Wall clock time and date at job start Wed Apr 1 2020 04:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99618 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00424 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47074 * 90.00007 * 9 7 5 11 11 H 1.48499 * 109.46948 * 210.00030 * 9 7 5 12 12 H 1.48495 * 109.46973 * 329.99849 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.08997 * 109.50934 * 174.89776 * 13 2 1 15 15 C 1.53298 * 109.51065 * 294.99814 * 13 2 1 16 16 N 1.47152 * 108.38576 * 172.22658 * 15 13 2 17 17 C 1.34774 * 120.98322 * 129.44222 * 16 15 13 18 18 O 1.21288 * 119.99644 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99919 * 180.02562 * 17 16 15 20 20 N 1.46503 * 109.46748 * 179.97438 * 19 17 16 21 21 C 1.46496 * 120.00579 * 269.99790 * 20 19 17 22 22 C 1.39683 * 119.99724 * 90.00245 * 20 19 17 23 23 C 1.38910 * 120.07263 * 359.71809 * 22 20 19 24 24 C 1.38107 * 119.92484 * 179.77285 * 23 22 20 25 25 C 1.38285 * 120.07077 * 0.50520 * 24 23 22 26 26 C 1.38289 * 120.15315 * 359.74973 * 25 24 23 27 27 C 1.38110 * 120.07134 * 359.97438 * 26 25 24 28 28 C 1.47149 * 118.03251 * 309.46546 * 16 15 13 29 29 C 1.53295 * 108.38759 * 50.53616 * 28 16 15 30 30 O 1.42955 * 109.51243 * 54.74234 * 13 2 1 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 35 35 H 0.97001 * 120.00319 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.67910 * 291.95037 * 15 13 2 37 37 H 1.08998 * 109.67757 * 52.46173 * 15 13 2 38 38 H 1.09000 * 109.47032 * 299.99682 * 19 17 16 39 39 H 1.08993 * 109.47044 * 59.99880 * 19 17 16 40 40 H 1.08998 * 109.47162 * 89.99959 * 21 20 19 41 41 H 1.08996 * 109.47576 * 210.00469 * 21 20 19 42 42 H 1.09005 * 109.46562 * 330.00223 * 21 20 19 43 43 H 1.08001 * 120.04087 * 0.02562 * 23 22 20 44 44 H 1.07996 * 119.96673 * 180.25579 * 24 23 22 45 45 H 1.07998 * 119.92714 * 179.72361 * 25 24 23 46 46 H 1.07996 * 119.96634 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.03426 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.67986 * 170.25571 * 28 16 15 49 49 H 1.08994 * 109.68238 * 290.80947 * 28 16 15 50 50 H 1.09003 * 109.51319 * 67.61644 * 29 28 16 51 51 H 1.08997 * 109.51400 * 187.72496 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.7375 -0.0054 -4.6429 9 14 3.0556 -2.4746 -3.4253 10 1 1.8582 -3.2930 -3.7441 11 1 4.1306 -2.7667 -4.4073 12 1 3.5312 -2.8048 -2.0579 13 6 2.0400 -0.7213 1.2493 14 1 3.1261 -0.8015 1.2054 15 6 1.6350 0.0697 2.4984 16 7 1.9698 -0.7334 3.6851 17 6 2.6772 -0.2051 4.7034 18 8 3.0481 0.9484 4.6498 19 6 3.0082 -1.0480 5.9080 20 7 3.7779 -0.2500 6.8656 21 6 5.2406 -0.2229 6.7882 22 6 3.1172 0.4850 7.8527 23 6 1.7300 0.4651 7.9240 24 6 1.0801 1.1892 8.9041 25 6 1.8082 1.9418 9.8073 26 6 3.1890 1.9681 9.7358 27 6 3.8455 1.2418 8.7617 28 6 1.5098 -2.1306 3.7269 29 6 1.9209 -2.8144 2.4180 30 8 1.4658 -2.0289 1.3135 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 3.0609 -0.4626 -5.4349 36 1 2.1798 1.0133 2.5280 37 1 0.5629 0.2654 2.4773 38 1 2.0854 -1.3890 6.3775 39 1 3.5979 -1.9102 5.5972 40 1 5.5548 0.5912 6.1351 41 1 5.6545 -0.0698 7.7847 42 1 5.6007 -1.1703 6.3868 43 1 1.1606 -0.1193 7.2164 44 1 0.0019 1.1709 8.9627 45 1 1.2973 2.5107 10.5700 46 1 3.7546 2.5566 10.4430 47 1 4.9239 1.2630 8.7062 48 1 1.9718 -2.6441 4.5701 49 1 0.4251 -2.1570 3.8299 50 1 3.0067 -2.9029 2.3789 51 1 1.4726 -3.8067 2.3692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485651673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:13 Heat of formation + Delta-G solvation = -31.961848 kcal Electronic energy + Delta-G solvation = -31112.697965 eV Core-core repulsion = 27012.465215 eV Total energy + Delta-G solvation = -4100.232750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.62914 -40.47905 -39.49585 -37.29052 -36.89342 -35.76511 -34.38977 -32.50622 -32.01867 -31.02549 -30.23522 -29.95647 -28.20403 -26.55240 -25.79334 -24.70534 -23.68699 -23.06013 -21.95262 -21.35150 -20.21262 -19.77943 -18.71616 -18.44032 -17.75461 -17.08333 -16.85347 -16.68501 -16.42573 -16.28447 -16.13036 -15.79142 -15.55313 -15.22619 -15.07055 -14.71127 -14.59877 -14.50608 -14.33271 -14.27697 -14.15001 -13.85246 -13.48176 -13.29698 -13.11541 -12.95362 -12.89319 -12.83028 -12.53391 -12.34061 -12.27498 -12.13817 -11.83494 -11.75286 -11.69069 -11.62813 -11.35609 -11.13372 -10.98734 -10.58024 -9.80242 -9.61539 -9.33763 -8.26648 -8.02764 -5.35975 0.55904 0.70647 1.36540 1.40320 1.47559 1.51244 1.69123 2.20911 2.48040 2.73679 3.01593 3.28796 3.38400 3.47352 3.85036 3.87837 3.92398 3.95078 3.97759 4.07012 4.11460 4.23433 4.28188 4.34007 4.35211 4.39194 4.45361 4.57945 4.59750 4.61803 4.64109 4.72020 4.78645 4.81242 4.85698 4.89520 4.95035 5.03077 5.15517 5.20338 5.27065 5.35426 5.56355 5.62068 5.75681 5.76631 5.96818 6.15611 6.18005 6.23875 6.35264 6.51824 7.06927 7.08084 7.82860 8.03769 9.18676 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.002217 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.431755 B =12629.283912 C =12736.150100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.179 3.821 3 H 0.054 0.946 4 N -0.747 5.747 5 C -0.229 4.229 6 H 0.057 0.943 7 C -0.066 4.066 8 N -0.984 5.984 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.255 1.255 13 C 0.092 3.908 14 H 0.046 0.954 15 C 0.093 3.907 16 N -0.614 5.614 17 C 0.486 3.514 18 O -0.576 6.576 19 C 0.110 3.890 20 N -0.619 5.619 21 C 0.092 3.908 22 C 0.204 3.796 23 C -0.211 4.211 24 C -0.082 4.082 25 C -0.190 4.190 26 C -0.082 4.082 27 C -0.210 4.210 28 C 0.073 3.927 29 C 0.034 3.966 30 O -0.383 6.383 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.028 0.972 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.131 0.869 49 H 0.095 0.905 50 H 0.052 0.948 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 -7.794 34.194 35.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 H 0.072 0.928 4 N -0.390 5.390 5 C -0.360 4.360 6 H 0.075 0.925 7 C -0.257 4.257 8 N -0.634 5.634 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.180 1.180 13 C 0.032 3.968 14 H 0.064 0.936 15 C -0.031 4.031 16 N -0.349 5.349 17 C 0.274 3.726 18 O -0.454 6.454 19 C -0.017 4.017 20 N -0.329 5.329 21 C -0.051 4.051 22 C 0.103 3.897 23 C -0.233 4.233 24 C -0.101 4.101 25 C -0.210 4.210 26 C -0.100 4.100 27 C -0.232 4.232 28 C -0.049 4.049 29 C -0.042 4.042 30 O -0.302 6.302 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.201 0.799 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.046 0.954 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.141 0.859 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.157 0.843 47 H 0.148 0.852 48 H 0.149 0.851 49 H 0.113 0.887 50 H 0.071 0.929 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.782 -7.175 33.798 34.560 hybrid contribution 0.562 -0.319 -0.991 1.183 sum -0.221 -7.495 32.807 33.653 Atomic orbital electron populations 1.22191 0.96446 1.01752 1.00479 1.20379 0.94106 0.94475 0.83949 0.92791 1.42675 1.79861 1.09744 1.06740 1.19037 1.35168 0.94459 0.87300 0.92498 1.25498 1.02410 1.02661 0.95146 1.69888 1.54720 1.37705 1.01129 0.85367 0.77675 0.80707 0.77760 1.20432 1.22268 1.17983 1.22501 0.96191 0.84012 0.94070 0.93594 1.22124 1.02025 0.95024 0.83966 1.48371 1.54562 1.13942 1.17989 1.22332 0.76761 0.88399 0.85128 1.90711 1.54020 1.20178 1.80503 1.21559 1.00435 0.93106 0.86595 1.46126 1.05678 1.50864 1.30207 1.21761 0.78433 1.02236 1.02631 1.18039 0.91945 0.91193 0.88483 1.20832 0.92448 1.06785 1.03219 1.21177 1.00505 0.94794 0.93614 1.21213 0.94373 1.03402 1.02023 1.21205 0.94895 0.96897 0.97007 1.20920 1.00274 1.02970 0.99028 1.22764 1.02315 0.79684 1.00132 1.23293 0.99848 0.95935 0.85172 1.88028 1.67929 1.25470 1.48758 0.94864 0.91122 0.92408 0.79880 0.93378 0.90367 0.89244 0.85339 0.84433 0.95355 0.89770 0.89309 0.85945 0.84603 0.84780 0.84348 0.85236 0.85133 0.88694 0.92947 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.06 71.98 0.65 -4.53 16 2 C 0.18 6.92 2.77 44.99 0.12 7.04 16 3 H 0.05 2.21 8.08 -2.39 -0.02 2.19 16 4 N -0.75 -35.75 4.91 -322.94 -1.59 -37.34 16 5 C -0.23 -13.30 10.41 84.03 0.87 -12.42 16 6 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 7 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 8 N -0.98 -64.08 13.97 21.65 0.30 -63.78 16 9 Si 0.96 46.59 27.74 68.60 1.90 48.49 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.26 -11.31 6.52 99.48 0.65 -10.67 16 13 C 0.09 2.83 2.61 30.70 0.08 2.91 16 14 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 15 C 0.09 2.45 5.83 86.35 0.50 2.95 16 16 N -0.61 -12.45 3.02 -817.35 -2.47 -14.92 16 17 C 0.49 10.87 7.78 87.66 0.68 11.55 16 18 O -0.58 -19.06 15.90 -3.05 -0.05 -19.10 16 19 C 0.11 1.45 4.05 85.63 0.35 1.80 16 20 N -0.62 -10.75 2.50 -726.57 -1.81 -12.56 16 21 C 0.09 1.32 10.23 127.77 1.31 2.62 16 22 C 0.20 4.09 6.55 38.21 0.25 4.34 16 23 C -0.21 -4.00 9.20 22.40 0.21 -3.80 16 24 C -0.08 -1.41 10.04 22.25 0.22 -1.19 16 25 C -0.19 -3.12 10.04 22.29 0.22 -2.90 16 26 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 27 C -0.21 -3.93 9.21 22.40 0.21 -3.72 16 28 C 0.07 0.85 6.54 86.35 0.56 1.41 16 29 C 0.03 0.56 6.99 72.08 0.50 1.07 16 30 O -0.38 -10.57 9.24 -148.98 -1.38 -11.94 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.98 6.42 -2.39 -0.02 1.96 16 33 H 0.06 1.99 7.55 -2.38 -0.02 1.97 16 34 H 0.37 17.20 5.45 -92.71 -0.51 16.69 16 35 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 36 H 0.08 2.43 7.08 -2.39 -0.02 2.41 16 37 H 0.09 2.21 6.27 -2.39 -0.01 2.19 16 38 H 0.13 1.10 6.08 -2.39 -0.01 1.08 16 39 H 0.14 0.90 7.41 -2.39 -0.02 0.88 16 40 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.08 0.95 6.20 -2.39 -0.01 0.94 16 42 H 0.09 0.83 7.89 -2.38 -0.02 0.82 16 43 H 0.12 2.00 6.15 -2.91 -0.02 1.98 16 44 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.13 2.05 6.14 -2.91 -0.02 2.03 16 48 H 0.13 0.44 6.05 -2.39 -0.01 0.43 16 49 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -82.49 401.03 2.73 -79.77 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.38 Total: 28.87 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 7.44 Total: 2.53 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.56 Total: -128.60 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.43 Total: -31.05 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.90 Total: 48.49 kcal Total: -82.49 2.73 -79.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485651673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.804 kcal (2) G-P(sol) polarization free energy of solvation -82.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds