53476 * 15 13 12 19 19 C 1.36941 * 119.99832 * 155.27274 * 18 15 13 20 20 H 1.08002 * 119.99818 * 359.73413 * 19 18 15 21 21 C 1.38806 * 120.00331 * 179.72748 * 19 18 15 22 22 N 1.31624 * 120.00379 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99887 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47008 * 90.00131 * 23 21 19 25 25 H 1.48498 * 109.47293 * 210.00206 * 23 21 19 26 26 H 1.48504 * 109.47133 * 330.00357 * 23 21 19 27 27 C 1.47424 * 125.65212 * 185.04392 * 10 8 7 28 28 C 1.39965 * 118.22058 * 0.27968 * 7 6 5 29 29 C 1.37982 * 119.13054 * 359.43486 * 28 7 6 30 30 N 1.31903 * 120.97585 * 0.57418 * 29 28 7 31 31 H 1.09010 * 109.46789 * 300.00376 * 1 2 3 32 32 H 1.08996 * 109.47008 * 59.99856 * 1 2 3 33 33 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46773 * 239.99804 * 2 1 3 35 35 H 1.09008 * 109.46971 * 299.99836 * 3 2 1 36 36 H 1.08996 * 109.47472 * 60.00232 * 3 2 1 37 37 H 1.08999 * 109.46723 * 180.02562 * 3 2 1 38 38 H 1.07992 * 120.52445 * 359.97438 * 6 5 4 39 39 H 1.09006 * 109.87978 * 300.43805 * 11 10 8 40 40 H 1.09000 * 109.88274 * 61.60035 * 11 10 8 41 41 H 1.09006 * 110.71749 * 263.82700 * 12 11 10 42 42 H 1.08997 * 110.72623 * 140.55823 * 12 11 10 43 43 H 1.09003 * 109.47046 * 184.90311 * 17 15 13 44 44 H 1.08996 * 109.47596 * 304.90229 * 17 15 13 45 45 H 1.09007 * 109.47100 * 64.90383 * 17 15 13 46 46 H 0.96997 * 120.00396 * 335.00576 * 18 15 13 47 47 H 0.96996 * 119.99904 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.36468 * 37.07556 * 27 10 8 49 49 H 1.08997 * 110.46186 * 274.79379 * 27 10 8 50 50 H 1.07996 * 120.43457 * 179.72302 * 28 7 6 51 51 H 1.08001 * 119.51053 * 180.31926 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.1987 -1.3131 1.0653 6 6 3.7134 -1.9851 2.1665 7 6 4.9408 -2.6385 2.0462 8 6 5.5295 -3.3688 3.1931 9 8 5.0153 -3.2911 4.2914 10 7 6.6351 -4.1194 3.0183 11 6 7.4165 -4.2178 1.7767 12 6 8.5708 -5.2077 2.0391 13 6 8.0466 -6.0436 3.2365 14 1 7.3858 -6.8413 2.8972 15 6 9.2055 -6.6085 4.0602 16 1 9.9295 -5.8182 4.2585 17 6 8.6706 -7.1544 5.3856 18 7 9.8543 -7.6890 3.3134 19 6 11.1623 -8.0063 3.5657 20 1 11.7169 -7.4571 4.3122 21 6 11.7755 -9.0338 2.8621 22 7 13.0326 -9.3391 3.1050 23 14 10.8165 -9.9833 1.5705 24 1 10.9733 -9.3205 0.2509 25 1 11.3346 -11.3727 1.4912 26 1 9.3791 -10.0115 1.9425 27 6 7.2620 -4.9769 4.0405 28 6 5.6034 -2.5807 0.8146 29 6 5.0190 -1.8959 -0.2310 30 7 3.8570 -1.2901 -0.0807 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 -0.8901 36 1 1.6768 1.9563 0.8900 37 1 3.1300 1.4424 -0.0005 38 1 3.1724 -2.0017 3.1010 39 1 6.7850 -4.5902 0.9699 40 1 7.8193 -3.2397 1.5136 41 1 9.4819 -4.6744 2.3106 42 1 8.7393 -5.8430 1.1696 43 1 9.5047 -7.4771 6.0087 44 1 8.1127 -6.3731 5.9017 45 1 8.0134 -8.0019 5.1908 46 1 9.3563 -8.1822 2.6429 47 1 13.4611 -10.0569 2.6130 48 1 6.4988 -5.4520 4.6569 49 1 7.9420 -4.3942 4.6619 50 1 6.5573 -3.0697 0.6831 51 1 5.5224 -1.8518 -1.1855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484351795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:14 Heat of formation + Delta-G solvation = -24.541342 kcal Electronic energy + Delta-G solvation = -30246.142000 eV Core-core repulsion = 26146.231027 eV Total energy + Delta-G solvation = -4099.910972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13796 -41.08242 -39.40214 -38.89870 -37.02612 -34.57246 -34.23622 -33.71884 -32.18382 -31.46876 -31.01300 -28.93714 -28.17278 -26.87479 -25.66211 -24.58395 -24.09118 -22.72077 -22.44805 -21.31241 -20.99751 -19.70540 -19.32624 -18.34465 -17.62282 -17.23724 -16.83269 -16.67959 -16.64836 -16.46167 -15.87227 -15.46485 -15.20623 -15.08519 -15.02986 -14.82046 -14.69802 -14.30672 -14.11676 -14.03004 -13.92762 -13.50587 -13.44540 -13.35399 -13.28984 -13.19816 -12.88961 -12.83398 -12.52305 -12.33962 -11.99422 -11.92691 -11.87941 -11.81578 -11.69967 -11.61256 -11.46000 -11.32403 -11.07682 -10.92077 -10.60266 -9.82618 -9.57878 -9.26776 -7.96069 -5.28985 -0.44468 0.06702 1.42209 1.45929 1.53073 1.57062 1.69423 2.06981 2.53950 2.71376 3.12038 3.25777 3.35616 3.44159 3.56744 3.77197 3.85142 3.87278 3.98066 3.99976 4.02109 4.14532 4.24907 4.26831 4.33567 4.45454 4.55620 4.57100 4.61788 4.68417 4.68757 4.70493 4.81641 4.83693 4.85856 4.88139 4.92440 4.93904 5.02104 5.11076 5.18380 5.19814 5.24738 5.29745 5.37025 5.37975 5.57632 5.84306 6.20119 6.27432 6.29946 6.70944 6.86031 7.14720 7.90494 8.10018 9.25556 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.001958 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.058858 B =14296.280775 C =14956.544398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.164 4.164 4 O -0.316 6.316 5 C 0.312 3.688 6 C -0.156 4.156 7 C -0.057 4.057 8 C 0.569 3.431 9 O -0.573 6.573 10 N -0.603 5.603 11 C 0.085 3.915 12 C -0.121 4.121 13 C -0.097 4.097 14 H 0.087 0.913 15 C 0.187 3.813 16 H 0.051 0.949 17 C -0.164 4.164 18 N -0.745 5.745 19 C -0.221 4.221 20 H 0.055 0.945 21 C -0.067 4.067 22 N -0.987 5.987 23 Si 0.954 3.046 24 H -0.273 1.273 25 H -0.305 1.305 26 H -0.252 1.252 27 C 0.118 3.882 28 C -0.203 4.203 29 C 0.144 3.856 30 N -0.533 5.533 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.366 0.634 47 H 0.255 0.745 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.197 0.803 51 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.288 20.273 -11.671 33.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.221 4.221 4 O -0.224 6.224 5 C 0.134 3.866 6 C -0.178 4.178 7 C -0.067 4.067 8 C 0.358 3.642 9 O -0.453 6.453 10 N -0.334 5.334 11 C -0.036 4.036 12 C -0.159 4.159 13 C -0.117 4.117 14 H 0.105 0.895 15 C 0.078 3.922 16 H 0.069 0.931 17 C -0.224 4.224 18 N -0.388 5.388 19 C -0.352 4.352 20 H 0.073 0.927 21 C -0.258 4.258 22 N -0.638 5.638 23 Si 0.782 3.218 24 H -0.198 1.198 25 H -0.233 1.233 26 H -0.177 1.177 27 C -0.005 4.005 28 C -0.222 4.222 29 C -0.012 4.012 30 N -0.257 5.257 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.199 0.801 47 H 0.064 0.936 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.213 0.787 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.990 20.873 -11.453 33.799 hybrid contribution 0.420 -1.419 0.467 1.552 sum -23.570 19.453 -10.986 32.476 Atomic orbital electron populations 1.21935 0.91315 1.03147 1.04091 1.22616 0.95677 0.92960 0.86907 1.22191 1.01195 0.95145 1.03597 1.86304 1.31350 1.64530 1.40210 1.19631 0.86759 0.90670 0.89525 1.21059 0.96846 1.00467 0.99381 1.19940 0.94669 0.97532 0.94597 1.18060 0.79452 0.78939 0.87737 1.90772 1.62625 1.64610 1.27319 1.48392 1.25644 1.44002 1.15387 1.22915 0.92980 1.01290 0.86409 1.22715 0.97419 0.96990 0.98772 1.22500 0.96366 0.96810 0.96053 0.89476 1.20265 0.92022 0.89558 0.90322 0.93137 1.22400 1.00232 1.01074 0.98687 1.42698 1.09744 1.40302 1.46088 1.18979 0.87547 1.12528 1.16149 0.92699 1.25478 0.96856 1.00641 1.02796 1.69894 1.13201 1.34165 1.46546 0.85427 0.79151 0.77415 0.79841 1.19847 1.23285 1.17659 1.22271 0.96346 0.91047 0.90789 1.23751 1.04498 1.02189 0.91749 1.23159 0.88533 0.89282 1.00209 1.67220 1.11468 1.23143 1.23897 0.91676 0.88188 0.92219 0.89496 0.88940 0.92130 0.93358 0.84499 0.87783 0.87565 0.90288 0.88836 0.94904 0.91286 0.93305 0.80084 0.93605 0.90776 0.90592 0.78696 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.56 71.98 0.69 -0.84 16 2 C 0.07 1.09 3.11 30.59 0.10 1.18 16 3 C -0.16 -2.03 9.53 71.98 0.69 -1.35 16 4 O -0.32 -6.61 9.76 -89.98 -0.88 -7.49 16 5 C 0.31 6.70 7.45 84.80 0.63 7.33 16 6 C -0.16 -3.63 9.61 22.75 0.22 -3.41 16 7 C -0.06 -1.21 5.90 -19.90 -0.12 -1.32 16 8 C 0.57 14.71 7.83 86.88 0.68 15.39 16 9 O -0.57 -19.36 16.76 -3.78 -0.06 -19.42 16 10 N -0.60 -13.04 3.33 -815.44 -2.71 -15.75 16 11 C 0.08 1.23 4.88 86.73 0.42 1.66 16 12 C -0.12 -2.40 6.36 31.78 0.20 -2.20 16 13 C -0.10 -2.38 2.69 -9.40 -0.03 -2.41 16 14 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 15 C 0.19 6.15 2.48 44.99 0.11 6.26 16 16 H 0.05 1.77 7.92 -2.39 -0.02 1.75 16 17 C -0.16 -5.25 9.30 71.98 0.67 -4.58 16 18 N -0.74 -31.16 4.87 -322.95 -1.57 -32.74 16 19 C -0.22 -11.83 10.41 84.03 0.87 -10.95 16 20 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 21 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 22 N -0.99 -61.73 13.97 21.65 0.30 -61.43 16 23 Si 0.95 43.21 27.74 68.60 1.90 45.11 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 26 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 27 C 0.12 2.79 5.01 86.86 0.43 3.23 16 28 C -0.20 -2.79 8.67 22.63 0.20 -2.59 16 29 C 0.14 1.80 11.17 84.62 0.94 2.74 16 30 N -0.53 -9.54 8.61 -309.14 -2.66 -12.20 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 1.31 6.98 -2.39 -0.02 1.30 16 35 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.14 3.48 7.76 -2.91 -0.02 3.46 16 39 H 0.10 1.08 6.69 -2.38 -0.02 1.06 16 40 H 0.11 1.06 6.81 -2.39 -0.02 1.04 16 41 H 0.08 1.70 7.92 -2.38 -0.02 1.68 16 42 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.82 6.85 -2.39 -0.02 1.81 16 45 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.37 14.59 5.66 -92.71 -0.52 14.06 16 47 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.07 1.88 7.90 -2.39 -0.02 1.86 16 49 H 0.08 1.81 8.03 -2.39 -0.02 1.79 16 50 H 0.20 1.64 2.97 -3.15 -0.01 1.63 16 51 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -74.62 406.56 1.85 -72.76 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.35 Total: 26.31 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 7.18 Total: 4.84 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.64 Total: -122.12 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.94 Total: -26.91 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.90 Total: 45.11 kcal Total: -74.62 1.85 -72.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484351795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.223 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds