Wall clock time and date at job start Wed Apr 1 2020 04:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47154 * 2 1 4 4 N 1.46504 * 109.46499 * 119.99079 * 2 1 3 5 5 C 1.36932 * 120.00393 * 274.99754 * 4 2 1 6 6 H 1.08004 * 119.99792 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00060 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99922 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46928 * 89.99834 * 9 7 5 11 11 H 1.48492 * 109.47512 * 209.99903 * 9 7 5 12 12 H 1.48501 * 109.47351 * 330.00315 * 9 7 5 13 13 C 1.52999 * 109.47362 * 239.99425 * 2 1 3 14 14 H 1.08998 * 109.52246 * 299.92066 * 13 2 1 15 15 C 1.53035 * 109.49569 * 59.99950 * 13 2 1 16 16 C 1.53044 * 109.53745 * 181.31383 * 15 13 2 17 17 C 1.53190 * 109.31247 * 298.63925 * 16 15 13 18 18 N 1.46923 * 108.77666 * 54.63326 * 17 16 15 19 19 C 1.34784 * 120.63216 * 126.36791 * 18 17 16 20 20 O 1.21274 * 119.99897 * 179.72777 * 19 18 17 21 21 C 1.50695 * 119.99635 * 359.97438 * 19 18 17 22 22 C 1.53002 * 109.47004 * 179.97438 * 21 19 18 23 23 C 1.50700 * 109.47331 * 180.02562 * 22 21 19 24 24 C 1.38825 * 120.35421 * 269.72664 * 23 22 21 25 25 C 1.38383 * 118.48427 * 179.73457 * 24 23 22 26 26 C 1.38919 * 119.10957 * 0.53835 * 25 24 23 27 27 O 1.35676 * 119.68390 * 179.75055 * 26 25 24 28 28 N 1.32251 * 120.63167 * 359.71958 * 26 25 24 29 29 C 1.31971 * 121.64426 * 0.02562 * 28 26 25 30 30 C 1.46927 * 118.74026 * 306.64450 * 18 17 16 31 31 H 1.08994 * 109.47360 * 300.00636 * 1 2 3 32 32 H 1.09004 * 109.46544 * 60.00639 * 1 2 3 33 33 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 34 34 H 0.97007 * 119.99250 * 95.00682 * 4 2 1 35 35 H 0.97003 * 119.99574 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46064 * 61.29762 * 15 13 2 37 37 H 1.08997 * 109.46778 * 301.34092 * 15 13 2 38 38 H 1.09000 * 109.49951 * 178.68518 * 16 15 13 39 39 H 1.09005 * 109.49454 * 58.59153 * 16 15 13 40 40 H 1.08997 * 109.59125 * 294.84367 * 17 16 15 41 41 H 1.08999 * 109.58528 * 174.41846 * 17 16 15 42 42 H 1.09005 * 109.47403 * 300.00056 * 21 19 18 43 43 H 1.09002 * 109.47422 * 60.00295 * 21 19 18 44 44 H 1.08997 * 109.47244 * 300.00535 * 22 21 19 45 45 H 1.09002 * 109.46787 * 59.99910 * 22 21 19 46 46 H 1.08003 * 120.76278 * 359.97418 * 24 23 22 47 47 H 1.07994 * 120.44508 * 180.23833 * 25 24 23 48 48 H 0.96704 * 113.99350 * 269.97212 * 27 26 25 49 49 H 1.07998 * 119.57951 * 179.97438 * 29 28 26 50 50 H 1.09000 * 109.58817 * 173.14754 * 30 18 17 51 51 H 1.09005 * 109.58520 * 293.56993 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1964 5 6 2.1490 -0.0072 2.3758 6 1 1.8919 1.0406 2.4243 7 6 2.6121 -0.6614 3.5092 8 7 2.7373 -0.0048 4.6430 9 14 3.0576 -2.4735 3.4252 10 1 4.4904 -2.6147 3.0614 11 1 2.8184 -3.1040 4.7482 12 1 2.2182 -3.1426 2.3991 13 6 2.0401 -0.7214 -1.2491 14 1 1.6784 -1.7496 -1.2492 15 6 1.5303 -0.0005 -2.4991 16 6 2.0128 -0.7402 -3.7491 17 6 3.5444 -0.7372 -3.7799 18 7 4.0440 -1.2973 -2.5168 19 6 4.9183 -2.3231 -2.5186 20 8 5.3270 -2.7732 -1.4693 21 6 5.3921 -2.9069 -3.8246 22 6 6.3715 -4.0491 -3.5471 23 6 6.8459 -4.6325 -4.8531 24 6 6.1588 -5.6853 -5.4419 25 6 6.6251 -6.1877 -6.6440 26 6 7.7649 -5.6324 -7.2118 27 8 8.2353 -6.1193 -8.3876 28 7 8.3955 -4.6332 -6.6176 29 6 7.9719 -4.1298 -5.4736 30 6 3.5677 -0.7219 -1.2516 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6317 1.1528 35 1 3.0613 -0.4618 5.4349 36 1 1.9126 1.0202 -2.5110 37 1 0.4406 0.0203 -2.4875 38 1 1.6300 -0.2397 -4.6385 39 1 1.6514 -1.7683 -3.7256 40 1 3.9057 0.2847 -3.8947 41 1 3.8943 -1.3464 -4.6134 42 1 4.5375 -3.2883 -4.3835 43 1 5.8921 -2.1338 -4.4081 44 1 7.2260 -3.6673 -2.9884 45 1 5.8720 -4.8223 -2.9634 46 1 5.2780 -6.1003 -4.9744 47 1 6.1128 -7.0037 -7.1317 48 1 8.8734 -6.8391 -8.2880 49 1 8.5128 -3.3140 -5.0173 50 1 3.9329 -1.3209 -0.4173 51 1 3.9308 0.3014 -1.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496450636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:01 Heat of formation + Delta-G solvation = -66.716036 kcal Electronic energy + Delta-G solvation = -30449.211961 eV Core-core repulsion = 26347.472156 eV Total energy + Delta-G solvation = -4101.739804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58937 -41.19102 -39.25080 -38.21392 -37.05586 -35.18449 -34.63420 -33.26872 -33.08239 -31.85640 -30.75950 -29.71147 -26.76449 -26.12627 -24.97632 -24.69294 -24.08121 -22.70743 -22.05504 -21.25748 -19.79953 -19.77576 -19.57329 -18.24531 -17.95371 -17.01237 -16.89728 -16.75615 -16.60703 -16.04061 -15.97873 -15.52838 -15.25523 -15.15238 -14.78786 -14.57844 -14.46082 -14.29794 -14.17976 -14.14570 -14.05902 -13.72461 -13.55150 -13.23152 -13.01141 -12.91595 -12.87586 -12.60261 -12.53851 -12.31848 -12.18783 -12.03824 -11.90066 -11.84714 -11.67759 -11.38582 -11.25213 -11.02705 -10.87418 -10.73634 -10.40432 -9.74541 -9.60546 -9.29852 -8.03879 -5.34275 -0.02602 0.24438 1.31755 1.38179 1.40360 1.64920 2.02576 2.44817 2.53513 2.84122 3.28696 3.43863 3.53485 3.73630 3.81112 3.88765 3.91920 3.94920 4.00433 4.07860 4.14598 4.22385 4.25553 4.31876 4.43866 4.48509 4.59389 4.59623 4.68613 4.74220 4.79124 4.82132 4.90747 4.94179 4.95218 5.01586 5.02146 5.06353 5.15541 5.19499 5.26931 5.32659 5.36726 5.52532 5.54781 5.59417 5.63120 5.78223 6.21591 6.48488 6.62670 6.93885 7.07549 7.21441 7.86044 8.02243 9.17878 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.002305 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.689688 B =12144.381137 C =13481.664473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.175 3.825 3 H 0.047 0.953 4 N -0.753 5.753 5 C -0.216 4.216 6 H 0.063 0.937 7 C -0.062 4.062 8 N -0.982 5.982 9 Si 0.944 3.056 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.259 1.259 13 C -0.092 4.092 14 H 0.060 0.940 15 C -0.111 4.111 16 C -0.128 4.128 17 C 0.098 3.902 18 N -0.610 5.610 19 C 0.501 3.499 20 O -0.594 6.594 21 C -0.120 4.120 22 C -0.056 4.056 23 C -0.137 4.137 24 C -0.054 4.054 25 C -0.179 4.179 26 C 0.288 3.712 27 O -0.496 6.496 28 N -0.533 5.533 29 C 0.118 3.882 30 C 0.124 3.876 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.359 0.641 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.162 0.838 47 H 0.163 0.837 48 H 0.418 0.582 49 H 0.170 0.830 50 H 0.052 0.948 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -10.188 -31.806 33.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.067 3.933 3 H 0.065 0.935 4 N -0.396 5.396 5 C -0.347 4.347 6 H 0.081 0.919 7 C -0.253 4.253 8 N -0.633 5.633 9 Si 0.774 3.226 10 H -0.218 1.218 11 H -0.220 1.220 12 H -0.184 1.184 13 C -0.113 4.113 14 H 0.079 0.921 15 C -0.149 4.149 16 C -0.166 4.166 17 C -0.023 4.023 18 N -0.342 5.342 19 C 0.291 3.709 20 O -0.475 6.475 21 C -0.159 4.159 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.080 4.080 25 C -0.200 4.200 26 C 0.109 3.891 27 O -0.306 6.306 28 N -0.252 5.252 29 C -0.038 4.038 30 C 0.001 3.999 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.192 0.808 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.179 0.821 47 H 0.180 0.820 48 H 0.279 0.721 49 H 0.187 0.813 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.363 -9.526 -31.850 33.529 hybrid contribution 0.134 -1.556 1.726 2.328 sum 4.497 -11.082 -30.125 32.412 Atomic orbital electron populations 1.22304 0.96968 1.01075 1.01098 1.20476 0.93197 0.95136 0.84500 0.93496 1.42907 1.79982 1.09329 1.07360 1.19030 1.34055 0.94424 0.87204 0.91939 1.25330 1.02939 1.01487 0.95541 1.69851 1.55168 1.37267 1.01049 0.85565 0.78106 0.82269 0.76702 1.21752 1.22026 1.18442 1.21561 0.93911 0.99996 0.95783 0.92123 1.21622 1.01785 0.99252 0.92227 1.21918 0.94498 1.01522 0.98623 1.22131 0.95091 1.00541 0.84512 1.48331 1.44027 1.33836 1.08048 1.21498 0.78115 0.79049 0.92240 1.90734 1.58479 1.62120 1.36132 1.21688 1.01436 0.99273 0.93541 1.20153 0.99274 0.97334 0.92666 1.20832 0.96905 0.98079 0.98074 1.21768 0.99110 0.93562 0.93536 1.22324 0.98208 1.02861 0.96571 1.19496 0.92005 0.91469 0.86095 1.84732 1.64515 1.56627 1.24767 1.67184 1.34603 1.12574 1.10851 1.22688 0.93767 0.98184 0.89149 1.21269 0.94584 0.98005 0.86087 0.95099 0.89902 0.93619 0.80808 0.93524 0.91042 0.89944 0.87508 0.91667 0.90052 0.86849 0.86155 0.86405 0.90811 0.90670 0.82066 0.81981 0.72122 0.81253 0.92929 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.14 71.98 0.66 -4.31 16 2 C 0.17 6.32 2.48 44.99 0.11 6.43 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.75 -35.72 4.32 -322.92 -1.40 -37.11 16 5 C -0.22 -12.49 10.41 84.03 0.87 -11.61 16 6 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 7 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 8 N -0.98 -64.63 13.97 21.65 0.30 -64.32 16 9 Si 0.94 49.14 27.74 68.60 1.90 51.05 16 10 H -0.29 -15.43 7.11 99.48 0.71 -14.73 16 11 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 12 H -0.26 -12.48 6.52 99.48 0.65 -11.83 16 13 C -0.09 -2.59 1.96 -10.86 -0.02 -2.61 16 14 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.11 -2.01 4.85 30.62 0.15 -1.86 16 16 C -0.13 -1.53 6.08 30.67 0.19 -1.35 16 17 C 0.10 1.26 6.34 86.36 0.55 1.80 16 18 N -0.61 -14.20 2.98 -819.75 -2.44 -16.64 16 19 C 0.50 12.69 7.70 87.65 0.67 13.36 16 20 O -0.59 -21.94 15.40 -3.01 -0.05 -21.98 16 21 C -0.12 -1.67 4.03 29.85 0.12 -1.55 16 22 C -0.06 -0.87 4.66 29.85 0.14 -0.73 16 23 C -0.14 -1.84 5.15 -19.77 -0.10 -1.94 16 24 C -0.05 -0.60 9.85 22.45 0.22 -0.37 16 25 C -0.18 -2.05 10.04 22.47 0.23 -1.83 16 26 C 0.29 4.64 7.74 84.79 0.66 5.29 16 27 O -0.50 -6.83 13.56 -89.93 -1.22 -8.05 16 28 N -0.53 -10.26 10.39 -308.95 -3.21 -13.47 16 29 C 0.12 1.85 10.85 84.62 0.92 2.77 16 30 C 0.12 3.89 5.44 86.22 0.47 4.36 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.98 6.40 -2.38 -0.02 1.96 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.36 17.26 5.47 -92.70 -0.51 16.75 16 35 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 36 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 1.35 6.36 -2.39 -0.02 1.33 16 38 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.76 5.93 -2.39 -0.01 0.74 16 42 H 0.12 1.06 7.69 -2.38 -0.02 1.04 16 43 H 0.12 1.13 7.94 -2.39 -0.02 1.11 16 44 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 45 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 46 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 47 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 48 H 0.42 1.62 9.06 -74.05 -0.67 0.95 16 49 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 50 H 0.05 2.17 6.50 -2.39 -0.02 2.15 16 51 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -85.14 406.54 -0.10 -85.24 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.29 Total: 22.73 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 6.30 Total: 2.57 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -6.74 Total: -131.55 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.27 Total: -30.03 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 1.90 Total: 51.05 kcal Total: -85.14 -0.10 -85.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.524 kcal (2) G-P(sol) polarization free energy of solvation -85.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds