Wall clock time and date at job start Wed Apr 1 2020 04:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 5 5 C 1.36935 * 119.99926 * 85.00376 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 14 14 H 1.09001 * 109.51177 * 299.99547 * 13 2 1 15 15 C 1.53302 * 109.51193 * 179.89725 * 13 2 1 16 16 N 1.47151 * 108.38418 * 187.77523 * 15 13 2 17 17 C 1.34778 * 120.97968 * 230.51396 * 16 15 13 18 18 O 1.21277 * 120.00047 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99899 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46871 * 179.97438 * 19 17 16 21 21 C 1.46497 * 120.00043 * 90.00302 * 20 19 17 22 22 C 1.39671 * 119.99927 * 269.99819 * 20 19 17 23 23 C 1.38919 * 120.07466 * 359.72614 * 22 20 19 24 24 C 1.38109 * 119.92089 * 179.76514 * 23 22 20 25 25 C 1.38284 * 120.07548 * 0.51406 * 24 23 22 26 26 C 1.38284 * 120.15098 * 359.73785 * 25 24 23 27 27 C 1.38100 * 120.07552 * 0.02562 * 26 25 24 28 28 C 1.47148 * 118.03979 * 50.53194 * 16 15 13 29 29 C 1.53296 * 108.38410 * 309.46762 * 28 16 15 30 30 O 1.42958 * 109.51278 * 60.10260 * 13 2 1 31 31 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 33 33 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 34 34 H 0.97005 * 120.00261 * 265.00500 * 4 2 1 35 35 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.68091 * 307.49501 * 15 13 2 37 37 H 1.08997 * 109.68241 * 68.01262 * 15 13 2 38 38 H 1.08999 * 109.47295 * 300.00115 * 19 17 16 39 39 H 1.09006 * 109.46826 * 60.00128 * 19 17 16 40 40 H 1.08997 * 109.47211 * 89.99484 * 21 20 19 41 41 H 1.08999 * 109.46945 * 209.99436 * 21 20 19 42 42 H 1.09001 * 109.46738 * 329.99705 * 21 20 19 43 43 H 1.07998 * 120.03526 * 0.02562 * 23 22 20 44 44 H 1.07994 * 119.95736 * 180.25255 * 24 23 22 45 45 H 1.07998 * 119.92412 * 179.76528 * 25 24 23 46 46 H 1.07995 * 119.96096 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.04171 * 180.02562 * 27 26 25 48 48 H 1.09004 * 109.67981 * 69.18677 * 28 16 15 49 49 H 1.08997 * 109.68485 * 189.74485 * 28 16 15 50 50 H 1.09005 * 109.51395 * 172.22101 * 29 28 16 51 51 H 1.08996 * 109.51596 * 292.32333 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6172 -0.6605 -3.5077 8 7 2.9357 -1.9361 -3.4472 9 14 2.7964 0.2715 -5.1166 10 1 3.7469 1.3976 -4.9331 11 1 3.3120 -0.6451 -6.1649 12 1 1.4730 0.8032 -5.5307 13 6 2.0399 -0.7213 1.2493 14 1 1.6770 -0.2080 2.1397 15 6 3.5729 -0.7241 1.2490 16 7 4.0356 -1.5798 2.3531 17 6 4.9527 -1.1374 3.2362 18 8 5.4095 -0.0192 3.1271 19 6 5.4105 -2.0322 4.3590 20 7 6.4023 -1.3253 5.1733 21 6 5.9703 -0.5204 6.3186 22 6 7.7596 -1.4189 4.8578 23 6 8.1715 -2.1864 3.7756 24 6 9.5141 -2.2728 3.4634 25 6 10.4488 -1.6050 4.2332 26 6 10.0428 -0.8444 5.3143 27 6 8.7015 -0.7497 5.6290 28 6 3.4679 -2.9327 2.4645 29 6 1.9401 -2.8223 2.4055 30 8 1.5658 -2.0700 1.2489 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6319 -1.1526 35 1 3.2631 -2.3924 -4.2381 36 1 3.9391 -1.1182 0.3009 37 1 3.9419 0.2915 1.3914 38 1 4.5562 -2.3024 4.9797 39 1 5.8584 -2.9353 3.9443 40 1 5.9483 -1.1433 7.2128 41 1 6.6678 0.3039 6.4671 42 1 4.9734 -0.1230 6.1280 43 1 7.4422 -2.7115 3.1765 44 1 9.8345 -2.8660 2.6198 45 1 11.4984 -1.6774 3.9892 46 1 10.7754 -0.3238 5.9130 47 1 8.3849 -0.1551 6.4733 48 1 3.8235 -3.5491 1.6388 49 1 3.7673 -3.3797 3.4124 50 1 1.5048 -3.8200 2.3474 51 1 1.5766 -2.3183 3.3010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485651674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:17 Heat of formation + Delta-G solvation = -11.885749 kcal Electronic energy + Delta-G solvation = -31370.722247 eV Core-core repulsion = 27271.360062 eV Total energy + Delta-G solvation = -4099.362185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.51338 -39.51532 -38.29262 -36.07454 -35.50179 -34.49898 -32.32267 -31.32743 -30.51443 -30.03555 -29.11533 -28.39611 -27.33113 -25.31378 -24.05275 -23.49178 -22.65086 -22.13428 -21.01861 -19.73971 -19.12106 -17.89924 -17.51674 -17.22978 -16.47175 -16.05363 -15.75302 -15.47785 -15.27238 -14.94578 -14.72117 -14.47524 -14.39802 -14.14812 -13.80614 -13.65096 -13.42284 -13.37820 -13.18079 -12.98723 -12.69588 -12.40413 -12.25050 -12.07887 -11.93100 -11.84027 -11.50447 -11.38145 -11.18561 -10.92397 -10.82603 -10.77529 -10.49598 -10.39613 -10.28739 -10.00873 -9.88928 -9.57797 -9.54025 -8.98140 -8.90774 -8.37748 -7.44839 -6.91686 -5.72762 -3.01147 1.38051 1.53732 2.59520 2.64931 3.11466 3.46695 3.51315 3.51821 3.84354 3.95260 4.39246 4.60544 4.61937 4.70454 4.79038 4.80224 4.92819 4.97078 5.03723 5.07652 5.15984 5.26771 5.31086 5.36754 5.39365 5.42721 5.46744 5.56258 5.61744 5.64239 5.67674 5.76913 5.85111 5.92028 6.00491 6.14592 6.21209 6.35135 6.40641 6.41562 6.55597 6.57551 6.66394 6.74942 6.78179 6.99205 7.13112 7.31177 7.41383 7.45911 7.72898 8.17849 8.45578 9.57842 10.14556 10.51910 11.49439 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.002748 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.922832 B =10185.359914 C =11599.351171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.059 0.941 4 N -0.716 5.716 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.079 3.921 14 H 0.053 0.947 15 C 0.086 3.914 16 N -0.613 5.613 17 C 0.488 3.512 18 O -0.526 6.526 19 C 0.107 3.893 20 N -0.613 5.613 21 C 0.099 3.901 22 C 0.223 3.777 23 C -0.193 4.193 24 C -0.071 4.071 25 C -0.181 4.181 26 C -0.075 4.075 27 C -0.195 4.195 28 C 0.070 3.930 29 C 0.048 3.952 30 O -0.358 6.358 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.390 0.610 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.103 0.897 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 -3.740 23.003 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.359 5.359 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.020 3.980 14 H 0.071 0.929 15 C -0.036 4.036 16 N -0.348 5.348 17 C 0.273 3.727 18 O -0.401 6.401 19 C -0.021 4.021 20 N -0.323 5.323 21 C -0.044 4.044 22 C 0.122 3.878 23 C -0.215 4.215 24 C -0.090 4.090 25 C -0.201 4.201 26 C -0.094 4.094 27 C -0.217 4.217 28 C -0.053 4.053 29 C -0.030 4.030 30 O -0.275 6.275 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.225 0.775 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.102 0.898 49 H 0.104 0.896 50 H 0.121 0.879 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.423 -3.070 22.716 23.805 hybrid contribution 0.147 0.220 -0.851 0.891 sum 6.570 -2.849 21.865 23.008 Atomic orbital electron populations 1.22353 0.98537 1.01539 0.99611 1.20255 0.92746 0.94633 0.85222 0.92317 1.42364 1.77685 1.10977 1.04868 1.19193 1.36537 0.93835 0.87503 0.91308 1.24709 1.02138 0.95952 0.97951 1.69659 1.50544 1.08742 1.28936 0.86305 0.77732 0.78640 0.83725 1.21311 1.21772 1.21348 1.22911 0.92288 0.83299 0.99508 0.92897 1.22417 0.94795 0.96533 0.89816 1.48310 1.41756 1.15497 1.29281 1.21412 0.79217 0.88643 0.83383 1.90713 1.55232 1.20385 1.73807 1.21331 0.93427 0.94950 0.92365 1.45934 1.02224 1.53525 1.30651 1.21612 1.00756 0.94844 0.87214 1.17775 0.83186 0.93516 0.93281 1.20665 0.96622 1.04817 0.99406 1.20898 0.92373 0.97545 0.98178 1.20896 0.99273 1.01994 0.97945 1.20859 0.94928 0.97115 0.96465 1.20637 0.92736 1.05282 1.03092 1.22499 0.95658 0.84123 1.03068 1.22873 0.92866 0.97614 0.89643 1.88118 1.75082 1.23650 1.40696 0.92548 0.94919 0.92744 0.77527 0.93556 0.88504 0.88775 0.87928 0.87730 0.93225 0.91150 0.91671 0.86534 0.86190 0.86581 0.86348 0.86135 0.89786 0.89635 0.87890 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.35 37.15 0.35 -2.61 16 2 C 0.18 3.62 2.73 -67.93 -0.19 3.43 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -17.66 4.29 -53.43 -0.23 -17.89 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 9 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 C 0.08 1.33 2.53 -26.57 -0.07 1.26 16 14 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 15 C 0.09 1.51 5.86 -3.53 -0.02 1.48 16 16 N -0.61 -8.60 3.02 -172.28 -0.52 -9.12 16 17 C 0.49 6.93 7.78 -10.98 -0.09 6.84 16 18 O -0.53 -9.76 15.90 5.56 0.09 -9.67 16 19 C 0.11 1.06 4.02 -5.19 -0.02 1.04 16 20 N -0.61 -6.75 2.50 -181.00 -0.45 -7.20 16 21 C 0.10 0.85 10.19 59.85 0.61 1.46 16 22 C 0.22 2.74 6.55 -83.78 -0.55 2.19 16 23 C -0.19 -2.40 9.21 -39.38 -0.36 -2.76 16 24 C -0.07 -0.82 10.04 -39.61 -0.40 -1.21 16 25 C -0.18 -1.93 10.04 -39.55 -0.40 -2.33 16 26 C -0.07 -0.78 10.04 -39.61 -0.40 -1.17 16 27 C -0.20 -2.18 9.21 -39.38 -0.36 -2.54 16 28 C 0.07 0.74 6.54 -3.54 -0.02 0.72 16 29 C 0.05 0.54 6.98 37.31 0.26 0.81 16 30 O -0.36 -5.87 9.22 -35.23 -0.32 -6.20 16 31 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.39 10.35 7.20 -40.82 -0.29 10.06 16 35 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.10 2.01 7.27 -51.93 -0.38 1.63 16 37 H 0.09 1.76 7.08 -51.93 -0.37 1.40 16 38 H 0.10 0.72 7.59 -51.93 -0.39 0.32 16 39 H 0.10 0.90 6.06 -51.93 -0.31 0.59 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.60 6.20 -51.93 -0.32 0.28 16 42 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 43 H 0.12 1.38 6.14 -52.49 -0.32 1.06 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.12 6.14 -52.49 -0.32 0.80 16 48 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.09 0.57 6.05 -51.93 -0.31 0.26 16 50 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -34.40 406.23 -9.55 -43.95 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.04 Total: 10.28 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.90 Total: -0.53 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.48 Total: -61.46 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.24 Total: -15.87 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.40 -9.55 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485651674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.063 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds