Wall clock time and date at job start Wed Apr 1 2020 04:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47467 * 2 1 4 4 N 1.46508 * 109.46836 * 240.00961 * 2 1 3 5 5 C 1.36934 * 120.00226 * 84.99790 * 4 2 1 6 6 H 1.07998 * 120.00224 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99637 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00638 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99725 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46989 * 60.00312 * 9 7 5 11 11 H 1.48497 * 109.47511 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47443 * 300.00277 * 9 7 5 13 13 C 1.52994 * 109.47820 * 120.00708 * 2 1 3 14 14 H 1.09006 * 109.52279 * 60.07659 * 13 2 1 15 15 C 1.53042 * 109.49646 * 299.99982 * 13 2 1 16 16 C 1.53035 * 109.54021 * 178.67720 * 15 13 2 17 17 C 1.53196 * 109.30995 * 61.36728 * 16 15 13 18 18 N 1.46929 * 108.77486 * 305.36045 * 17 16 15 19 19 C 1.34775 * 120.63328 * 233.60825 * 18 17 16 20 20 O 1.21281 * 119.99736 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99881 * 0.02562 * 19 18 17 22 22 C 1.53002 * 109.47042 * 179.97438 * 21 19 18 23 23 C 1.50702 * 109.47256 * 179.97438 * 22 21 19 24 24 C 1.38822 * 120.35368 * 89.99801 * 23 22 21 25 25 C 1.38380 * 118.48661 * 179.97438 * 24 23 22 26 26 C 1.38916 * 119.10972 * 359.97438 * 25 24 23 27 27 O 1.35680 * 119.68802 * 180.02562 * 26 25 24 28 28 N 1.32248 * 120.63127 * 0.02562 * 26 25 24 29 29 C 1.31964 * 121.64522 * 359.68375 * 28 26 25 30 30 C 1.46924 * 118.73409 * 53.61317 * 18 17 16 31 31 H 1.09001 * 109.47837 * 59.99249 * 1 2 3 32 32 H 1.09007 * 109.47393 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47138 * 299.99405 * 1 2 3 34 34 H 0.97005 * 119.99584 * 264.99431 * 4 2 1 35 35 H 0.96994 * 120.00069 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46156 * 58.65715 * 15 13 2 37 37 H 1.09003 * 109.44815 * 298.69709 * 15 13 2 38 38 H 1.09001 * 109.49969 * 301.41757 * 16 15 13 39 39 H 1.08996 * 109.52938 * 181.33098 * 16 15 13 40 40 H 1.08998 * 109.58804 * 65.15483 * 17 16 15 41 41 H 1.09003 * 109.58394 * 185.58059 * 17 16 15 42 42 H 1.09006 * 109.46697 * 299.99443 * 21 19 18 43 43 H 1.08999 * 109.47275 * 59.99614 * 21 19 18 44 44 H 1.09002 * 109.46722 * 299.99767 * 22 21 19 45 45 H 1.09004 * 109.46905 * 59.99632 * 22 21 19 46 46 H 1.07997 * 120.76120 * 359.95418 * 24 23 22 47 47 H 1.08003 * 120.44740 * 180.02562 * 25 24 23 48 48 H 0.96696 * 113.99972 * 90.00081 * 27 26 25 49 49 H 1.08002 * 119.58226 * 180.30982 * 29 28 26 50 50 H 1.08999 * 109.58511 * 186.60055 * 30 18 17 51 51 H 1.09005 * 109.70744 * 66.24599 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1964 5 6 2.1489 -0.0072 -2.3758 6 1 1.8917 1.0406 -2.4243 7 6 2.6121 -0.6614 -3.5092 8 7 2.9251 -1.9384 -3.4503 9 14 2.7897 0.2705 -5.1184 10 1 3.7443 1.3937 -4.9372 11 1 3.2988 -0.6477 -6.1686 12 1 1.4670 0.8063 -5.5288 13 6 2.0401 -0.7213 1.2490 14 1 1.6784 -1.7496 1.2491 15 6 1.5303 -0.0005 2.4992 16 6 2.0127 -0.7402 3.7490 17 6 3.5444 -0.7372 3.7799 18 7 4.0440 -1.2973 2.5168 19 6 4.9186 -2.3228 2.5186 20 8 5.3238 -2.7759 1.4691 21 6 5.3929 -2.9062 3.8246 22 6 6.3717 -4.0490 3.5470 23 6 6.8465 -4.6321 4.8530 24 6 6.1559 -5.6806 5.4455 25 6 6.6263 -6.1868 6.6443 26 6 7.7672 -5.6324 7.2109 27 8 8.2390 -6.1201 8.3858 28 7 8.3979 -4.6339 6.6159 29 6 7.9766 -4.1338 5.4696 30 6 3.5720 -0.7182 1.2517 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.2490 -1.6317 -1.1529 35 1 3.2491 -2.3954 -4.2421 36 1 0.4406 0.0202 2.4874 37 1 1.9128 1.0201 2.5109 38 1 1.6513 -1.7683 3.7255 39 1 1.6300 -0.2403 4.6387 40 1 3.9055 0.2847 3.8948 41 1 3.8942 -1.3465 4.6134 42 1 5.8927 -2.1328 4.4078 43 1 4.5385 -3.2878 4.3837 44 1 5.8714 -4.8222 2.9640 45 1 7.2261 -3.6677 2.9877 46 1 5.2716 -6.0916 4.9815 47 1 6.1139 -7.0025 7.1327 48 1 8.8762 -6.8404 8.2852 49 1 8.5202 -3.3214 5.0104 50 1 3.9400 -1.3147 0.4170 51 1 3.9354 0.3052 1.1577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496450635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:59 Heat of formation + Delta-G solvation = -41.952959 kcal Electronic energy + Delta-G solvation = -30319.107559 eV Core-core repulsion = 26218.441563 eV Total energy + Delta-G solvation = -4100.665997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.88015 -40.10636 -37.99697 -37.50978 -35.43013 -34.37838 -32.95794 -32.44570 -31.74736 -30.30798 -29.36591 -28.13370 -25.74746 -24.85011 -24.09018 -23.62691 -22.94608 -21.92149 -20.93723 -19.55741 -19.19754 -18.74075 -17.38451 -17.28165 -16.95127 -16.35732 -15.76549 -15.61610 -15.29686 -14.85395 -14.63027 -14.46262 -14.21749 -13.81019 -13.67754 -13.64698 -13.46992 -13.32562 -13.04502 -12.80033 -12.64178 -12.39208 -12.21706 -12.19660 -11.99869 -11.90084 -11.33027 -11.28988 -11.08248 -10.98545 -10.82957 -10.69463 -10.58041 -10.27079 -10.23281 -10.14811 -9.85873 -9.77715 -9.59003 -9.49528 -9.08960 -8.86470 -8.42089 -6.90050 -5.69432 -2.98743 0.59399 0.84737 2.77358 3.05267 3.14588 3.46461 3.47365 3.51650 3.53031 4.24172 4.33920 4.55608 4.58958 4.61484 4.67607 4.72266 4.87086 4.90138 4.92759 5.01753 5.09383 5.24693 5.26334 5.31049 5.37382 5.49390 5.56925 5.61044 5.61958 5.70887 5.79544 5.82453 5.88826 5.93466 5.99146 6.02456 6.12604 6.16586 6.20629 6.23358 6.45000 6.49892 6.53965 6.74005 6.77384 6.93559 7.08192 7.11994 7.54768 7.57730 7.74663 8.34925 8.48132 9.59156 10.17025 10.51436 11.52658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.002116 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.370807 B =13228.085692 C =14509.273803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.612 5.612 19 C 0.508 3.492 20 O -0.529 6.529 21 C -0.133 4.133 22 C -0.062 4.062 23 C -0.138 4.138 24 C -0.057 4.057 25 C -0.182 4.182 26 C 0.300 3.700 27 O -0.485 6.485 28 N -0.502 5.502 29 C 0.127 3.873 30 C 0.122 3.878 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.399 0.601 49 H 0.161 0.839 50 H 0.107 0.893 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -5.072 24.558 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.370 4.370 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.017 4.017 18 N -0.346 5.346 19 C 0.295 3.705 20 O -0.405 6.405 21 C -0.173 4.173 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.082 4.082 25 C -0.204 4.204 26 C 0.121 3.879 27 O -0.292 6.292 28 N -0.220 5.220 29 C -0.030 4.030 30 C 0.000 4.000 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.257 0.743 49 H 0.179 0.821 50 H 0.125 0.875 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.309 -4.489 24.534 25.500 hybrid contribution -0.420 -0.483 -1.312 1.460 sum 4.889 -4.972 23.222 24.246 Atomic orbital electron populations 1.22482 0.99359 1.00764 0.99851 1.20174 0.91798 0.95257 0.85849 0.93567 1.42438 1.78084 1.10730 1.05252 1.19143 1.36766 0.93756 0.87376 0.91364 1.24735 1.02218 0.95945 0.97970 1.69654 1.50571 1.08591 1.28904 0.86316 0.77659 0.78627 0.83839 1.21338 1.21771 1.21421 1.21753 0.94818 1.00402 0.95267 0.91280 1.21628 1.01037 0.99063 0.93578 1.21919 0.94951 1.01535 0.98820 1.21733 0.94764 0.99217 0.86007 1.48221 1.44441 1.34154 1.07761 1.20551 0.79042 0.79666 0.91197 1.90785 1.56335 1.59915 1.33492 1.21674 1.00421 0.98903 0.96309 1.20292 0.99806 0.97563 0.92417 1.20996 0.96743 0.97581 0.98681 1.21507 0.98803 0.94212 0.93725 1.22121 0.98886 1.02620 0.96727 1.19204 0.91388 0.91416 0.85869 1.84782 1.63781 1.55622 1.24975 1.67183 1.33555 1.11450 1.09824 1.22500 0.93412 0.97779 0.89306 1.21686 0.93774 0.98941 0.85557 0.92906 0.93646 0.94317 0.78196 0.93496 0.91239 0.91892 0.91639 0.91056 0.91426 0.90242 0.88966 0.89015 0.89510 0.89423 0.84088 0.84189 0.74322 0.82135 0.87501 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.14 37.15 0.34 -2.55 16 2 C 0.18 3.44 2.47 -67.93 -0.17 3.27 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.91 4.52 -53.43 -0.24 -18.15 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 9 Si 0.90 22.69 29.55 -169.99 -5.02 17.67 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C -0.10 -1.62 1.97 -90.50 -0.18 -1.80 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.12 -1.36 4.85 -26.69 -0.13 -1.49 16 16 C -0.13 -1.25 6.08 -26.61 -0.16 -1.42 16 17 C 0.11 1.00 6.34 -3.71 -0.02 0.97 16 18 N -0.61 -8.25 2.97 -172.76 -0.51 -8.76 16 19 C 0.51 7.20 7.70 -10.99 -0.08 7.12 16 20 O -0.53 -10.13 15.40 5.56 0.09 -10.05 16 21 C -0.13 -1.22 4.03 -27.88 -0.11 -1.33 16 22 C -0.06 -0.58 4.66 -27.88 -0.13 -0.71 16 23 C -0.14 -1.15 5.15 -104.48 -0.54 -1.68 16 24 C -0.06 -0.42 9.85 -39.31 -0.39 -0.81 16 25 C -0.18 -1.37 10.04 -39.28 -0.39 -1.77 16 26 C 0.30 2.79 7.74 -17.12 -0.13 2.66 16 27 O -0.48 -3.88 13.56 -18.74 -0.25 -4.13 16 28 N -0.50 -5.34 10.39 -13.33 -0.14 -5.48 16 29 C 0.13 1.14 10.85 -17.57 -0.19 0.95 16 30 C 0.12 2.05 5.47 -3.71 -0.02 2.03 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 34 H 0.38 10.36 7.62 -40.82 -0.31 10.05 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 42 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 43 H 0.09 0.70 7.69 -51.93 -0.40 0.30 16 44 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 45 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 46 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 48 H 0.40 1.19 9.06 45.56 0.41 1.60 16 49 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 50 H 0.11 2.31 6.52 -51.93 -0.34 1.97 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -35.64 409.72 -9.22 -44.85 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.47 Total: 9.49 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.56 Total: -3.76 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.17 Total: -60.24 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.17 Total: -14.18 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.64 -9.22 -44.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.898 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds