Wall clock time and date at job start Wed Apr 1 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 N 1.46503 * 109.47246 * 240.00205 * 2 1 3 5 5 C 1.36936 * 120.00175 * 84.99328 * 4 2 1 6 6 H 1.08005 * 119.99885 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00209 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47128 * 60.00121 * 9 7 5 11 11 H 1.48499 * 109.47239 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47382 * 300.00308 * 9 7 5 13 13 C 1.52996 * 109.47382 * 119.99674 * 2 1 3 14 14 H 1.08994 * 109.50025 * 180.02562 * 13 2 1 15 15 C 1.53039 * 109.52731 * 300.14895 * 13 2 1 16 16 C 1.53035 * 109.54095 * 181.33342 * 15 13 2 17 17 C 1.53627 * 109.23800 * 298.50858 * 16 15 13 18 18 N 1.46922 * 108.54443 * 54.85405 * 17 16 15 19 19 C 1.34779 * 120.62631 * 126.36717 * 18 17 16 20 20 O 1.21290 * 119.99739 * 179.72145 * 19 18 17 21 21 C 1.50696 * 120.00521 * 359.72514 * 19 18 17 22 22 C 1.52998 * 109.47603 * 180.02562 * 21 19 18 23 23 C 1.50696 * 109.47223 * 179.97438 * 22 21 19 24 24 C 1.38832 * 120.35342 * 270.26350 * 23 22 21 25 25 C 1.38381 * 118.48432 * 180.29088 * 24 23 22 26 26 C 1.38919 * 119.11212 * 359.72896 * 25 24 23 27 27 O 1.35672 * 119.68392 * 180.02562 * 26 25 24 28 28 N 1.32255 * 120.63109 * 359.97438 * 26 25 24 29 29 C 1.31969 * 121.64375 * 0.02562 * 28 26 25 30 30 C 1.46918 * 118.74243 * 306.09646 * 18 17 16 31 31 H 1.09007 * 109.46999 * 300.00117 * 1 2 3 32 32 H 1.09005 * 109.47052 * 60.00015 * 1 2 3 33 33 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99652 * 264.99956 * 4 2 1 35 35 H 0.96995 * 119.99637 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.45525 * 301.35353 * 15 13 2 37 37 H 1.09005 * 109.46126 * 61.32077 * 15 13 2 38 38 H 1.09000 * 109.50029 * 58.58303 * 16 15 13 39 39 H 1.08998 * 109.50046 * 178.68827 * 16 15 13 40 40 H 1.09001 * 109.74154 * 295.12001 * 17 16 15 41 41 H 1.09000 * 109.66601 * 174.55308 * 17 16 15 42 42 H 1.08998 * 109.47136 * 59.99246 * 21 19 18 43 43 H 1.09000 * 109.46944 * 299.99855 * 21 19 18 44 44 H 1.09005 * 109.47244 * 59.99188 * 22 21 19 45 45 H 1.09000 * 109.46810 * 299.99885 * 22 21 19 46 46 H 1.08002 * 120.75771 * 359.97438 * 24 23 22 47 47 H 1.07997 * 120.44501 * 179.71628 * 25 24 23 48 48 H 0.96707 * 114.00013 * 269.97735 * 27 26 25 49 49 H 1.08002 * 119.57697 * 179.97438 * 29 28 26 50 50 H 1.08999 * 109.59128 * 173.64368 * 30 18 17 51 51 H 1.09000 * 109.58336 * 293.93028 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6113 -0.6619 -3.5093 8 7 2.9235 -1.9393 -3.4504 9 14 2.7902 0.2700 -5.1182 10 1 3.7462 1.3918 -4.9368 11 1 3.2980 -0.6487 -6.1686 12 1 1.4682 0.8078 -5.5285 13 6 2.0401 -0.7211 1.2492 14 1 3.1300 -0.7210 1.2499 15 6 1.5276 -0.0028 2.4996 16 6 2.0648 -0.7042 3.7492 17 6 1.5499 -2.1513 3.7782 18 7 1.9188 -2.8040 2.5147 19 6 2.5964 -3.9691 2.5159 20 8 2.8907 -4.5005 1.4661 21 6 2.9883 -4.6115 3.8215 22 6 3.7423 -5.9134 3.5433 23 6 4.1348 -6.5555 4.8489 24 6 5.3503 -6.2475 5.4448 25 6 5.6743 -6.8643 6.6404 26 6 4.7751 -7.7610 7.2037 27 8 5.0807 -8.3719 8.3759 28 7 3.6237 -8.0242 6.6086 29 6 3.2870 -7.4518 5.4682 30 6 1.5298 -2.1656 1.2499 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6317 -1.1526 35 1 3.2461 -2.3966 -4.2425 36 1 1.8689 1.0323 2.4892 37 1 0.4378 -0.0257 2.5107 38 1 3.1546 -0.7036 3.7267 39 1 1.7185 -0.1783 4.6389 40 1 0.4654 -2.1541 3.8878 41 1 2.0048 -2.6859 4.6121 42 1 2.0924 -4.8273 4.4036 43 1 3.6310 -3.9326 4.3820 44 1 4.6383 -5.6972 2.9613 45 1 3.1000 -6.5925 2.9826 46 1 6.0299 -5.5465 4.9830 47 1 6.6136 -6.6515 7.1290 48 1 5.5505 -9.2107 8.2715 49 1 2.3383 -7.6915 5.0111 50 1 1.9715 -2.7095 0.4149 51 1 0.4438 -2.1718 1.1564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496450638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:08 Heat of formation + Delta-G solvation = -39.396721 kcal Electronic energy + Delta-G solvation = -30365.589133 eV Core-core repulsion = 26265.033983 eV Total energy + Delta-G solvation = -4100.555150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88659 -40.16476 -38.06918 -37.53097 -35.42770 -34.38612 -32.96622 -32.44525 -31.83936 -30.19784 -29.37154 -27.83913 -25.91457 -24.77662 -24.11057 -23.95180 -23.16389 -21.95688 -21.11569 -19.21751 -19.19577 -18.55483 -17.44417 -17.29893 -16.96058 -16.35949 -15.79521 -15.58818 -15.33497 -14.79927 -14.71170 -14.52623 -14.12369 -13.95066 -13.73431 -13.68359 -13.49803 -13.41818 -12.98073 -12.85407 -12.64420 -12.41619 -12.32898 -12.22474 -11.94059 -11.81810 -11.53515 -11.30143 -11.11884 -10.98629 -10.82243 -10.60891 -10.43905 -10.26024 -10.23618 -10.20334 -9.89567 -9.78832 -9.61493 -9.48346 -9.09595 -8.86383 -8.41885 -6.91020 -5.69646 -2.99367 0.58952 0.84322 2.74657 3.03579 3.12865 3.45531 3.46806 3.51000 3.52530 4.23166 4.33110 4.55020 4.58486 4.61138 4.66350 4.71133 4.86080 4.88767 4.91775 5.01011 5.08427 5.24578 5.24854 5.29730 5.35384 5.48749 5.56140 5.60280 5.61844 5.67456 5.77898 5.84788 5.86206 5.89589 5.96853 5.98788 6.08335 6.13896 6.16042 6.26628 6.37443 6.43460 6.59608 6.66574 6.79223 6.91019 7.07786 7.14633 7.53834 7.54204 7.74181 8.31803 8.48079 9.58759 10.16983 10.51007 11.52343 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.002072 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.288896 B =13508.368439 C =14679.261345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.611 5.611 19 C 0.508 3.492 20 O -0.530 6.530 21 C -0.133 4.133 22 C -0.062 4.062 23 C -0.138 4.138 24 C -0.057 4.057 25 C -0.182 4.182 26 C 0.300 3.700 27 O -0.484 6.484 28 N -0.502 5.502 29 C 0.127 3.873 30 C 0.116 3.884 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.399 0.601 49 H 0.161 0.839 50 H 0.101 0.899 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -7.153 24.627 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.066 0.934 4 N -0.367 5.367 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.123 4.123 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.017 4.017 18 N -0.345 5.345 19 C 0.295 3.705 20 O -0.406 6.406 21 C -0.173 4.173 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.082 4.082 25 C -0.203 4.203 26 C 0.121 3.879 27 O -0.291 6.291 28 N -0.220 5.220 29 C -0.030 4.030 30 C -0.006 4.006 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.257 0.743 49 H 0.179 0.821 50 H 0.119 0.881 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.051 -7.468 24.601 25.731 hybrid contribution 0.937 0.463 -1.321 1.684 sum 1.988 -7.005 23.280 24.392 Atomic orbital electron populations 1.22573 0.99551 1.00838 0.99931 1.20173 0.91816 0.95270 0.85827 0.93385 1.42507 1.78135 1.10815 1.05270 1.19168 1.36775 0.93783 0.87403 0.91333 1.24752 1.02244 0.95962 0.98006 1.69666 1.50639 1.08537 1.28902 0.86303 0.77692 0.78579 0.83787 1.21377 1.21755 1.21368 1.21761 1.00870 0.94367 0.95275 0.90958 1.21622 1.00891 0.99200 0.93568 1.21994 1.01338 0.95099 0.98806 1.21825 1.00193 0.93758 0.85907 1.48202 1.56204 1.22406 1.07703 1.20573 0.77830 0.80818 0.91239 1.90785 1.53903 1.62430 1.33473 1.21673 1.01944 0.97422 0.96263 1.20290 1.02004 0.95342 0.92443 1.20993 0.95558 0.98860 0.98606 1.21512 0.95897 0.97130 0.93700 1.22123 1.01087 1.00350 0.96787 1.19208 0.89355 0.93417 0.85890 1.84785 1.78913 1.40407 1.25038 1.67191 1.18483 1.26423 1.09917 1.22497 0.99115 0.92019 0.89372 1.21808 0.99777 0.93275 0.85730 0.94286 0.92915 0.93327 0.78029 0.93465 0.91685 0.91422 0.91587 0.91061 0.91363 0.90173 0.88936 0.88978 0.89502 0.89413 0.84080 0.84185 0.74323 0.82141 0.88094 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.80 37.16 0.33 -2.61 16 2 C 0.18 3.47 2.72 -67.93 -0.19 3.28 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 N -0.73 -18.16 5.04 -53.42 -0.27 -18.43 16 5 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 9 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 C -0.10 -1.63 2.33 -90.50 -0.21 -1.85 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.11 -1.35 4.77 -26.69 -0.13 -1.48 16 16 C -0.13 -1.25 6.10 -26.39 -0.16 -1.41 16 17 C 0.11 0.98 6.37 -3.49 -0.02 0.96 16 18 N -0.61 -8.07 2.97 -172.51 -0.51 -8.58 16 19 C 0.51 7.08 7.70 -10.99 -0.08 6.99 16 20 O -0.53 -9.98 15.40 5.55 0.09 -9.89 16 21 C -0.13 -1.20 4.03 -27.89 -0.11 -1.31 16 22 C -0.06 -0.57 4.65 -27.89 -0.13 -0.70 16 23 C -0.14 -1.13 5.15 -104.48 -0.54 -1.67 16 24 C -0.06 -0.42 9.85 -39.31 -0.39 -0.81 16 25 C -0.18 -1.37 10.04 -39.28 -0.39 -1.76 16 26 C 0.30 2.78 7.74 -17.12 -0.13 2.65 16 27 O -0.48 -3.86 13.56 -18.72 -0.25 -4.11 16 28 N -0.50 -5.30 10.39 -13.33 -0.14 -5.43 16 29 C 0.13 1.12 10.85 -17.56 -0.19 0.93 16 30 C 0.12 1.89 5.21 -3.71 -0.02 1.87 16 31 H 0.04 0.55 6.46 -51.92 -0.34 0.21 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.85 6.32 -51.93 -0.33 0.52 16 34 H 0.38 10.41 6.16 -40.82 -0.25 10.16 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 42 H 0.09 0.67 7.93 -51.93 -0.41 0.26 16 43 H 0.09 0.69 7.70 -51.93 -0.40 0.29 16 44 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 45 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 46 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 48 H 0.40 1.17 9.06 45.56 0.41 1.59 16 49 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 50 H 0.10 2.09 5.59 -51.93 -0.29 1.80 16 51 H 0.07 1.09 6.19 -51.93 -0.32 0.77 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -36.02 404.23 -9.09 -45.11 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.18 Total: 9.83 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.61 Total: -4.25 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.19 Total: -60.45 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.17 Total: -14.00 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.02 -9.09 -45.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.710 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds