Wall clock time and date at job start Wed Apr 1 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 N 1.46897 * 109.47028 * 184.99742 * 4 2 1 6 6 C 1.46897 * 111.00124 * 293.95394 * 5 4 2 7 7 C 1.46904 * 111.00074 * 170.00155 * 5 4 2 8 8 C 1.50694 * 109.47463 * 190.00253 * 7 5 4 9 9 O 1.21294 * 119.99813 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00053 * 180.02562 * 8 7 5 11 11 C 1.37095 * 119.99771 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00171 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00063 * 179.97438 * 11 10 8 14 14 N 1.31410 * 119.99902 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00406 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46615 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46859 * 120.00006 * 15 13 11 18 18 H 1.48493 * 109.47273 * 240.00821 * 15 13 11 19 19 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 274.72131 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 24 24 C 1.53007 * 109.47063 * 300.00464 * 22 20 19 25 25 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 26 26 C 1.38236 * 119.99781 * 59.72964 * 25 22 20 27 27 C 1.38231 * 119.99714 * 179.81093 * 26 25 22 28 28 C 1.38236 * 120.00171 * 0.39247 * 27 26 25 29 29 C 1.38239 * 119.99745 * 359.86043 * 28 27 26 30 30 C 1.38230 * 119.99934 * 240.00245 * 25 22 20 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 33 33 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47415 * 304.99804 * 4 2 1 35 35 H 1.09008 * 109.47087 * 65.00143 * 4 2 1 36 36 H 1.08997 * 109.47210 * 60.00178 * 6 5 4 37 37 H 1.09004 * 109.47290 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47407 * 299.99706 * 6 5 4 39 39 H 1.09006 * 109.46985 * 310.00282 * 7 5 4 40 40 H 1.09003 * 109.47186 * 69.99791 * 7 5 4 41 41 H 0.96994 * 120.00278 * 359.97438 * 10 8 7 42 42 H 0.96998 * 120.00277 * 179.97438 * 14 13 11 43 43 H 0.97001 * 120.00384 * 95.00578 * 19 2 1 44 44 H 1.09001 * 109.46852 * 59.99630 * 24 22 20 45 45 H 1.08993 * 109.46731 * 179.97438 * 24 22 20 46 46 H 1.09003 * 109.46582 * 300.00001 * 24 22 20 47 47 H 1.08001 * 119.99944 * 359.97438 * 26 25 22 48 48 H 1.07999 * 119.99853 * 180.23178 * 27 26 25 49 49 H 1.07997 * 120.00142 * 179.84003 * 28 27 26 50 50 H 1.08002 * 119.99664 * 179.97438 * 29 28 27 51 51 H 1.07995 * 119.99993 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8266 -1.1904 6 6 4.1309 0.4993 -1.2720 7 6 4.0107 -1.7144 -2.2455 8 6 5.4724 -1.9937 -2.0079 9 8 6.0366 -1.5013 -1.0537 10 7 6.1529 -2.7899 -2.8561 11 6 7.4827 -3.0436 -2.6402 12 1 7.9850 -2.6058 -1.7901 13 6 8.1843 -3.8648 -3.5144 14 7 7.5731 -4.3978 -4.5484 15 14 9.9965 -4.2099 -3.2207 16 1 10.4445 -3.4957 -1.9982 17 1 10.1997 -5.6702 -3.0429 18 1 10.7855 -3.7386 -4.3870 19 7 2.0183 -0.6906 1.1962 20 6 2.1523 -0.0169 2.3557 21 8 1.8638 1.1599 2.4102 22 6 2.6605 -0.7257 3.5847 23 1 3.6590 -1.1179 3.3911 24 6 1.7184 -1.8795 3.9343 25 6 2.7159 0.2438 4.7371 26 6 1.5634 0.8769 5.1636 27 6 1.6134 1.7632 6.2232 28 6 2.8173 2.0228 6.8510 29 6 3.9707 1.3937 6.4210 30 6 3.9200 0.5044 5.3639 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1583 -2.1370 36 1 3.7910 1.1139 -0.4385 37 1 5.2147 0.3922 -1.2267 38 1 3.8524 0.9758 -2.2120 39 1 3.4545 -2.6517 -2.2299 40 1 3.8857 -1.2338 -3.2158 41 1 5.7018 -3.1833 -3.6193 42 1 8.0628 -4.9708 -5.1589 43 1 2.2491 -1.6318 1.1526 44 1 1.6780 -2.5808 3.1008 45 1 2.0862 -2.3924 4.8229 46 1 0.7199 -1.4873 4.1278 47 1 0.6234 0.6769 4.6708 48 1 0.7124 2.2549 6.5589 49 1 2.8569 2.7172 7.6771 50 1 4.9114 1.5968 6.9112 51 1 4.8211 0.0129 5.0280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498435274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:47 Heat of formation + Delta-G solvation = -47.288546 kcal Electronic energy + Delta-G solvation = -30589.897793 eV Core-core repulsion = 26489.000428 eV Total energy + Delta-G solvation = -4100.897365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39119 -39.04482 -38.47024 -36.95809 -34.68516 -34.29719 -33.77352 -31.27647 -31.05327 -30.95131 -29.23069 -28.01249 -26.91381 -25.01894 -24.75183 -22.97397 -22.61288 -21.94198 -20.46832 -19.92221 -19.16501 -17.86003 -17.18033 -16.98066 -16.27120 -16.01737 -15.51201 -15.26469 -15.16371 -14.72557 -14.64069 -14.41785 -14.02595 -13.95902 -13.69494 -13.60249 -13.41981 -13.34750 -12.97121 -12.83748 -12.62352 -12.36113 -12.17343 -12.11279 -12.02519 -11.81346 -11.68916 -11.51580 -11.37112 -11.25724 -11.05192 -10.97876 -10.95155 -10.71045 -10.35955 -10.24349 -9.66127 -9.50484 -8.96147 -8.90983 -8.77237 -8.47337 -8.00132 -7.88813 -6.43804 -3.84479 1.28439 1.39033 2.75663 3.14595 3.22569 3.25439 3.32408 3.79130 3.88338 3.94723 4.22559 4.45302 4.64389 4.75844 4.91465 4.92656 4.99817 5.04003 5.07573 5.13669 5.19382 5.20848 5.26118 5.40124 5.42437 5.46060 5.50990 5.55284 5.59623 5.68997 5.70374 5.72574 5.87846 5.90598 5.94110 5.97536 5.98550 6.00799 6.08804 6.25974 6.40610 6.45864 6.55650 6.57399 6.60476 6.95058 7.22728 7.33819 7.53501 7.64699 8.04718 8.35136 8.59867 9.16525 9.52669 10.04457 10.73994 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.002359 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.905542 B =11869.017399 C =13450.418220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.087 0.913 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.022 3.978 7 C 0.045 3.955 8 C 0.444 3.556 9 O -0.576 6.576 10 N -0.565 5.565 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.704 5.704 20 C 0.523 3.477 21 O -0.542 6.542 22 C -0.075 4.075 23 H 0.108 0.892 24 C -0.139 4.139 25 C -0.063 4.063 26 C -0.084 4.084 27 C -0.125 4.125 28 C -0.123 4.123 29 C -0.124 4.124 30 C -0.111 4.111 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.014 0.986 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.404 0.596 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.934 6.175 14.148 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.229 3.771 9 O -0.460 6.460 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.355 5.355 20 C 0.309 3.691 21 O -0.419 6.419 22 C -0.096 4.096 23 H 0.126 0.874 24 C -0.196 4.196 25 C -0.063 4.063 26 C -0.102 4.102 27 C -0.144 4.144 28 C -0.141 4.141 29 C -0.142 4.142 30 C -0.129 4.129 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.032 0.968 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.239 0.761 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.549 7.021 15.112 22.791 hybrid contribution 0.588 -0.570 -1.430 1.648 sum -14.961 6.450 13.682 21.276 Atomic orbital electron populations 1.22142 0.95225 1.02111 1.02459 1.20916 0.93167 0.97664 0.84032 0.89543 1.22503 0.89253 1.00829 0.96092 1.61571 1.03110 1.12237 1.46871 1.22555 1.03012 0.88491 0.98564 1.21883 0.96382 0.97522 0.92875 1.19725 0.87675 0.84154 0.85504 1.90493 1.69984 1.54191 1.31360 1.41878 1.10393 1.42894 1.25019 1.19733 0.84918 1.27026 1.10989 0.87894 1.25259 1.00480 0.96742 0.95518 1.69615 1.37329 1.32988 1.14419 0.85814 0.82062 0.78108 0.78456 1.19219 1.20752 1.20788 1.45777 1.66584 1.14286 1.08822 1.20337 0.77293 0.87137 0.84381 1.90693 1.50320 1.15830 1.85035 1.20318 1.02376 0.95509 0.91424 0.87363 1.21776 0.98829 0.96444 1.02555 1.19328 0.93732 0.97560 0.95715 1.20865 0.97933 0.95854 0.95550 1.21080 0.97861 0.98728 0.96681 1.21111 0.92934 0.99942 1.00121 1.21078 0.98303 0.97381 0.97435 1.21078 0.97133 0.98386 0.96269 0.91977 0.91783 0.92368 0.90304 0.93627 0.92117 0.88624 0.96786 0.89465 0.93502 0.77541 0.91942 0.76055 0.91546 0.91277 0.92086 0.86524 0.86383 0.86426 0.86180 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.49 37.16 0.35 -1.15 16 2 C 0.15 1.69 2.35 -67.93 -0.16 1.53 16 3 H 0.09 1.19 6.23 -51.93 -0.32 0.86 16 4 C 0.04 0.48 4.52 -3.83 -0.02 0.47 16 5 N -0.51 -7.93 4.22 -244.37 -1.03 -8.96 16 6 C 0.02 0.36 8.96 60.06 0.54 0.89 16 7 C 0.04 0.75 5.45 -4.98 -0.03 0.72 16 8 C 0.44 10.08 7.47 -10.99 -0.08 10.00 16 9 O -0.58 -14.99 13.91 5.55 0.08 -14.91 16 10 N -0.57 -13.94 5.29 -10.96 -0.06 -14.00 16 11 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 12 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 15 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 N -0.70 -8.19 4.69 -53.81 -0.25 -8.45 16 20 C 0.52 6.85 6.99 -10.98 -0.08 6.78 16 21 O -0.54 -8.86 14.75 5.55 0.08 -8.78 16 22 C -0.07 -0.82 2.90 -92.92 -0.27 -1.09 16 23 H 0.11 1.18 7.88 -51.93 -0.41 0.77 16 24 C -0.14 -1.15 8.90 37.16 0.33 -0.82 16 25 C -0.06 -0.75 4.40 -104.62 -0.46 -1.21 16 26 C -0.08 -0.98 7.92 -39.58 -0.31 -1.29 16 27 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 28 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 29 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 30 C -0.11 -1.27 9.67 -39.59 -0.38 -1.66 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 35 H 0.05 0.49 8.12 -51.92 -0.42 0.07 16 36 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 37 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 40 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 41 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.40 4.31 8.02 -40.82 -0.33 3.98 16 44 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.50 7.40 -51.93 -0.38 0.11 16 47 H 0.12 1.31 7.52 -52.49 -0.39 0.92 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 50 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 51 H 0.12 1.27 7.95 -52.49 -0.42 0.86 16 LS Contribution 416.44 15.07 6.28 6.28 Total: -1.00 -32.63 416.44 -9.38 -42.01 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -8.18 Total: 14.18 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.00 Total: 0.32 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.62 Total: -54.89 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.16 Total: -23.69 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.63 -9.38 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498435274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.274 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds