Wall clock time and date at job start Wed Apr 1 2020 04:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 5 5 C 1.36935 * 119.99926 * 85.00376 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 14 14 H 1.09001 * 109.51177 * 299.99547 * 13 2 1 15 15 C 1.53302 * 109.51193 * 179.89725 * 13 2 1 16 16 N 1.47151 * 108.38418 * 187.77523 * 15 13 2 17 17 C 1.34778 * 120.97968 * 230.51396 * 16 15 13 18 18 O 1.21277 * 120.00047 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99899 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46871 * 179.97438 * 19 17 16 21 21 C 1.46497 * 120.00043 * 90.00302 * 20 19 17 22 22 C 1.39671 * 119.99927 * 269.99819 * 20 19 17 23 23 C 1.38919 * 120.07466 * 359.72614 * 22 20 19 24 24 C 1.38109 * 119.92089 * 179.76514 * 23 22 20 25 25 C 1.38284 * 120.07548 * 0.51406 * 24 23 22 26 26 C 1.38284 * 120.15098 * 359.73785 * 25 24 23 27 27 C 1.38100 * 120.07552 * 0.02562 * 26 25 24 28 28 C 1.47148 * 118.03979 * 50.53194 * 16 15 13 29 29 C 1.53296 * 108.38410 * 309.46762 * 28 16 15 30 30 O 1.42958 * 109.51278 * 60.10260 * 13 2 1 31 31 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 33 33 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 34 34 H 0.97005 * 120.00261 * 265.00500 * 4 2 1 35 35 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.68091 * 307.49501 * 15 13 2 37 37 H 1.08997 * 109.68241 * 68.01262 * 15 13 2 38 38 H 1.08999 * 109.47295 * 300.00115 * 19 17 16 39 39 H 1.09006 * 109.46826 * 60.00128 * 19 17 16 40 40 H 1.08997 * 109.47211 * 89.99484 * 21 20 19 41 41 H 1.08999 * 109.46945 * 209.99436 * 21 20 19 42 42 H 1.09001 * 109.46738 * 329.99705 * 21 20 19 43 43 H 1.07998 * 120.03526 * 0.02562 * 23 22 20 44 44 H 1.07994 * 119.95736 * 180.25255 * 24 23 22 45 45 H 1.07998 * 119.92412 * 179.76528 * 25 24 23 46 46 H 1.07995 * 119.96096 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.04171 * 180.02562 * 27 26 25 48 48 H 1.09004 * 109.67981 * 69.18677 * 28 16 15 49 49 H 1.08997 * 109.68485 * 189.74485 * 28 16 15 50 50 H 1.09005 * 109.51395 * 172.22101 * 29 28 16 51 51 H 1.08996 * 109.51596 * 292.32333 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6172 -0.6605 -3.5077 8 7 2.9357 -1.9361 -3.4472 9 14 2.7964 0.2715 -5.1166 10 1 3.7469 1.3976 -4.9331 11 1 3.3120 -0.6451 -6.1649 12 1 1.4730 0.8032 -5.5307 13 6 2.0399 -0.7213 1.2493 14 1 1.6770 -0.2080 2.1397 15 6 3.5729 -0.7241 1.2490 16 7 4.0356 -1.5798 2.3531 17 6 4.9527 -1.1374 3.2362 18 8 5.4095 -0.0192 3.1271 19 6 5.4105 -2.0322 4.3590 20 7 6.4023 -1.3253 5.1733 21 6 5.9703 -0.5204 6.3186 22 6 7.7596 -1.4189 4.8578 23 6 8.1715 -2.1864 3.7756 24 6 9.5141 -2.2728 3.4634 25 6 10.4488 -1.6050 4.2332 26 6 10.0428 -0.8444 5.3143 27 6 8.7015 -0.7497 5.6290 28 6 3.4679 -2.9327 2.4645 29 6 1.9401 -2.8223 2.4055 30 8 1.5658 -2.0700 1.2489 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6319 -1.1526 35 1 3.2631 -2.3924 -4.2381 36 1 3.9391 -1.1182 0.3009 37 1 3.9419 0.2915 1.3914 38 1 4.5562 -2.3024 4.9797 39 1 5.8584 -2.9353 3.9443 40 1 5.9483 -1.1433 7.2128 41 1 6.6678 0.3039 6.4671 42 1 4.9734 -0.1230 6.1280 43 1 7.4422 -2.7115 3.1765 44 1 9.8345 -2.8660 2.6198 45 1 11.4984 -1.6774 3.9892 46 1 10.7754 -0.3238 5.9130 47 1 8.3849 -0.1551 6.4733 48 1 3.8235 -3.5491 1.6388 49 1 3.7673 -3.3797 3.4124 50 1 1.5048 -3.8200 2.3474 51 1 1.5766 -2.3183 3.3010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485651674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:16 Heat of formation + Delta-G solvation = -33.706245 kcal Electronic energy + Delta-G solvation = -31371.668454 eV Core-core repulsion = 27271.360062 eV Total energy + Delta-G solvation = -4100.308392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59064 -40.45157 -39.45242 -37.11085 -36.88835 -35.75951 -34.18201 -32.22657 -31.75878 -30.99179 -30.19451 -29.91333 -28.42242 -26.27527 -25.71687 -24.87005 -23.71914 -23.07300 -21.92418 -21.24225 -20.18099 -19.32874 -18.72846 -18.44493 -17.65448 -17.22039 -16.78122 -16.51319 -16.31740 -16.23589 -15.99800 -15.86831 -15.39016 -15.18746 -15.10927 -14.77205 -14.65254 -14.48010 -14.27149 -14.17373 -13.98476 -13.49521 -13.45370 -13.12088 -13.03483 -12.89207 -12.87227 -12.74319 -12.51056 -12.49832 -12.28484 -12.23659 -11.80458 -11.71734 -11.69124 -11.54674 -11.26678 -11.04738 -10.94389 -10.57544 -9.82049 -9.59616 -8.95555 -8.26318 -7.90698 -5.17718 0.54129 0.69430 1.46502 1.49068 1.51960 1.54663 1.71472 2.21946 2.56985 2.81403 3.00104 3.42855 3.45596 3.70961 3.86266 3.92955 3.96722 3.97177 4.05276 4.07755 4.17897 4.23906 4.28204 4.34769 4.35525 4.40528 4.51010 4.62163 4.62337 4.63281 4.72591 4.78382 4.82601 4.85254 4.86977 4.90234 5.02522 5.08483 5.14484 5.19893 5.29744 5.35000 5.52293 5.59846 5.60671 5.74978 5.95523 6.17416 6.27391 6.33343 6.38492 6.51250 7.08390 7.38202 8.14376 8.39937 9.32302 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.002748 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.922832 B =10185.359914 C =11599.351171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.171 3.829 3 H 0.054 0.946 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.073 0.927 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.278 1.278 13 C 0.097 3.903 14 H 0.076 0.924 15 C 0.096 3.904 16 N -0.612 5.612 17 C 0.485 3.515 18 O -0.578 6.578 19 C 0.112 3.888 20 N -0.619 5.619 21 C 0.095 3.905 22 C 0.206 3.794 23 C -0.216 4.216 24 C -0.086 4.086 25 C -0.191 4.191 26 C -0.079 4.079 27 C -0.207 4.207 28 C 0.068 3.932 29 C 0.041 3.959 30 O -0.385 6.385 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.378 0.622 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.143 0.857 47 H 0.136 0.864 48 H 0.071 0.929 49 H 0.135 0.865 50 H 0.129 0.871 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 -4.080 25.659 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.062 3.938 3 H 0.072 0.928 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.796 3.204 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.205 1.205 13 C 0.037 3.963 14 H 0.094 0.906 15 C -0.027 4.027 16 N -0.346 5.346 17 C 0.273 3.727 18 O -0.457 6.457 19 C -0.015 4.015 20 N -0.329 5.329 21 C -0.047 4.047 22 C 0.104 3.896 23 C -0.238 4.238 24 C -0.105 4.105 25 C -0.210 4.210 26 C -0.098 4.098 27 C -0.229 4.229 28 C -0.054 4.054 29 C -0.036 4.036 30 O -0.304 6.304 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.211 0.789 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.161 0.839 47 H 0.154 0.846 48 H 0.089 0.911 49 H 0.153 0.847 50 H 0.146 0.854 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.980 -3.405 25.426 26.341 hybrid contribution 0.292 0.342 -1.575 1.638 sum 6.273 -3.063 23.851 24.851 Atomic orbital electron populations 1.22164 0.96885 1.01186 1.00494 1.20505 0.93762 0.94473 0.85023 0.92793 1.42460 1.78030 1.10461 1.05668 1.19572 1.34694 0.94101 0.88540 0.90904 1.25460 1.03139 0.96864 1.01157 1.69815 1.52409 1.10201 1.29288 0.85309 0.77851 0.77317 0.79875 1.20840 1.22296 1.20457 1.22548 0.91242 0.84097 0.98377 0.90594 1.21966 0.95542 0.95810 0.89413 1.48390 1.41840 1.16344 1.28057 1.22349 0.78037 0.88516 0.83827 1.90687 1.56854 1.22909 1.75203 1.21514 0.94703 0.93969 0.91315 1.46146 1.01899 1.53796 1.31012 1.21758 1.00476 0.95089 0.87399 1.18027 0.84211 0.93797 0.93522 1.20816 0.97122 1.05795 1.00060 1.21158 0.92469 0.98020 0.98813 1.21203 1.00164 1.01745 0.97927 1.21224 0.95323 0.96745 0.96460 1.20936 0.93039 1.05317 1.03563 1.22759 0.95263 0.82134 1.05241 1.23241 0.93260 0.98414 0.88685 1.88070 1.75372 1.23372 1.43541 0.93432 0.91398 0.94414 0.78947 0.94243 0.92810 0.90897 0.83817 0.86197 0.90664 0.91583 0.91690 0.86761 0.85219 0.84732 0.83892 0.84621 0.91050 0.84700 0.85360 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.35 71.98 0.67 -4.64 16 2 C 0.17 6.85 2.73 44.99 0.12 6.98 16 3 H 0.05 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.73 -36.82 4.29 -322.94 -1.38 -38.21 16 5 C -0.24 -13.32 9.93 84.03 0.83 -12.49 16 6 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 7 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 8 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 9 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.10 3.20 2.53 30.70 0.08 3.28 16 14 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.10 3.47 5.86 86.36 0.51 3.98 16 16 N -0.61 -16.72 3.02 -817.35 -2.47 -19.19 16 17 C 0.48 13.34 7.78 87.66 0.68 14.03 16 18 O -0.58 -21.78 15.90 -3.02 -0.05 -21.83 16 19 C 0.11 1.94 4.02 85.63 0.34 2.28 16 20 N -0.62 -12.46 2.50 -726.55 -1.81 -14.28 16 21 C 0.09 1.43 10.19 127.77 1.30 2.73 16 22 C 0.21 4.86 6.55 38.22 0.25 5.11 16 23 C -0.22 -5.31 9.21 22.40 0.21 -5.10 16 24 C -0.09 -1.95 10.04 22.25 0.22 -1.73 16 25 C -0.19 -3.87 10.04 22.29 0.22 -3.65 16 26 C -0.08 -1.52 10.04 22.25 0.22 -1.30 16 27 C -0.21 -4.35 9.21 22.40 0.21 -4.14 16 28 C 0.07 1.28 6.54 86.35 0.56 1.84 16 29 C 0.04 0.80 6.98 72.08 0.50 1.31 16 30 O -0.38 -12.21 9.22 -148.98 -1.37 -13.59 16 31 H 0.05 1.79 7.69 -2.39 -0.02 1.77 16 32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.38 20.87 7.20 -92.70 -0.67 20.21 16 35 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.05 2.39 7.27 -2.39 -0.02 2.37 16 37 H 0.07 2.89 7.08 -2.39 -0.02 2.87 16 38 H 0.14 1.30 7.59 -2.39 -0.02 1.29 16 39 H 0.12 1.74 6.06 -2.38 -0.01 1.73 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.03 6.20 -2.39 -0.01 1.02 16 42 H 0.06 0.97 8.07 -2.39 -0.02 0.96 16 43 H 0.11 2.71 6.14 -2.91 -0.02 2.69 16 44 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 46 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 47 H 0.14 2.31 6.14 -2.91 -0.02 2.29 16 48 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.14 1.19 6.05 -2.39 -0.01 1.18 16 50 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 51 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -78.71 406.23 2.90 -75.81 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.26 Total: 37.00 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 7.41 Total: 4.65 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.38 Total: -131.32 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.42 Total: -35.42 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -78.71 2.90 -75.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485651674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.106 kcal (2) G-P(sol) polarization free energy of solvation -78.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds