Wall clock time and date at job start Wed Apr 1 2020 04:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47154 * 2 1 4 4 N 1.46504 * 109.46499 * 119.99079 * 2 1 3 5 5 C 1.36932 * 120.00393 * 274.99754 * 4 2 1 6 6 H 1.08004 * 119.99792 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00060 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99922 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46928 * 89.99834 * 9 7 5 11 11 H 1.48492 * 109.47512 * 209.99903 * 9 7 5 12 12 H 1.48501 * 109.47351 * 330.00315 * 9 7 5 13 13 C 1.52999 * 109.47362 * 239.99425 * 2 1 3 14 14 H 1.08998 * 109.52246 * 299.92066 * 13 2 1 15 15 C 1.53035 * 109.49569 * 59.99950 * 13 2 1 16 16 C 1.53044 * 109.53745 * 181.31383 * 15 13 2 17 17 C 1.53190 * 109.31247 * 298.63925 * 16 15 13 18 18 N 1.46923 * 108.77666 * 54.63326 * 17 16 15 19 19 C 1.34784 * 120.63216 * 126.36791 * 18 17 16 20 20 O 1.21274 * 119.99897 * 179.72777 * 19 18 17 21 21 C 1.50695 * 119.99635 * 359.97438 * 19 18 17 22 22 C 1.53002 * 109.47004 * 179.97438 * 21 19 18 23 23 C 1.50700 * 109.47331 * 180.02562 * 22 21 19 24 24 C 1.38825 * 120.35421 * 269.72664 * 23 22 21 25 25 C 1.38383 * 118.48427 * 179.73457 * 24 23 22 26 26 C 1.38919 * 119.10957 * 0.53835 * 25 24 23 27 27 O 1.35676 * 119.68390 * 179.75055 * 26 25 24 28 28 N 1.32251 * 120.63167 * 359.71958 * 26 25 24 29 29 C 1.31971 * 121.64426 * 0.02562 * 28 26 25 30 30 C 1.46927 * 118.74026 * 306.64450 * 18 17 16 31 31 H 1.08994 * 109.47360 * 300.00636 * 1 2 3 32 32 H 1.09004 * 109.46544 * 60.00639 * 1 2 3 33 33 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 34 34 H 0.97007 * 119.99250 * 95.00682 * 4 2 1 35 35 H 0.97003 * 119.99574 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46064 * 61.29762 * 15 13 2 37 37 H 1.08997 * 109.46778 * 301.34092 * 15 13 2 38 38 H 1.09000 * 109.49951 * 178.68518 * 16 15 13 39 39 H 1.09005 * 109.49454 * 58.59153 * 16 15 13 40 40 H 1.08997 * 109.59125 * 294.84367 * 17 16 15 41 41 H 1.08999 * 109.58528 * 174.41846 * 17 16 15 42 42 H 1.09005 * 109.47403 * 300.00056 * 21 19 18 43 43 H 1.09002 * 109.47422 * 60.00295 * 21 19 18 44 44 H 1.08997 * 109.47244 * 300.00535 * 22 21 19 45 45 H 1.09002 * 109.46787 * 59.99910 * 22 21 19 46 46 H 1.08003 * 120.76278 * 359.97418 * 24 23 22 47 47 H 1.07994 * 120.44508 * 180.23833 * 25 24 23 48 48 H 0.96704 * 113.99350 * 269.97212 * 27 26 25 49 49 H 1.07998 * 119.57951 * 179.97438 * 29 28 26 50 50 H 1.09000 * 109.58817 * 173.14754 * 30 18 17 51 51 H 1.09005 * 109.58520 * 293.56993 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1964 5 6 2.1490 -0.0072 2.3758 6 1 1.8919 1.0406 2.4243 7 6 2.6121 -0.6614 3.5092 8 7 2.7373 -0.0048 4.6430 9 14 3.0576 -2.4735 3.4252 10 1 4.4904 -2.6147 3.0614 11 1 2.8184 -3.1040 4.7482 12 1 2.2182 -3.1426 2.3991 13 6 2.0401 -0.7214 -1.2491 14 1 1.6784 -1.7496 -1.2492 15 6 1.5303 -0.0005 -2.4991 16 6 2.0128 -0.7402 -3.7491 17 6 3.5444 -0.7372 -3.7799 18 7 4.0440 -1.2973 -2.5168 19 6 4.9183 -2.3231 -2.5186 20 8 5.3270 -2.7732 -1.4693 21 6 5.3921 -2.9069 -3.8246 22 6 6.3715 -4.0491 -3.5471 23 6 6.8459 -4.6325 -4.8531 24 6 6.1588 -5.6853 -5.4419 25 6 6.6251 -6.1877 -6.6440 26 6 7.7649 -5.6324 -7.2118 27 8 8.2353 -6.1193 -8.3876 28 7 8.3955 -4.6332 -6.6176 29 6 7.9719 -4.1298 -5.4736 30 6 3.5677 -0.7219 -1.2516 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6317 1.1528 35 1 3.0613 -0.4618 5.4349 36 1 1.9126 1.0202 -2.5110 37 1 0.4406 0.0203 -2.4875 38 1 1.6300 -0.2397 -4.6385 39 1 1.6514 -1.7683 -3.7256 40 1 3.9057 0.2847 -3.8947 41 1 3.8943 -1.3464 -4.6134 42 1 4.5375 -3.2883 -4.3835 43 1 5.8921 -2.1338 -4.4081 44 1 7.2260 -3.6673 -2.9884 45 1 5.8720 -4.8223 -2.9634 46 1 5.2780 -6.1003 -4.9744 47 1 6.1128 -7.0037 -7.1317 48 1 8.8734 -6.8391 -8.2880 49 1 8.5128 -3.3140 -5.0173 50 1 3.9329 -1.3209 -0.4173 51 1 3.9308 0.3014 -1.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496450636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:02 Heat of formation + Delta-G solvation = -38.684322 kcal Electronic energy + Delta-G solvation = -30447.996415 eV Core-core repulsion = 26347.472156 eV Total energy + Delta-G solvation = -4100.524258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.94647 -40.24714 -38.13468 -37.59234 -35.62200 -34.46493 -33.03616 -32.51304 -31.84245 -30.52862 -29.66931 -28.48617 -25.86565 -24.94969 -24.15206 -23.55669 -22.90671 -21.99222 -20.90491 -19.80844 -19.25147 -18.86295 -17.67948 -17.36466 -17.19888 -16.41670 -15.89633 -15.73488 -15.38376 -14.92020 -14.68849 -14.57690 -14.28798 -14.06060 -13.75879 -13.72770 -13.52273 -13.30463 -13.00524 -12.98904 -12.75143 -12.43329 -12.40709 -12.29035 -12.17624 -11.99248 -11.57004 -11.39257 -11.21062 -11.12298 -10.95725 -10.79661 -10.67023 -10.36008 -10.30086 -10.10031 -9.95217 -9.83870 -9.67439 -9.52501 -9.15769 -8.90126 -8.55876 -7.23012 -5.72943 -3.08200 0.53235 0.78607 2.63274 2.94937 3.06322 3.40039 3.44827 3.49015 3.53829 4.15641 4.26950 4.48463 4.51843 4.58421 4.60104 4.65028 4.78436 4.80663 4.83085 4.88637 5.00389 5.12769 5.17511 5.23133 5.24149 5.38373 5.48999 5.50747 5.54282 5.59247 5.63175 5.68960 5.79523 5.81207 5.89510 5.91216 6.01934 6.03852 6.10064 6.12837 6.30323 6.34227 6.40599 6.52681 6.62182 6.82337 7.01190 7.03128 7.43311 7.49086 8.02692 8.20042 8.46141 9.24698 9.97870 10.17200 11.45286 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.002305 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.689688 B =12144.381137 C =13481.664473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.056 0.944 4 N -0.748 5.748 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.068 0.932 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.612 5.612 19 C 0.509 3.491 20 O -0.535 6.535 21 C -0.133 4.133 22 C -0.062 4.062 23 C -0.139 4.139 24 C -0.057 4.057 25 C -0.182 4.182 26 C 0.301 3.699 27 O -0.484 6.484 28 N -0.501 5.501 29 C 0.127 3.873 30 C 0.120 3.880 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.400 0.600 49 H 0.162 0.838 50 H 0.100 0.900 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 -9.086 -27.565 29.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.074 0.926 4 N -0.391 5.391 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.205 1.205 13 C -0.127 4.127 14 H 0.086 0.914 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.017 4.017 18 N -0.345 5.345 19 C 0.297 3.703 20 O -0.411 6.411 21 C -0.173 4.173 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.083 4.083 25 C -0.204 4.204 26 C 0.122 3.878 27 O -0.291 6.291 28 N -0.220 5.220 29 C -0.029 4.029 30 C -0.001 4.001 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.257 0.743 49 H 0.179 0.821 50 H 0.118 0.882 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.598 -8.426 -27.506 29.308 hybrid contribution -0.249 -1.990 0.495 2.066 sum 5.349 -10.417 -27.011 29.440 Atomic orbital electron populations 1.22451 0.98810 1.00796 1.00430 1.20152 0.92006 0.95569 0.84767 0.92585 1.42826 1.79760 1.09400 1.07155 1.19031 1.36891 0.95440 0.85715 0.89242 1.24644 1.01396 0.97389 0.95579 1.69701 1.52695 1.35567 1.00261 0.86602 0.78879 0.86814 0.76555 1.20772 1.21910 1.20458 1.21727 0.94851 1.00437 0.95667 0.91377 1.21616 1.01183 0.99173 0.93284 1.21925 0.94894 1.01521 0.98911 1.21755 0.94788 0.99373 0.85831 1.48229 1.44368 1.34130 1.07816 1.20580 0.78926 0.79545 0.91245 1.90758 1.56451 1.60285 1.33640 1.21678 1.00478 0.98984 0.96182 1.20285 0.99778 0.97497 0.92496 1.20976 0.96870 0.97609 0.98672 1.21499 0.98762 0.94249 0.93744 1.22122 0.98935 1.02640 0.96655 1.19212 0.91339 0.91387 0.85840 1.84785 1.63741 1.55708 1.24895 1.67195 1.33445 1.11423 1.09894 1.22501 0.93347 0.97759 0.89336 1.21602 0.93816 0.99269 0.85440 0.92381 0.93963 0.93756 0.80620 0.93138 0.91617 0.91053 0.90866 0.91666 0.91207 0.90140 0.88931 0.88805 0.89413 0.89622 0.84138 0.84167 0.74276 0.82124 0.88194 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.14 37.16 0.34 -2.42 16 2 C 0.18 3.37 2.48 -67.93 -0.17 3.20 16 3 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.75 -17.46 4.32 -53.42 -0.23 -17.69 16 5 C -0.24 -6.75 10.41 -15.06 -0.16 -6.90 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.62 13.97 55.49 0.78 -28.85 16 9 Si 0.88 22.99 27.74 -169.99 -4.71 18.27 16 10 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 13 C -0.11 -1.57 1.96 -90.73 -0.18 -1.75 16 14 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.11 -1.25 4.85 -26.69 -0.13 -1.38 16 16 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 17 C 0.11 0.90 6.34 -3.71 -0.02 0.88 16 18 N -0.61 -7.67 2.98 -173.04 -0.52 -8.18 16 19 C 0.51 6.74 7.70 -10.98 -0.08 6.65 16 20 O -0.53 -9.62 15.40 5.56 0.09 -9.54 16 21 C -0.13 -1.12 4.03 -27.88 -0.11 -1.23 16 22 C -0.06 -0.53 4.66 -27.88 -0.13 -0.66 16 23 C -0.14 -1.08 5.15 -104.48 -0.54 -1.62 16 24 C -0.06 -0.39 9.85 -39.31 -0.39 -0.78 16 25 C -0.18 -1.29 10.04 -39.28 -0.39 -1.69 16 26 C 0.30 2.68 7.74 -17.12 -0.13 2.55 16 27 O -0.48 -3.70 13.56 -18.73 -0.25 -3.96 16 28 N -0.50 -5.12 10.39 -13.33 -0.14 -5.26 16 29 C 0.13 1.08 10.85 -17.56 -0.19 0.89 16 30 C 0.12 1.89 5.44 -3.93 -0.02 1.87 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.36 8.58 5.47 -40.82 -0.22 8.36 16 35 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 42 H 0.09 0.63 7.69 -51.93 -0.40 0.23 16 43 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 44 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 45 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 46 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.40 1.05 9.06 45.56 0.41 1.46 16 49 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 50 H 0.10 1.97 6.50 -51.93 -0.34 1.64 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -36.67 406.54 -8.86 -45.53 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.43 Total: 7.17 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.57 Total: -3.61 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.11 Total: -59.98 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.17 Total: -13.49 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.67 -8.86 -45.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.841 kcal (2) G-P(sol) polarization free energy of solvation -36.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds