Wall clock time and date at job start Wed Apr 1 2020 04:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 N 1.46502 * 109.47039 * 119.99405 * 2 1 3 5 5 C 1.36934 * 120.00166 * 275.00328 * 4 2 1 6 6 H 1.07994 * 120.00450 * 0.02562 * 5 4 2 7 7 C 1.38821 * 119.99642 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00136 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99748 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47117 * 89.99903 * 9 7 5 11 11 H 1.48496 * 109.47032 * 209.99844 * 9 7 5 12 12 H 1.48503 * 109.47134 * 330.00076 * 9 7 5 13 13 C 1.52995 * 109.47287 * 239.99549 * 2 1 3 14 14 H 1.09006 * 109.49803 * 185.06453 * 13 2 1 15 15 C 1.53042 * 109.49750 * 65.00233 * 13 2 1 16 16 C 1.53035 * 109.54021 * 178.64750 * 15 13 2 17 17 C 1.53196 * 109.30995 * 61.36728 * 16 15 13 18 18 N 1.46929 * 108.77486 * 305.36045 * 17 16 15 19 19 C 1.34766 * 120.63348 * 233.63046 * 18 17 16 20 20 O 1.21280 * 120.00139 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.99940 * 0.02562 * 19 18 17 22 22 C 1.53004 * 109.46932 * 179.97438 * 21 19 18 23 23 C 1.50704 * 109.46932 * 179.97438 * 22 21 19 24 24 C 1.38824 * 120.35668 * 90.00220 * 23 22 21 25 25 C 1.38371 * 118.48676 * 179.97438 * 24 23 22 26 26 C 1.38920 * 119.11330 * 0.02562 * 25 24 23 27 27 O 1.35674 * 119.68555 * 180.02562 * 26 25 24 28 28 N 1.32248 * 120.62836 * 0.02562 * 26 25 24 29 29 C 1.31959 * 121.64761 * 359.68344 * 28 26 25 30 30 C 1.46924 * 118.73409 * 53.61317 * 18 17 16 31 31 H 1.08997 * 109.47463 * 300.00512 * 1 2 3 32 32 H 1.09007 * 109.47124 * 60.00501 * 1 2 3 33 33 H 1.09003 * 109.47433 * 180.02562 * 1 2 3 34 34 H 0.97002 * 119.99772 * 94.99856 * 4 2 1 35 35 H 0.97005 * 120.00057 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46156 * 58.62744 * 15 13 2 37 37 H 1.08999 * 109.45763 * 298.67456 * 15 13 2 38 38 H 1.09001 * 109.49969 * 301.41757 * 16 15 13 39 39 H 1.08996 * 109.52938 * 181.33098 * 16 15 13 40 40 H 1.08998 * 109.58804 * 65.15483 * 17 16 15 41 41 H 1.09003 * 109.58394 * 185.58059 * 17 16 15 42 42 H 1.08994 * 109.47226 * 299.99850 * 21 19 18 43 43 H 1.09001 * 109.47128 * 60.00162 * 21 19 18 44 44 H 1.08994 * 109.47338 * 300.00144 * 22 21 19 45 45 H 1.09001 * 109.46786 * 60.00315 * 22 21 19 46 46 H 1.08004 * 120.75659 * 359.95524 * 24 23 22 47 47 H 1.07998 * 120.44648 * 180.02562 * 25 24 23 48 48 H 0.96706 * 114.00327 * 89.99514 * 27 26 25 49 49 H 1.07999 * 119.58430 * 180.30889 * 29 28 26 50 50 H 1.08999 * 109.58511 * 186.60055 * 30 18 17 51 51 H 1.08999 * 109.58969 * 66.17655 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8917 1.0404 2.4244 7 6 2.6112 -0.6618 3.5094 8 7 2.9233 -1.9391 3.4506 9 14 2.7902 0.2703 5.1183 10 1 1.5224 0.1802 5.8863 11 1 3.8943 -0.3236 5.9142 12 1 3.0962 1.6952 4.8334 13 6 2.0399 -0.7213 -1.2491 14 1 3.1262 -0.8008 -1.2053 15 6 1.6355 0.0685 -2.4960 16 6 2.1741 -0.6343 -3.7442 17 6 1.5626 -2.0356 -3.8401 18 7 1.8233 -2.7523 -2.5842 19 6 2.4150 -3.9631 -2.5946 20 8 2.6252 -4.5443 -1.5511 21 6 2.8165 -4.5944 -3.9029 22 6 3.4623 -5.9554 -3.6354 23 6 3.8633 -6.5869 -4.9437 24 6 5.1241 -6.3562 -5.4768 25 6 5.4518 -6.9560 -6.6800 26 6 4.5134 -7.7634 -7.3103 27 8 4.8225 -8.3576 -8.4902 28 7 3.3216 -7.9583 -6.7713 29 6 2.9823 -7.4047 -5.6226 30 6 1.4270 -2.1236 -1.3168 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 2.2489 -1.6317 1.1528 35 1 3.2466 -2.3964 4.2426 36 1 2.0500 1.0750 -2.4387 37 1 0.5485 0.1265 -2.5524 38 1 3.2590 -0.7146 -3.6769 39 1 1.9061 -0.0591 -4.6304 40 1 0.4872 -1.9550 -3.9984 41 1 2.0168 -2.5764 -4.6704 42 1 1.9337 -4.7273 -4.5282 43 1 3.5300 -3.9482 -4.4142 44 1 4.3451 -5.8221 -3.0102 45 1 2.7491 -6.6017 -3.1239 46 1 5.8331 -5.7229 -4.9642 47 1 6.4240 -6.7985 -7.1231 48 1 5.2241 -9.2323 -8.3968 49 1 2.0016 -7.5905 -5.2102 50 1 1.7916 -2.7224 -0.4822 51 1 0.3405 -2.0502 -1.2693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496450637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:04 Heat of formation + Delta-G solvation = -67.354417 kcal Electronic energy + Delta-G solvation = -30346.557557 eV Core-core repulsion = 26244.790071 eV Total energy + Delta-G solvation = -4101.767487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.58113 -41.19241 -39.24927 -38.20032 -36.90867 -35.16852 -34.60113 -33.18441 -33.06578 -31.56391 -30.46400 -29.26354 -26.88400 -26.28933 -25.15982 -24.68722 -24.53305 -22.70799 -22.21279 -20.51185 -19.77389 -19.68463 -19.20599 -18.20448 -17.93962 -17.01047 -16.93019 -16.72587 -16.50537 -16.08079 -15.71974 -15.50330 -15.34640 -15.25917 -14.92481 -14.74152 -14.34952 -14.16231 -14.09666 -13.99364 -13.91357 -13.72100 -13.34356 -13.07786 -12.95404 -12.84997 -12.83161 -12.64568 -12.55870 -12.28177 -12.06030 -12.02741 -11.87038 -11.78017 -11.71736 -11.37161 -11.17101 -10.93770 -10.86300 -10.71716 -10.39549 -9.73376 -9.53652 -9.00273 -7.92265 -5.21415 -0.01600 0.25156 1.44568 1.47071 1.55328 1.68249 2.06203 2.54238 2.55977 2.85313 3.40230 3.46289 3.73641 3.76373 3.88949 3.91929 3.92326 3.98846 4.01808 4.12370 4.15555 4.24799 4.27987 4.36322 4.43154 4.49324 4.58297 4.64175 4.69340 4.74573 4.75297 4.85703 4.92291 4.94299 4.95529 5.03205 5.10975 5.13108 5.16898 5.19190 5.26140 5.34253 5.40126 5.47303 5.53946 5.59336 5.61524 5.70250 6.28963 6.51292 6.63576 6.94627 7.25541 7.33871 8.12954 8.34053 9.31132 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.002056 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.703869 B =13613.732001 C =14734.833014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.046 0.954 4 N -0.740 5.740 5 C -0.235 4.235 6 H 0.078 0.922 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.973 3.027 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.267 1.267 13 C -0.090 4.090 14 H 0.043 0.957 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.100 3.900 18 N -0.611 5.611 19 C 0.499 3.501 20 O -0.593 6.593 21 C -0.119 4.119 22 C -0.056 4.056 23 C -0.137 4.137 24 C -0.056 4.056 25 C -0.179 4.179 26 C 0.288 3.712 27 O -0.496 6.496 28 N -0.532 5.532 29 C 0.120 3.880 30 C 0.124 3.876 31 H 0.032 0.968 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.418 0.582 49 H 0.172 0.828 50 H 0.045 0.955 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 -5.374 -27.980 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.064 0.936 4 N -0.381 5.381 5 C -0.367 4.367 6 H 0.095 0.905 7 C -0.275 4.275 8 N -0.624 5.624 9 Si 0.802 3.198 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.192 1.192 13 C -0.111 4.111 14 H 0.062 0.938 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.021 4.021 18 N -0.343 5.343 19 C 0.289 3.711 20 O -0.473 6.473 21 C -0.159 4.159 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.081 4.081 25 C -0.200 4.200 26 C 0.110 3.890 27 O -0.306 6.306 28 N -0.251 5.251 29 C -0.036 4.036 30 C 0.001 3.999 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.177 0.823 47 H 0.180 0.820 48 H 0.279 0.721 49 H 0.189 0.811 50 H 0.064 0.936 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.345 -5.560 -28.085 28.632 hybrid contribution 1.067 -0.155 2.275 2.517 sum 1.412 -5.715 -25.810 26.473 Atomic orbital electron populations 1.22395 0.97460 1.00795 1.00993 1.20491 0.93146 0.94880 0.85272 0.93637 1.42765 1.78460 1.10310 1.06537 1.19651 1.34484 0.94181 0.88368 0.90451 1.25613 1.03330 0.96877 1.01668 1.69868 1.52874 1.10397 1.29240 0.85139 0.76772 0.78072 0.79796 1.21528 1.22545 1.19159 1.21586 0.98873 0.94636 0.95967 0.93806 1.21598 1.02119 0.98662 0.92318 1.21922 1.00463 0.95600 0.98724 1.22130 1.02268 0.93078 0.84669 1.48328 1.59483 1.18182 1.08293 1.21519 0.76446 0.80951 0.92208 1.90756 1.56432 1.63541 1.36598 1.21683 1.03967 0.96708 0.93512 1.20150 1.01729 0.94893 0.92671 1.20835 0.95547 0.99498 0.97992 1.21759 0.95854 0.96451 0.94051 1.22315 1.01490 1.00153 0.96024 1.19473 0.88934 0.94510 0.86072 1.84728 1.82903 1.38118 1.24855 1.67181 1.20114 1.25361 1.12458 1.22695 1.00178 0.92171 0.88584 1.21473 0.99230 0.93280 0.85960 0.94890 0.90104 0.93873 0.79872 0.94297 0.91065 0.89989 0.92409 0.87329 0.89462 0.86933 0.86124 0.86476 0.91000 0.90612 0.82317 0.82025 0.72115 0.81057 0.93633 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 8.76 71.98 0.63 -4.67 16 2 C 0.17 6.62 2.67 44.99 0.12 6.74 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 N -0.74 -38.63 5.06 -322.95 -1.63 -40.27 16 5 C -0.23 -13.41 9.93 84.04 0.83 -12.57 16 6 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 7 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 8 N -0.97 -62.93 13.06 21.65 0.28 -62.65 16 9 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C -0.09 -2.88 2.27 -10.72 -0.02 -2.90 16 14 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 15 C -0.11 -2.24 4.89 30.62 0.15 -2.10 16 16 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 17 C 0.10 1.42 6.34 86.36 0.55 1.97 16 18 N -0.61 -15.41 2.97 -818.91 -2.43 -17.84 16 19 C 0.50 13.81 7.70 87.66 0.67 14.49 16 20 O -0.59 -23.65 15.39 -3.03 -0.05 -23.70 16 21 C -0.12 -1.89 4.03 29.85 0.12 -1.77 16 22 C -0.06 -0.98 4.66 29.85 0.14 -0.84 16 23 C -0.14 -2.04 5.15 -19.77 -0.10 -2.14 16 24 C -0.06 -0.71 9.85 22.44 0.22 -0.49 16 25 C -0.18 -2.29 10.04 22.47 0.23 -2.07 16 26 C 0.29 4.91 7.74 84.79 0.66 5.56 16 27 O -0.50 -7.18 13.56 -89.91 -1.22 -8.40 16 28 N -0.53 -10.63 10.39 -308.95 -3.21 -13.84 16 29 C 0.12 1.98 10.85 84.63 0.92 2.90 16 30 C 0.12 4.10 5.18 86.36 0.45 4.54 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 2.04 6.60 -2.38 -0.02 2.02 16 33 H 0.04 1.50 6.24 -2.39 -0.01 1.49 16 34 H 0.37 21.42 6.48 -92.71 -0.60 20.81 16 35 H 0.25 15.63 8.31 -92.70 -0.77 14.85 16 36 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.08 1.47 6.63 -2.39 -0.02 1.45 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 0.93 5.93 -2.39 -0.01 0.92 16 42 H 0.12 1.29 7.94 -2.39 -0.02 1.27 16 43 H 0.12 1.32 7.69 -2.39 -0.02 1.31 16 44 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 45 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 46 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 48 H 0.42 1.91 9.06 -74.05 -0.67 1.24 16 49 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 50 H 0.05 2.02 5.83 -2.39 -0.01 2.01 16 51 H 0.08 2.38 6.06 -2.39 -0.01 2.37 16 Total: -1.00 -84.42 404.75 -0.33 -84.76 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.32 Total: 31.65 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.21 Total: 0.47 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -6.99 Total: -134.59 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.27 Total: -32.09 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -84.42 -0.33 -84.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.403 kcal (2) G-P(sol) polarization free energy of solvation -84.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds