Wall clock time and date at job start Wed Apr 1 2020 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 N 1.46503 * 109.47246 * 240.00205 * 2 1 3 5 5 C 1.36936 * 120.00175 * 84.99328 * 4 2 1 6 6 H 1.08005 * 119.99885 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00209 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47128 * 60.00121 * 9 7 5 11 11 H 1.48499 * 109.47239 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47382 * 300.00308 * 9 7 5 13 13 C 1.52996 * 109.47382 * 119.99674 * 2 1 3 14 14 H 1.08994 * 109.50025 * 180.02562 * 13 2 1 15 15 C 1.53039 * 109.52731 * 300.14895 * 13 2 1 16 16 C 1.53035 * 109.54095 * 181.33342 * 15 13 2 17 17 C 1.53627 * 109.23800 * 298.50858 * 16 15 13 18 18 N 1.46922 * 108.54443 * 54.85405 * 17 16 15 19 19 C 1.34779 * 120.62631 * 126.36717 * 18 17 16 20 20 O 1.21290 * 119.99739 * 179.72145 * 19 18 17 21 21 C 1.50696 * 120.00521 * 359.72514 * 19 18 17 22 22 C 1.52998 * 109.47603 * 180.02562 * 21 19 18 23 23 C 1.50696 * 109.47223 * 179.97438 * 22 21 19 24 24 C 1.38832 * 120.35342 * 270.26350 * 23 22 21 25 25 C 1.38381 * 118.48432 * 180.29088 * 24 23 22 26 26 C 1.38919 * 119.11212 * 359.72896 * 25 24 23 27 27 O 1.35672 * 119.68392 * 180.02562 * 26 25 24 28 28 N 1.32255 * 120.63109 * 359.97438 * 26 25 24 29 29 C 1.31969 * 121.64375 * 0.02562 * 28 26 25 30 30 C 1.46918 * 118.74243 * 306.09646 * 18 17 16 31 31 H 1.09007 * 109.46999 * 300.00117 * 1 2 3 32 32 H 1.09005 * 109.47052 * 60.00015 * 1 2 3 33 33 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99652 * 264.99956 * 4 2 1 35 35 H 0.96995 * 119.99637 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.45525 * 301.35353 * 15 13 2 37 37 H 1.09005 * 109.46126 * 61.32077 * 15 13 2 38 38 H 1.09000 * 109.50029 * 58.58303 * 16 15 13 39 39 H 1.08998 * 109.50046 * 178.68827 * 16 15 13 40 40 H 1.09001 * 109.74154 * 295.12001 * 17 16 15 41 41 H 1.09000 * 109.66601 * 174.55308 * 17 16 15 42 42 H 1.08998 * 109.47136 * 59.99246 * 21 19 18 43 43 H 1.09000 * 109.46944 * 299.99855 * 21 19 18 44 44 H 1.09005 * 109.47244 * 59.99188 * 22 21 19 45 45 H 1.09000 * 109.46810 * 299.99885 * 22 21 19 46 46 H 1.08002 * 120.75771 * 359.97438 * 24 23 22 47 47 H 1.07997 * 120.44501 * 179.71628 * 25 24 23 48 48 H 0.96707 * 114.00013 * 269.97735 * 27 26 25 49 49 H 1.08002 * 119.57697 * 179.97438 * 29 28 26 50 50 H 1.08999 * 109.59128 * 173.64368 * 30 18 17 51 51 H 1.09000 * 109.58336 * 293.93028 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6113 -0.6619 -3.5093 8 7 2.9235 -1.9393 -3.4504 9 14 2.7902 0.2700 -5.1182 10 1 3.7462 1.3918 -4.9368 11 1 3.2980 -0.6487 -6.1686 12 1 1.4682 0.8078 -5.5285 13 6 2.0401 -0.7211 1.2492 14 1 3.1300 -0.7210 1.2499 15 6 1.5276 -0.0028 2.4996 16 6 2.0648 -0.7042 3.7492 17 6 1.5499 -2.1513 3.7782 18 7 1.9188 -2.8040 2.5147 19 6 2.5964 -3.9691 2.5159 20 8 2.8907 -4.5005 1.4661 21 6 2.9883 -4.6115 3.8215 22 6 3.7423 -5.9134 3.5433 23 6 4.1348 -6.5555 4.8489 24 6 5.3503 -6.2475 5.4448 25 6 5.6743 -6.8643 6.6404 26 6 4.7751 -7.7610 7.2037 27 8 5.0807 -8.3719 8.3759 28 7 3.6237 -8.0242 6.6086 29 6 3.2870 -7.4518 5.4682 30 6 1.5298 -2.1656 1.2499 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6317 -1.1526 35 1 3.2461 -2.3966 -4.2425 36 1 1.8689 1.0323 2.4892 37 1 0.4378 -0.0257 2.5107 38 1 3.1546 -0.7036 3.7267 39 1 1.7185 -0.1783 4.6389 40 1 0.4654 -2.1541 3.8878 41 1 2.0048 -2.6859 4.6121 42 1 2.0924 -4.8273 4.4036 43 1 3.6310 -3.9326 4.3820 44 1 4.6383 -5.6972 2.9613 45 1 3.1000 -6.5925 2.9826 46 1 6.0299 -5.5465 4.9830 47 1 6.6136 -6.6515 7.1290 48 1 5.5505 -9.2107 8.2715 49 1 2.3383 -7.6915 5.0111 50 1 1.9715 -2.7095 0.4149 51 1 0.4438 -2.1718 1.1564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496450638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:07 Heat of formation + Delta-G solvation = -66.870823 kcal Electronic energy + Delta-G solvation = -30366.780500 eV Core-core repulsion = 26265.033983 eV Total energy + Delta-G solvation = -4101.746516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.57871 -41.18799 -39.25086 -38.20062 -36.89698 -35.16736 -34.60480 -33.16632 -33.06064 -31.52880 -30.47196 -29.28710 -26.85618 -26.29668 -25.13855 -24.68783 -24.54242 -22.70486 -22.23791 -20.49456 -19.77458 -19.68388 -19.20847 -18.20157 -17.93922 -17.00875 -16.92400 -16.71946 -16.49465 -16.08586 -15.71837 -15.51182 -15.32559 -15.25888 -14.92900 -14.74647 -14.34191 -14.17275 -14.11638 -13.99685 -13.89607 -13.71598 -13.32776 -13.08193 -12.94314 -12.85003 -12.79413 -12.63854 -12.55767 -12.30739 -12.10438 -12.02684 -11.86804 -11.76751 -11.71238 -11.36849 -11.15908 -10.92266 -10.86046 -10.71632 -10.39586 -9.73411 -9.53724 -8.99989 -7.91794 -5.21098 -0.01480 0.25179 1.44498 1.48259 1.54432 1.68441 2.06070 2.54385 2.56279 2.85049 3.40394 3.46376 3.73799 3.76838 3.89128 3.91978 3.92865 3.98220 4.01958 4.11726 4.15370 4.25011 4.28117 4.36504 4.43077 4.49413 4.58237 4.64490 4.69313 4.74112 4.75095 4.86077 4.92343 4.94755 4.95805 5.03219 5.11518 5.14049 5.17022 5.19460 5.25695 5.34238 5.40416 5.47225 5.53893 5.59312 5.61557 5.70540 6.29294 6.51460 6.63574 6.94579 7.25795 7.34258 8.13471 8.34443 9.31333 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.002072 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.288896 B =13508.368439 C =14679.261345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 H 0.045 0.955 4 N -0.741 5.741 5 C -0.236 4.236 6 H 0.077 0.923 7 C -0.083 4.083 8 N -0.972 5.972 9 Si 0.973 3.027 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.277 1.277 13 C -0.090 4.090 14 H 0.044 0.956 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.099 3.901 18 N -0.611 5.611 19 C 0.498 3.502 20 O -0.593 6.593 21 C -0.119 4.119 22 C -0.056 4.056 23 C -0.137 4.137 24 C -0.055 4.055 25 C -0.179 4.179 26 C 0.288 3.712 27 O -0.496 6.496 28 N -0.532 5.532 29 C 0.120 3.880 30 C 0.124 3.876 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.160 0.840 47 H 0.162 0.838 48 H 0.418 0.582 49 H 0.172 0.828 50 H 0.045 0.955 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -5.465 27.879 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.063 0.937 4 N -0.381 5.381 5 C -0.368 4.368 6 H 0.095 0.905 7 C -0.275 4.275 8 N -0.623 5.623 9 Si 0.802 3.198 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.203 1.203 13 C -0.110 4.110 14 H 0.063 0.937 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.022 4.022 18 N -0.343 5.343 19 C 0.288 3.712 20 O -0.473 6.473 21 C -0.158 4.158 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.081 4.081 25 C -0.200 4.200 26 C 0.110 3.890 27 O -0.306 6.306 28 N -0.251 5.251 29 C -0.037 4.037 30 C 0.001 3.999 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.177 0.823 47 H 0.180 0.820 48 H 0.279 0.721 49 H 0.189 0.811 50 H 0.064 0.936 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.486 -5.724 27.935 28.520 hybrid contribution 1.101 -0.050 -2.240 2.496 sum 1.587 -5.774 25.696 26.384 Atomic orbital electron populations 1.22390 0.97406 1.00792 1.00985 1.20490 0.93189 0.94862 0.85305 0.93716 1.42783 1.78490 1.10358 1.06510 1.19614 1.34655 0.94162 0.88409 0.90498 1.25613 1.03288 0.96871 1.01678 1.69865 1.52802 1.10362 1.29311 0.85209 0.77995 0.77216 0.79341 1.20318 1.22537 1.20289 1.21576 0.99086 0.94324 0.96005 0.93723 1.21614 1.01658 0.99236 0.92237 1.21994 1.00925 0.95069 0.98672 1.22225 1.01719 0.93761 0.84479 1.48324 1.55622 1.22281 1.08055 1.21536 0.76777 0.80595 0.92260 1.90763 1.56312 1.64120 1.36122 1.21681 1.03476 0.97181 0.93506 1.20148 1.01181 0.95408 0.92707 1.20830 0.96051 0.99030 0.97950 1.21763 0.95684 0.97075 0.93571 1.22319 1.01546 0.99459 0.96644 1.19479 0.89466 0.93938 0.86120 1.84732 1.79288 1.41728 1.24839 1.67191 1.19576 1.27522 1.10830 1.22692 0.99779 0.92032 0.89152 1.21424 0.99361 0.93052 0.86048 0.90036 0.94938 0.93913 0.79755 0.94295 0.90927 0.90015 0.92298 0.87362 0.89539 0.86890 0.86142 0.86415 0.90982 0.90662 0.82283 0.82004 0.72126 0.81091 0.93596 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 8.80 71.98 0.63 -4.64 16 2 C 0.17 6.62 2.72 44.99 0.12 6.74 16 3 H 0.04 1.76 8.08 -2.39 -0.02 1.75 16 4 N -0.74 -38.70 5.04 -322.94 -1.63 -40.32 16 5 C -0.24 -13.52 9.93 84.03 0.83 -12.69 16 6 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 7 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 8 N -0.97 -62.99 13.06 21.65 0.28 -62.71 16 9 Si 0.97 47.82 29.55 68.60 2.03 49.85 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C -0.09 -2.86 2.33 -10.72 -0.02 -2.88 16 14 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 15 C -0.11 -2.25 4.77 30.62 0.15 -2.10 16 16 C -0.13 -1.86 6.10 30.82 0.19 -1.67 16 17 C 0.10 1.43 6.37 86.51 0.55 1.98 16 18 N -0.61 -15.58 2.97 -818.07 -2.43 -18.00 16 19 C 0.50 13.93 7.70 87.66 0.67 14.61 16 20 O -0.59 -23.88 15.40 -3.06 -0.05 -23.93 16 21 C -0.12 -1.90 4.03 29.85 0.12 -1.78 16 22 C -0.06 -0.99 4.65 29.85 0.14 -0.85 16 23 C -0.14 -2.05 5.15 -19.77 -0.10 -2.15 16 24 C -0.06 -0.70 9.85 22.45 0.22 -0.48 16 25 C -0.18 -2.29 10.04 22.47 0.23 -2.06 16 26 C 0.29 4.92 7.74 84.79 0.66 5.57 16 27 O -0.50 -7.19 13.56 -89.89 -1.22 -8.41 16 28 N -0.53 -10.68 10.39 -308.95 -3.21 -13.89 16 29 C 0.12 1.99 10.85 84.63 0.92 2.91 16 30 C 0.12 4.18 5.21 86.37 0.45 4.63 16 31 H 0.08 2.05 6.46 -2.38 -0.02 2.03 16 32 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.04 1.48 6.32 -2.39 -0.02 1.47 16 34 H 0.37 21.43 6.16 -92.71 -0.57 20.86 16 35 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.48 6.50 -2.38 -0.02 1.46 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 0.94 5.93 -2.39 -0.01 0.93 16 42 H 0.12 1.31 7.93 -2.39 -0.02 1.29 16 43 H 0.12 1.33 7.70 -2.39 -0.02 1.31 16 44 H 0.07 1.49 8.05 -2.38 -0.02 1.47 16 45 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 46 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.42 1.92 9.06 -74.05 -0.67 1.25 16 49 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 50 H 0.05 2.07 5.59 -2.39 -0.01 2.06 16 51 H 0.07 2.34 6.19 -2.39 -0.01 2.33 16 Total: -1.00 -84.61 404.23 -0.28 -84.89 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.29 Total: 31.88 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.22 Total: 0.65 kcal Atomic # 7 Polarization: -127.95 SS G_CDS: -6.98 Total: -134.93 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.27 Total: -32.34 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -84.61 -0.28 -84.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496450638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.020 kcal (2) G-P(sol) polarization free energy of solvation -84.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds