Wall clock time and date at job start Wed Apr 1 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99618 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00424 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47074 * 90.00007 * 9 7 5 11 11 H 1.48499 * 109.46948 * 210.00030 * 9 7 5 12 12 H 1.48495 * 109.46973 * 329.99849 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.08997 * 109.50934 * 174.89776 * 13 2 1 15 15 C 1.53298 * 109.51065 * 294.99814 * 13 2 1 16 16 N 1.47152 * 108.38576 * 172.22658 * 15 13 2 17 17 C 1.34774 * 120.98322 * 129.44222 * 16 15 13 18 18 O 1.21288 * 119.99644 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99919 * 180.02562 * 17 16 15 20 20 N 1.46503 * 109.46748 * 179.97438 * 19 17 16 21 21 C 1.46496 * 120.00579 * 269.99790 * 20 19 17 22 22 C 1.39683 * 119.99724 * 90.00245 * 20 19 17 23 23 C 1.38910 * 120.07263 * 359.71809 * 22 20 19 24 24 C 1.38107 * 119.92484 * 179.77285 * 23 22 20 25 25 C 1.38285 * 120.07077 * 0.50520 * 24 23 22 26 26 C 1.38289 * 120.15315 * 359.74973 * 25 24 23 27 27 C 1.38110 * 120.07134 * 359.97438 * 26 25 24 28 28 C 1.47149 * 118.03251 * 309.46546 * 16 15 13 29 29 C 1.53295 * 108.38759 * 50.53616 * 28 16 15 30 30 O 1.42955 * 109.51243 * 54.74234 * 13 2 1 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 35 35 H 0.97001 * 120.00319 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.67910 * 291.95037 * 15 13 2 37 37 H 1.08998 * 109.67757 * 52.46173 * 15 13 2 38 38 H 1.09000 * 109.47032 * 299.99682 * 19 17 16 39 39 H 1.08993 * 109.47044 * 59.99880 * 19 17 16 40 40 H 1.08998 * 109.47162 * 89.99959 * 21 20 19 41 41 H 1.08996 * 109.47576 * 210.00469 * 21 20 19 42 42 H 1.09005 * 109.46562 * 330.00223 * 21 20 19 43 43 H 1.08001 * 120.04087 * 0.02562 * 23 22 20 44 44 H 1.07996 * 119.96673 * 180.25579 * 24 23 22 45 45 H 1.07998 * 119.92714 * 179.72361 * 25 24 23 46 46 H 1.07996 * 119.96634 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.03426 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.67986 * 170.25571 * 28 16 15 49 49 H 1.08994 * 109.68238 * 290.80947 * 28 16 15 50 50 H 1.09003 * 109.51319 * 67.61644 * 29 28 16 51 51 H 1.08997 * 109.51400 * 187.72496 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.7375 -0.0054 -4.6429 9 14 3.0556 -2.4746 -3.4253 10 1 1.8582 -3.2930 -3.7441 11 1 4.1306 -2.7667 -4.4073 12 1 3.5312 -2.8048 -2.0579 13 6 2.0400 -0.7213 1.2493 14 1 3.1261 -0.8015 1.2054 15 6 1.6350 0.0697 2.4984 16 7 1.9698 -0.7334 3.6851 17 6 2.6772 -0.2051 4.7034 18 8 3.0481 0.9484 4.6498 19 6 3.0082 -1.0480 5.9080 20 7 3.7779 -0.2500 6.8656 21 6 5.2406 -0.2229 6.7882 22 6 3.1172 0.4850 7.8527 23 6 1.7300 0.4651 7.9240 24 6 1.0801 1.1892 8.9041 25 6 1.8082 1.9418 9.8073 26 6 3.1890 1.9681 9.7358 27 6 3.8455 1.2418 8.7617 28 6 1.5098 -2.1306 3.7269 29 6 1.9209 -2.8144 2.4180 30 8 1.4658 -2.0289 1.3135 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 3.0609 -0.4626 -5.4349 36 1 2.1798 1.0133 2.5280 37 1 0.5629 0.2654 2.4773 38 1 2.0854 -1.3890 6.3775 39 1 3.5979 -1.9102 5.5972 40 1 5.5548 0.5912 6.1351 41 1 5.6545 -0.0698 7.7847 42 1 5.6007 -1.1703 6.3868 43 1 1.1606 -0.1193 7.2164 44 1 0.0019 1.1709 8.9627 45 1 1.2973 2.5107 10.5700 46 1 3.7546 2.5566 10.4430 47 1 4.9239 1.2630 8.7062 48 1 1.9718 -2.6441 4.5701 49 1 0.4251 -2.1570 3.8299 50 1 3.0067 -2.9029 2.3789 51 1 1.4726 -3.8067 2.3692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485651673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:14 Heat of formation + Delta-G solvation = -7.923078 kcal Electronic energy + Delta-G solvation = -31111.655565 eV Core-core repulsion = 27012.465215 eV Total energy + Delta-G solvation = -4099.190350 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.72284 -39.68505 -38.48520 -36.21920 -35.72875 -34.68625 -32.57436 -31.46040 -30.81022 -30.26379 -29.25205 -28.83843 -27.17575 -25.49732 -24.58714 -23.45977 -22.65344 -22.13169 -21.14402 -19.86834 -19.36336 -18.04766 -17.86597 -17.46115 -16.72168 -16.11826 -15.95447 -15.62536 -15.50140 -15.23823 -14.85309 -14.66462 -14.43074 -14.41420 -13.96809 -13.81857 -13.70912 -13.38106 -13.19906 -12.84825 -12.81981 -12.74858 -12.43572 -12.35134 -12.22840 -12.11942 -11.65884 -11.60577 -11.31923 -11.05266 -10.95915 -10.79328 -10.68919 -10.56184 -10.33471 -10.06444 -9.98553 -9.74675 -9.57766 -9.11819 -8.93046 -8.63133 -7.57974 -7.26124 -5.75693 -3.10953 1.24348 1.40135 2.38788 2.46418 2.91853 3.39228 3.43789 3.46450 3.70555 3.77698 4.19841 4.44986 4.54341 4.55965 4.61096 4.65776 4.74788 4.82674 4.89930 4.91551 4.98194 5.00220 5.17512 5.18776 5.25705 5.28265 5.36525 5.50063 5.50391 5.50539 5.53044 5.54636 5.67484 5.69477 5.78162 5.87078 6.00768 6.10084 6.22095 6.28022 6.32942 6.43871 6.46813 6.61391 6.73199 6.84991 7.05338 7.13874 7.20674 7.27841 7.96120 8.00643 8.43462 9.22583 9.94858 10.15765 11.42505 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.002217 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.431755 B =12629.283912 C =12736.150100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.068 0.932 4 N -0.744 5.744 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C 0.073 3.927 14 H 0.063 0.937 15 C 0.084 3.916 16 N -0.615 5.615 17 C 0.489 3.511 18 O -0.522 6.522 19 C 0.108 3.892 20 N -0.613 5.613 21 C 0.094 3.906 22 C 0.223 3.777 23 C -0.195 4.195 24 C -0.072 4.072 25 C -0.181 4.181 26 C -0.074 4.074 27 C -0.194 4.194 28 C 0.072 3.928 29 C 0.045 3.955 30 O -0.362 6.362 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.366 0.634 35 H 0.259 0.741 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.053 0.947 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -4.878 31.009 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 H 0.086 0.914 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C 0.014 3.986 14 H 0.081 0.919 15 C -0.039 4.039 16 N -0.351 5.351 17 C 0.275 3.725 18 O -0.396 6.396 19 C -0.020 4.020 20 N -0.323 5.323 21 C -0.049 4.049 22 C 0.123 3.877 23 C -0.217 4.217 24 C -0.091 4.091 25 C -0.201 4.201 26 C -0.093 4.093 27 C -0.216 4.216 28 C -0.052 4.052 29 C -0.033 4.033 30 O -0.280 6.280 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.199 0.801 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.071 0.929 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.279 -4.223 30.539 30.831 hybrid contribution 0.454 -1.317 -0.082 1.395 sum 0.175 -5.540 30.457 30.957 Atomic orbital electron populations 1.22379 0.98090 1.01648 1.00132 1.20171 0.93053 0.94869 0.83893 0.91427 1.42698 1.79515 1.09715 1.06752 1.19080 1.36978 0.95613 0.85573 0.89152 1.24662 1.01432 0.97528 0.95533 1.69706 1.52673 1.35552 1.00231 0.86523 0.78082 0.86889 0.76901 1.21058 1.21900 1.20355 1.23019 0.97537 0.82978 0.95104 0.91872 1.22445 1.02084 0.95829 0.83534 1.48270 1.54930 1.12754 1.19165 1.21493 0.77966 0.88685 0.84333 1.90729 1.51939 1.17618 1.79356 1.21330 0.98792 0.93373 0.88528 1.45939 1.05104 1.50858 1.30409 1.21688 0.78900 1.02021 1.02254 1.17770 0.91453 0.90649 0.87864 1.20622 0.92322 1.06119 1.02622 1.20872 0.99437 0.95018 0.93776 1.20900 0.94139 1.03384 1.01647 1.20886 0.94479 0.97015 0.96874 1.20667 0.99601 1.02670 0.98658 1.22500 1.01058 0.81834 0.99764 1.22915 0.99452 0.95223 0.85753 1.88081 1.67698 1.26031 1.46186 0.92365 0.94335 0.92527 0.80104 0.93093 0.88164 0.90002 0.87746 0.87791 0.92780 0.91026 0.91557 0.86678 0.86280 0.86555 0.86262 0.86045 0.89375 0.90105 0.92914 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.06 37.16 0.34 -2.53 16 2 C 0.19 3.64 2.77 -67.93 -0.19 3.45 16 3 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 4 N -0.74 -17.73 4.91 -53.43 -0.26 -17.99 16 5 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -29.47 13.97 55.49 0.78 -28.70 16 9 Si 0.89 22.42 27.74 -169.99 -4.71 17.71 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 13 C 0.07 1.16 2.61 -26.57 -0.07 1.09 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.08 1.15 5.83 -3.53 -0.02 1.13 16 16 N -0.62 -7.00 3.02 -172.28 -0.52 -7.52 16 17 C 0.49 5.93 7.78 -10.99 -0.09 5.84 16 18 O -0.52 -8.62 15.90 5.55 0.09 -8.53 16 19 C 0.11 0.89 4.05 -5.19 -0.02 0.87 16 20 N -0.61 -5.92 2.50 -181.00 -0.45 -6.37 16 21 C 0.09 0.74 10.23 59.84 0.61 1.36 16 22 C 0.22 2.38 6.55 -83.79 -0.55 1.84 16 23 C -0.19 -2.00 9.20 -39.38 -0.36 -2.37 16 24 C -0.07 -0.68 10.04 -39.61 -0.40 -1.07 16 25 C -0.18 -1.62 10.04 -39.55 -0.40 -2.02 16 26 C -0.07 -0.66 10.04 -39.61 -0.40 -1.06 16 27 C -0.19 -1.90 9.21 -39.38 -0.36 -2.27 16 28 C 0.07 0.58 6.54 -3.54 -0.02 0.56 16 29 C 0.04 0.45 6.99 37.31 0.26 0.71 16 30 O -0.36 -5.45 9.24 -35.23 -0.33 -5.77 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.56 6.42 -51.93 -0.33 0.23 16 33 H 0.06 1.02 7.55 -51.93 -0.39 0.62 16 34 H 0.37 8.76 5.45 -40.82 -0.22 8.54 16 35 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 36 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 37 H 0.08 1.08 6.27 -51.93 -0.33 0.75 16 38 H 0.10 0.67 6.08 -51.93 -0.32 0.36 16 39 H 0.10 0.60 7.41 -51.93 -0.38 0.21 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.45 6.20 -51.93 -0.32 0.13 16 42 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 43 H 0.12 1.07 6.15 -52.49 -0.32 0.75 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.12 1.01 6.14 -52.49 -0.32 0.68 16 48 H 0.09 0.42 6.05 -51.93 -0.31 0.10 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -36.02 401.03 -9.13 -45.15 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.85 Total: 7.43 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.92 Total: -1.46 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.46 Total: -60.57 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.24 Total: -14.30 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.02 -9.13 -45.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485651673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.231 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds