Wall clock time and date at job start Wed Apr 1 2020 04:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 N 1.46502 * 109.47039 * 119.99405 * 2 1 3 5 5 C 1.36934 * 120.00166 * 275.00328 * 4 2 1 6 6 H 1.07994 * 120.00450 * 0.02562 * 5 4 2 7 7 C 1.38821 * 119.99642 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00136 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99748 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47117 * 89.99903 * 9 7 5 11 11 H 1.48496 * 109.47032 * 209.99844 * 9 7 5 12 12 H 1.48503 * 109.47134 * 330.00076 * 9 7 5 13 13 C 1.52995 * 109.47287 * 239.99549 * 2 1 3 14 14 H 1.09006 * 109.49803 * 185.06453 * 13 2 1 15 15 C 1.53042 * 109.49750 * 65.00233 * 13 2 1 16 16 C 1.53035 * 109.54021 * 178.64750 * 15 13 2 17 17 C 1.53196 * 109.30995 * 61.36728 * 16 15 13 18 18 N 1.46929 * 108.77486 * 305.36045 * 17 16 15 19 19 C 1.34766 * 120.63348 * 233.63046 * 18 17 16 20 20 O 1.21280 * 120.00139 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.99940 * 0.02562 * 19 18 17 22 22 C 1.53004 * 109.46932 * 179.97438 * 21 19 18 23 23 C 1.50704 * 109.46932 * 179.97438 * 22 21 19 24 24 C 1.38824 * 120.35668 * 90.00220 * 23 22 21 25 25 C 1.38371 * 118.48676 * 179.97438 * 24 23 22 26 26 C 1.38920 * 119.11330 * 0.02562 * 25 24 23 27 27 O 1.35674 * 119.68555 * 180.02562 * 26 25 24 28 28 N 1.32248 * 120.62836 * 0.02562 * 26 25 24 29 29 C 1.31959 * 121.64761 * 359.68344 * 28 26 25 30 30 C 1.46924 * 118.73409 * 53.61317 * 18 17 16 31 31 H 1.08997 * 109.47463 * 300.00512 * 1 2 3 32 32 H 1.09007 * 109.47124 * 60.00501 * 1 2 3 33 33 H 1.09003 * 109.47433 * 180.02562 * 1 2 3 34 34 H 0.97002 * 119.99772 * 94.99856 * 4 2 1 35 35 H 0.97005 * 120.00057 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46156 * 58.62744 * 15 13 2 37 37 H 1.08999 * 109.45763 * 298.67456 * 15 13 2 38 38 H 1.09001 * 109.49969 * 301.41757 * 16 15 13 39 39 H 1.08996 * 109.52938 * 181.33098 * 16 15 13 40 40 H 1.08998 * 109.58804 * 65.15483 * 17 16 15 41 41 H 1.09003 * 109.58394 * 185.58059 * 17 16 15 42 42 H 1.08994 * 109.47226 * 299.99850 * 21 19 18 43 43 H 1.09001 * 109.47128 * 60.00162 * 21 19 18 44 44 H 1.08994 * 109.47338 * 300.00144 * 22 21 19 45 45 H 1.09001 * 109.46786 * 60.00315 * 22 21 19 46 46 H 1.08004 * 120.75659 * 359.95524 * 24 23 22 47 47 H 1.07998 * 120.44648 * 180.02562 * 25 24 23 48 48 H 0.96706 * 114.00327 * 89.99514 * 27 26 25 49 49 H 1.07999 * 119.58430 * 180.30889 * 29 28 26 50 50 H 1.08999 * 109.58511 * 186.60055 * 30 18 17 51 51 H 1.08999 * 109.58969 * 66.17655 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8917 1.0404 2.4244 7 6 2.6112 -0.6618 3.5094 8 7 2.9233 -1.9391 3.4506 9 14 2.7902 0.2703 5.1183 10 1 1.5224 0.1802 5.8863 11 1 3.8943 -0.3236 5.9142 12 1 3.0962 1.6952 4.8334 13 6 2.0399 -0.7213 -1.2491 14 1 3.1262 -0.8008 -1.2053 15 6 1.6355 0.0685 -2.4960 16 6 2.1741 -0.6343 -3.7442 17 6 1.5626 -2.0356 -3.8401 18 7 1.8233 -2.7523 -2.5842 19 6 2.4150 -3.9631 -2.5946 20 8 2.6252 -4.5443 -1.5511 21 6 2.8165 -4.5944 -3.9029 22 6 3.4623 -5.9554 -3.6354 23 6 3.8633 -6.5869 -4.9437 24 6 5.1241 -6.3562 -5.4768 25 6 5.4518 -6.9560 -6.6800 26 6 4.5134 -7.7634 -7.3103 27 8 4.8225 -8.3576 -8.4902 28 7 3.3216 -7.9583 -6.7713 29 6 2.9823 -7.4047 -5.6226 30 6 1.4270 -2.1236 -1.3168 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 2.2489 -1.6317 1.1528 35 1 3.2466 -2.3964 4.2426 36 1 2.0500 1.0750 -2.4387 37 1 0.5485 0.1265 -2.5524 38 1 3.2590 -0.7146 -3.6769 39 1 1.9061 -0.0591 -4.6304 40 1 0.4872 -1.9550 -3.9984 41 1 2.0168 -2.5764 -4.6704 42 1 1.9337 -4.7273 -4.5282 43 1 3.5300 -3.9482 -4.4142 44 1 4.3451 -5.8221 -3.0102 45 1 2.7491 -6.6017 -3.1239 46 1 5.8331 -5.7229 -4.9642 47 1 6.4240 -6.7985 -7.1231 48 1 5.2241 -9.2323 -8.3968 49 1 2.0016 -7.5905 -5.2102 50 1 1.7916 -2.7224 -0.4822 51 1 0.3405 -2.0502 -1.2693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496450637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:05 Heat of formation + Delta-G solvation = -39.897038 kcal Electronic energy + Delta-G solvation = -30345.366916 eV Core-core repulsion = 26244.790071 eV Total energy + Delta-G solvation = -4100.576845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.89147 -40.17871 -38.07424 -37.53429 -35.44012 -34.39111 -32.96444 -32.44815 -31.87969 -30.21061 -29.38752 -27.81028 -25.94843 -24.74508 -24.12398 -24.00152 -23.15085 -21.96676 -21.09138 -19.22259 -19.19975 -18.57847 -17.43633 -17.30118 -16.96916 -16.36441 -15.82186 -15.59664 -15.33849 -14.82277 -14.70083 -14.52803 -14.13526 -13.95975 -13.74354 -13.68051 -13.49080 -13.42631 -12.94634 -12.86819 -12.63274 -12.46056 -12.33759 -12.23142 -11.95210 -11.83099 -11.52119 -11.30802 -11.11649 -10.99954 -10.84173 -10.62192 -10.43152 -10.25340 -10.22615 -10.21706 -9.89444 -9.78983 -9.62674 -9.49617 -9.09949 -8.87224 -8.42651 -6.91263 -5.70241 -2.99785 0.58553 0.84080 2.73557 3.02824 3.12331 3.45504 3.46156 3.50849 3.52982 4.22682 4.32624 4.54642 4.58134 4.60711 4.65756 4.70599 4.85821 4.88513 4.91588 5.00522 5.08102 5.24025 5.24353 5.29342 5.35201 5.48321 5.55754 5.60015 5.61618 5.66890 5.77385 5.84023 5.85800 5.89105 5.96538 5.98442 6.08661 6.13658 6.15648 6.25422 6.37868 6.42160 6.58717 6.65513 6.78054 6.91627 7.07580 7.14141 7.52762 7.53957 7.74332 8.30635 8.47404 9.58296 10.16660 10.50767 11.51838 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.002056 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.703869 B =13613.732001 C =14734.833014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.107 3.893 18 N -0.611 5.611 19 C 0.508 3.492 20 O -0.531 6.531 21 C -0.133 4.133 22 C -0.062 4.062 23 C -0.138 4.138 24 C -0.057 4.057 25 C -0.182 4.182 26 C 0.300 3.700 27 O -0.485 6.485 28 N -0.502 5.502 29 C 0.127 3.873 30 C 0.115 3.885 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.399 0.601 49 H 0.161 0.839 50 H 0.100 0.900 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -7.124 -24.766 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.066 0.934 4 N -0.367 5.367 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.017 4.017 18 N -0.345 5.345 19 C 0.296 3.704 20 O -0.407 6.407 21 C -0.173 4.173 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.082 4.082 25 C -0.203 4.203 26 C 0.121 3.879 27 O -0.292 6.292 28 N -0.220 5.220 29 C -0.030 4.030 30 C -0.006 4.006 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.257 0.743 49 H 0.179 0.821 50 H 0.118 0.882 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.805 -7.368 -24.790 25.874 hybrid contribution 0.938 0.379 1.366 1.700 sum 1.743 -6.989 -23.424 24.506 Atomic orbital electron populations 1.22576 0.99564 1.00874 0.99920 1.20174 0.91801 0.95269 0.85815 0.93367 1.42493 1.78107 1.10809 1.05282 1.19214 1.36622 0.93818 0.87378 0.91273 1.24755 1.02278 0.95963 0.98008 1.69676 1.50721 1.08571 1.28778 0.86228 0.77256 0.78748 0.84164 1.21814 1.21850 1.20860 1.21777 1.00944 0.94366 0.95255 0.90854 1.21606 1.01061 0.98950 0.93609 1.21921 1.01051 0.95445 0.98857 1.21735 1.00622 0.93234 0.86063 1.48204 1.60178 1.18152 1.07967 1.20566 0.77530 0.81128 0.91189 1.90777 1.53989 1.61916 1.33986 1.21675 1.02343 0.97054 0.96237 1.20291 1.02616 0.94734 0.92434 1.20995 0.95083 0.99279 0.98675 1.21510 0.95977 0.96643 0.94102 1.22123 1.00945 1.01036 0.96240 1.19204 0.88815 0.94047 0.85789 1.84782 1.82667 1.36656 1.25052 1.67179 1.19056 1.24241 1.11549 1.22495 0.99464 0.92214 0.88826 1.21846 0.99264 0.93865 0.85658 0.92907 0.94350 0.93229 0.78079 0.93523 0.91658 0.91522 0.91590 0.91014 0.91385 0.90179 0.88934 0.88967 0.89493 0.89430 0.84075 0.84180 0.74311 0.82146 0.88204 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.76 37.15 0.33 -2.61 16 2 C 0.18 3.47 2.67 -67.94 -0.18 3.28 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.72 -18.15 5.06 -53.43 -0.27 -18.42 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 9 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C -0.10 -1.64 2.27 -90.50 -0.21 -1.85 16 14 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.11 -1.35 4.89 -26.69 -0.13 -1.48 16 16 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 17 C 0.11 0.97 6.34 -3.71 -0.02 0.95 16 18 N -0.61 -8.00 2.97 -172.77 -0.51 -8.52 16 19 C 0.51 7.03 7.70 -10.99 -0.08 6.94 16 20 O -0.53 -9.90 15.39 5.56 0.09 -9.82 16 21 C -0.13 -1.19 4.03 -27.88 -0.11 -1.30 16 22 C -0.06 -0.56 4.66 -27.88 -0.13 -0.69 16 23 C -0.14 -1.13 5.15 -104.47 -0.54 -1.67 16 24 C -0.06 -0.42 9.85 -39.32 -0.39 -0.81 16 25 C -0.18 -1.37 10.04 -39.28 -0.39 -1.76 16 26 C 0.30 2.77 7.74 -17.12 -0.13 2.64 16 27 O -0.48 -3.85 13.56 -18.72 -0.25 -4.10 16 28 N -0.50 -5.28 10.39 -13.33 -0.14 -5.41 16 29 C 0.13 1.12 10.85 -17.57 -0.19 0.93 16 30 C 0.12 1.86 5.18 -3.71 -0.02 1.84 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.54 6.60 -51.93 -0.34 0.20 16 33 H 0.05 0.87 6.24 -51.93 -0.32 0.55 16 34 H 0.38 10.43 6.48 -40.82 -0.26 10.16 16 35 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.75 6.63 -51.93 -0.34 0.40 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 42 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 43 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 44 H 0.09 0.87 8.05 -51.93 -0.42 0.46 16 45 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 46 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 48 H 0.40 1.16 9.06 45.56 0.41 1.58 16 49 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 50 H 0.10 2.04 5.83 -51.93 -0.30 1.74 16 51 H 0.07 1.09 6.06 -51.93 -0.31 0.77 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -36.00 404.75 -9.11 -45.11 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.21 Total: 9.70 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.61 Total: -4.32 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.20 Total: -60.34 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.17 Total: -13.92 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.00 -9.11 -45.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.213 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds