Wall clock time and date at job start Wed Apr 1 2020 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47467 * 2 1 4 4 N 1.46508 * 109.46836 * 240.00961 * 2 1 3 5 5 C 1.36934 * 120.00226 * 84.99790 * 4 2 1 6 6 H 1.07998 * 120.00224 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99637 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00638 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99725 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46989 * 60.00312 * 9 7 5 11 11 H 1.48497 * 109.47511 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47443 * 300.00277 * 9 7 5 13 13 C 1.52994 * 109.47820 * 120.00708 * 2 1 3 14 14 H 1.09006 * 109.52279 * 60.07659 * 13 2 1 15 15 C 1.53042 * 109.49646 * 299.99982 * 13 2 1 16 16 C 1.53035 * 109.54021 * 178.67720 * 15 13 2 17 17 C 1.53196 * 109.30995 * 61.36728 * 16 15 13 18 18 N 1.46929 * 108.77486 * 305.36045 * 17 16 15 19 19 C 1.34775 * 120.63328 * 233.60825 * 18 17 16 20 20 O 1.21281 * 119.99736 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99881 * 0.02562 * 19 18 17 22 22 C 1.53002 * 109.47042 * 179.97438 * 21 19 18 23 23 C 1.50702 * 109.47256 * 179.97438 * 22 21 19 24 24 C 1.38822 * 120.35368 * 89.99801 * 23 22 21 25 25 C 1.38380 * 118.48661 * 179.97438 * 24 23 22 26 26 C 1.38916 * 119.10972 * 359.97438 * 25 24 23 27 27 O 1.35680 * 119.68802 * 180.02562 * 26 25 24 28 28 N 1.32248 * 120.63127 * 0.02562 * 26 25 24 29 29 C 1.31964 * 121.64522 * 359.68375 * 28 26 25 30 30 C 1.46924 * 118.73409 * 53.61317 * 18 17 16 31 31 H 1.09001 * 109.47837 * 59.99249 * 1 2 3 32 32 H 1.09007 * 109.47393 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47138 * 299.99405 * 1 2 3 34 34 H 0.97005 * 119.99584 * 264.99431 * 4 2 1 35 35 H 0.96994 * 120.00069 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46156 * 58.65715 * 15 13 2 37 37 H 1.09003 * 109.44815 * 298.69709 * 15 13 2 38 38 H 1.09001 * 109.49969 * 301.41757 * 16 15 13 39 39 H 1.08996 * 109.52938 * 181.33098 * 16 15 13 40 40 H 1.08998 * 109.58804 * 65.15483 * 17 16 15 41 41 H 1.09003 * 109.58394 * 185.58059 * 17 16 15 42 42 H 1.09006 * 109.46697 * 299.99443 * 21 19 18 43 43 H 1.08999 * 109.47275 * 59.99614 * 21 19 18 44 44 H 1.09002 * 109.46722 * 299.99767 * 22 21 19 45 45 H 1.09004 * 109.46905 * 59.99632 * 22 21 19 46 46 H 1.07997 * 120.76120 * 359.95418 * 24 23 22 47 47 H 1.08003 * 120.44740 * 180.02562 * 25 24 23 48 48 H 0.96696 * 113.99972 * 90.00081 * 27 26 25 49 49 H 1.08002 * 119.58226 * 180.30982 * 29 28 26 50 50 H 1.08999 * 109.58511 * 186.60055 * 30 18 17 51 51 H 1.09005 * 109.70744 * 66.24599 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1964 5 6 2.1489 -0.0072 -2.3758 6 1 1.8917 1.0406 -2.4243 7 6 2.6121 -0.6614 -3.5092 8 7 2.9251 -1.9384 -3.4503 9 14 2.7897 0.2705 -5.1184 10 1 3.7443 1.3937 -4.9372 11 1 3.2988 -0.6477 -6.1686 12 1 1.4670 0.8063 -5.5288 13 6 2.0401 -0.7213 1.2490 14 1 1.6784 -1.7496 1.2491 15 6 1.5303 -0.0005 2.4992 16 6 2.0127 -0.7402 3.7490 17 6 3.5444 -0.7372 3.7799 18 7 4.0440 -1.2973 2.5168 19 6 4.9186 -2.3228 2.5186 20 8 5.3238 -2.7759 1.4691 21 6 5.3929 -2.9062 3.8246 22 6 6.3717 -4.0490 3.5470 23 6 6.8465 -4.6321 4.8530 24 6 6.1559 -5.6806 5.4455 25 6 6.6263 -6.1868 6.6443 26 6 7.7672 -5.6324 7.2109 27 8 8.2390 -6.1201 8.3858 28 7 8.3979 -4.6339 6.6159 29 6 7.9766 -4.1338 5.4696 30 6 3.5720 -0.7182 1.2517 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.2490 -1.6317 -1.1529 35 1 3.2491 -2.3954 -4.2421 36 1 0.4406 0.0202 2.4874 37 1 1.9128 1.0201 2.5109 38 1 1.6513 -1.7683 3.7255 39 1 1.6300 -0.2403 4.6387 40 1 3.9055 0.2847 3.8948 41 1 3.8942 -1.3465 4.6134 42 1 5.8927 -2.1328 4.4078 43 1 4.5385 -3.2878 4.3837 44 1 5.8714 -4.8222 2.9640 45 1 7.2261 -3.6677 2.9877 46 1 5.2716 -6.0916 4.9815 47 1 6.1139 -7.0025 7.1327 48 1 8.8762 -6.8404 8.2852 49 1 8.5202 -3.3214 5.0104 50 1 3.9400 -1.3147 0.4170 51 1 3.9354 0.3052 1.1577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496450635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:58 Heat of formation + Delta-G solvation = -68.899695 kcal Electronic energy + Delta-G solvation = -30320.276058 eV Core-core repulsion = 26218.441563 eV Total energy + Delta-G solvation = -4101.834495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56897 -41.15145 -39.16739 -38.19879 -36.92493 -35.16630 -34.59615 -33.13733 -33.04224 -31.57046 -30.52377 -29.57537 -26.73932 -26.19218 -25.10773 -24.68623 -24.11823 -22.70608 -22.08017 -21.00615 -19.77975 -19.75721 -19.14301 -18.21124 -17.94091 -16.99162 -16.87957 -16.70674 -16.59475 -16.02166 -15.63466 -15.58072 -15.30516 -15.22709 -14.83327 -14.52468 -14.42222 -14.15829 -14.06826 -14.04896 -13.95805 -13.64276 -13.39992 -13.05087 -12.97071 -12.87916 -12.75063 -12.59172 -12.50036 -12.33937 -12.17143 -12.03104 -11.95471 -11.79087 -11.65398 -11.35175 -11.17389 -10.94460 -10.85703 -10.69910 -10.39496 -9.73529 -9.56156 -8.97644 -7.91011 -5.19278 -0.01558 0.25250 1.44621 1.48157 1.54050 1.68804 2.06446 2.54227 2.56742 2.85309 3.41901 3.46748 3.73406 3.75743 3.87345 3.90388 3.96258 3.98511 4.02430 4.14018 4.17564 4.25981 4.28778 4.35539 4.45907 4.49856 4.60526 4.62577 4.70536 4.75076 4.82194 4.88421 4.92221 4.96240 4.99046 5.03232 5.05585 5.08706 5.17249 5.20678 5.30325 5.34151 5.40640 5.50812 5.57267 5.58573 5.60642 5.66869 6.30022 6.52471 6.63644 6.94632 7.26422 7.35223 8.13810 8.35279 9.32234 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.002116 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.370807 B =13228.085692 C =14509.273803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.045 0.955 4 N -0.736 5.736 5 C -0.233 4.233 6 H 0.077 0.923 7 C -0.082 4.082 8 N -0.971 5.971 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.276 1.276 13 C -0.088 4.088 14 H 0.050 0.950 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.099 3.901 18 N -0.611 5.611 19 C 0.499 3.501 20 O -0.593 6.593 21 C -0.119 4.119 22 C -0.056 4.056 23 C -0.136 4.136 24 C -0.055 4.055 25 C -0.178 4.178 26 C 0.288 3.712 27 O -0.496 6.496 28 N -0.532 5.532 29 C 0.119 3.881 30 C 0.130 3.870 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.368 0.632 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.161 0.839 47 H 0.163 0.837 48 H 0.418 0.582 49 H 0.171 0.829 50 H 0.048 0.952 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -3.928 27.908 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.062 3.938 3 H 0.063 0.937 4 N -0.376 5.376 5 C -0.365 4.365 6 H 0.094 0.906 7 C -0.273 4.273 8 N -0.622 5.622 9 Si 0.799 3.201 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.203 1.203 13 C -0.109 4.109 14 H 0.069 0.931 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.022 4.022 18 N -0.343 5.343 19 C 0.289 3.711 20 O -0.473 6.473 21 C -0.158 4.158 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.080 4.080 25 C -0.199 4.199 26 C 0.110 3.890 27 O -0.306 6.306 28 N -0.251 5.251 29 C -0.037 4.037 30 C 0.006 3.994 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.199 0.801 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.178 0.822 47 H 0.181 0.819 48 H 0.279 0.721 49 H 0.188 0.812 50 H 0.067 0.933 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.038 -3.292 27.965 28.446 hybrid contribution -0.031 -0.822 -2.257 2.403 sum 4.007 -4.114 25.708 26.342 Atomic orbital electron populations 1.22319 0.97467 1.00556 1.00944 1.20491 0.92975 0.94965 0.85319 0.93683 1.42666 1.78378 1.10123 1.06442 1.19570 1.34503 0.94099 0.88329 0.90555 1.25567 1.03358 0.96862 1.01557 1.69842 1.52772 1.10353 1.29250 0.85257 0.77962 0.77260 0.79580 1.20480 1.22590 1.20258 1.21582 0.93822 0.99507 0.95947 0.93133 1.21620 1.01626 0.99256 0.92284 1.21920 0.94606 1.01396 0.98687 1.22130 0.95030 1.00548 0.84535 1.48332 1.44055 1.33856 1.08055 1.21532 0.78215 0.79147 0.92247 1.90762 1.58538 1.61858 1.36186 1.21680 1.01390 0.99262 0.93471 1.20149 0.99265 0.97309 0.92714 1.20826 0.96894 0.98132 0.98006 1.21763 0.99141 0.93545 0.93582 1.22321 0.98189 1.02844 0.96572 1.19481 0.91988 0.91442 0.86103 1.84728 1.64557 1.56549 1.24765 1.67180 1.34656 1.12586 1.10721 1.22683 0.93735 0.98178 0.89115 1.21273 0.94560 0.97577 0.85947 0.94848 0.94485 0.90099 0.80095 0.94364 0.90138 0.90883 0.92001 0.87364 0.89924 0.86891 0.86302 0.86284 0.90871 0.90802 0.82190 0.81948 0.72120 0.81195 0.93301 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.14 71.98 0.66 -4.56 16 2 C 0.17 6.58 2.47 44.99 0.11 6.69 16 3 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.74 -38.00 4.52 -322.95 -1.46 -39.46 16 5 C -0.23 -13.23 9.93 84.03 0.83 -12.39 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 8 N -0.97 -62.60 13.06 21.65 0.28 -62.32 16 9 Si 0.97 47.89 29.55 68.60 2.03 49.92 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 C -0.09 -2.78 1.97 -10.72 -0.02 -2.80 16 14 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 15 C -0.11 -2.24 4.85 30.62 0.15 -2.09 16 16 C -0.13 -1.83 6.08 30.67 0.19 -1.64 16 17 C 0.10 1.47 6.34 86.36 0.55 2.02 16 18 N -0.61 -16.00 2.97 -818.89 -2.43 -18.44 16 19 C 0.50 14.21 7.70 87.66 0.67 14.89 16 20 O -0.59 -24.31 15.40 -3.03 -0.05 -24.36 16 21 C -0.12 -1.93 4.03 29.85 0.12 -1.81 16 22 C -0.06 -1.00 4.66 29.85 0.14 -0.86 16 23 C -0.14 -2.06 5.15 -19.77 -0.10 -2.17 16 24 C -0.05 -0.69 9.85 22.44 0.22 -0.47 16 25 C -0.18 -2.27 10.04 22.47 0.23 -2.05 16 26 C 0.29 4.93 7.74 84.79 0.66 5.59 16 27 O -0.50 -7.21 13.56 -89.98 -1.22 -8.43 16 28 N -0.53 -10.78 10.39 -308.95 -3.21 -13.99 16 29 C 0.12 2.02 10.85 84.63 0.92 2.93 16 30 C 0.13 4.53 5.47 86.36 0.47 5.00 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.08 2.06 6.40 -2.39 -0.02 2.05 16 34 H 0.37 21.16 7.62 -92.70 -0.71 20.45 16 35 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.08 1.50 6.36 -2.38 -0.02 1.48 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 0.99 5.93 -2.39 -0.01 0.97 16 42 H 0.12 1.36 7.94 -2.38 -0.02 1.34 16 43 H 0.12 1.35 7.69 -2.39 -0.02 1.33 16 44 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 45 H 0.07 1.52 8.05 -2.38 -0.02 1.50 16 46 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 47 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 48 H 0.42 1.94 9.06 -74.06 -0.67 1.26 16 49 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 50 H 0.05 2.29 6.52 -2.39 -0.02 2.28 16 51 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -83.89 409.72 -0.23 -84.12 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.43 Total: 31.08 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.26 Total: 1.88 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -6.82 Total: -134.20 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.27 Total: -32.79 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -83.89 -0.23 -84.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.220 kcal (2) G-P(sol) polarization free energy of solvation -83.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds