Wall clock time and date at job start Wed Apr 1 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 N 1.46897 * 109.47028 * 184.99742 * 4 2 1 6 6 C 1.46897 * 111.00124 * 293.95394 * 5 4 2 7 7 C 1.46904 * 111.00074 * 170.00155 * 5 4 2 8 8 C 1.50694 * 109.47463 * 190.00253 * 7 5 4 9 9 O 1.21294 * 119.99813 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00053 * 180.02562 * 8 7 5 11 11 C 1.37095 * 119.99771 * 179.97438 * 10 8 7 12 12 H 1.08006 * 120.00171 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00063 * 179.97438 * 11 10 8 14 14 N 1.31410 * 119.99902 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00406 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46615 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46859 * 120.00006 * 15 13 11 18 18 H 1.48493 * 109.47273 * 240.00821 * 15 13 11 19 19 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 20 20 C 1.34777 * 119.99828 * 274.72131 * 19 2 1 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 2 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 2 23 23 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 24 24 C 1.53007 * 109.47063 * 300.00464 * 22 20 19 25 25 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 26 26 C 1.38236 * 119.99781 * 59.72964 * 25 22 20 27 27 C 1.38231 * 119.99714 * 179.81093 * 26 25 22 28 28 C 1.38236 * 120.00171 * 0.39247 * 27 26 25 29 29 C 1.38239 * 119.99745 * 359.86043 * 28 27 26 30 30 C 1.38230 * 119.99934 * 240.00245 * 25 22 20 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 33 33 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47415 * 304.99804 * 4 2 1 35 35 H 1.09008 * 109.47087 * 65.00143 * 4 2 1 36 36 H 1.08997 * 109.47210 * 60.00178 * 6 5 4 37 37 H 1.09004 * 109.47290 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47407 * 299.99706 * 6 5 4 39 39 H 1.09006 * 109.46985 * 310.00282 * 7 5 4 40 40 H 1.09003 * 109.47186 * 69.99791 * 7 5 4 41 41 H 0.96994 * 120.00278 * 359.97438 * 10 8 7 42 42 H 0.96998 * 120.00277 * 179.97438 * 14 13 11 43 43 H 0.97001 * 120.00384 * 95.00578 * 19 2 1 44 44 H 1.09001 * 109.46852 * 59.99630 * 24 22 20 45 45 H 1.08993 * 109.46731 * 179.97438 * 24 22 20 46 46 H 1.09003 * 109.46582 * 300.00001 * 24 22 20 47 47 H 1.08001 * 119.99944 * 359.97438 * 26 25 22 48 48 H 1.07999 * 119.99853 * 180.23178 * 27 26 25 49 49 H 1.07997 * 120.00142 * 179.84003 * 28 27 26 50 50 H 1.08002 * 119.99664 * 179.97438 * 29 28 27 51 51 H 1.07995 * 119.99993 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8266 -1.1904 6 6 4.1309 0.4993 -1.2720 7 6 4.0107 -1.7144 -2.2455 8 6 5.4724 -1.9937 -2.0079 9 8 6.0366 -1.5013 -1.0537 10 7 6.1529 -2.7899 -2.8561 11 6 7.4827 -3.0436 -2.6402 12 1 7.9850 -2.6058 -1.7901 13 6 8.1843 -3.8648 -3.5144 14 7 7.5731 -4.3978 -4.5484 15 14 9.9965 -4.2099 -3.2207 16 1 10.4445 -3.4957 -1.9982 17 1 10.1997 -5.6702 -3.0429 18 1 10.7855 -3.7386 -4.3870 19 7 2.0183 -0.6906 1.1962 20 6 2.1523 -0.0169 2.3557 21 8 1.8638 1.1599 2.4102 22 6 2.6605 -0.7257 3.5847 23 1 3.6590 -1.1179 3.3911 24 6 1.7184 -1.8795 3.9343 25 6 2.7159 0.2438 4.7371 26 6 1.5634 0.8769 5.1636 27 6 1.6134 1.7632 6.2232 28 6 2.8173 2.0228 6.8510 29 6 3.9707 1.3937 6.4210 30 6 3.9200 0.5044 5.3639 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1583 -2.1370 36 1 3.7910 1.1139 -0.4385 37 1 5.2147 0.3922 -1.2267 38 1 3.8524 0.9758 -2.2120 39 1 3.4545 -2.6517 -2.2299 40 1 3.8857 -1.2338 -3.2158 41 1 5.7018 -3.1833 -3.6193 42 1 8.0628 -4.9708 -5.1589 43 1 2.2491 -1.6318 1.1526 44 1 1.6780 -2.5808 3.1008 45 1 2.0862 -2.3924 4.8229 46 1 0.7199 -1.4873 4.1278 47 1 0.6234 0.6769 4.6708 48 1 0.7124 2.2549 6.5589 49 1 2.8569 2.7172 7.6771 50 1 4.9114 1.5968 6.9112 51 1 4.8211 0.0129 5.0280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498435274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:46 Heat of formation + Delta-G solvation = -69.023225 kcal Electronic energy + Delta-G solvation = -30590.840280 eV Core-core repulsion = 26489.000428 eV Total energy + Delta-G solvation = -4101.839852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35047 -40.38382 -39.68706 -38.24996 -36.09243 -35.48601 -35.15220 -33.24737 -31.99736 -31.76858 -30.02670 -29.47799 -28.00336 -26.65086 -25.74446 -24.12183 -23.46862 -22.95380 -21.43147 -20.93815 -20.86630 -19.82627 -18.19282 -17.87142 -17.66919 -17.09886 -16.66567 -16.54359 -16.27510 -16.26992 -15.90039 -15.60049 -15.36864 -15.10610 -15.07660 -14.71802 -14.51054 -14.17488 -14.12269 -13.77250 -13.63813 -13.51023 -13.38257 -13.12178 -13.11037 -12.96650 -12.87786 -12.75005 -12.65234 -12.48370 -12.43027 -12.36735 -12.11584 -11.85717 -11.78975 -11.68696 -11.44311 -10.69283 -10.25181 -9.96903 -9.92981 -9.76091 -9.60222 -9.20806 -8.44809 -5.92495 0.45331 0.55056 1.36872 1.42298 1.55763 1.74454 2.09687 2.27977 2.31909 2.76395 2.96675 3.22639 3.44967 3.61863 3.77432 3.84829 4.09976 4.14513 4.17934 4.23643 4.25459 4.30168 4.35379 4.37736 4.43977 4.54604 4.55884 4.59689 4.64132 4.69383 4.71247 4.79576 4.83126 4.84229 4.94399 5.05618 5.13624 5.17189 5.18553 5.24307 5.31047 5.43402 5.58913 5.63727 5.64732 5.72757 5.88844 6.06796 6.14662 6.19644 6.63948 6.68805 7.16481 7.37052 7.60758 8.17103 8.72755 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.002359 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.905542 B =11869.017399 C =13450.418220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.060 0.940 4 C 0.047 3.953 5 N -0.527 5.527 6 C 0.032 3.968 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.614 6.614 10 N -0.576 5.576 11 C -0.327 4.327 12 H 0.077 0.923 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.698 5.698 20 C 0.519 3.481 21 O -0.579 6.579 22 C -0.072 4.072 23 H 0.105 0.895 24 C -0.132 4.132 25 C -0.078 4.078 26 C -0.099 4.099 27 C -0.133 4.133 28 C -0.128 4.128 29 C -0.131 4.131 30 C -0.131 4.131 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.118 0.882 40 H 0.066 0.934 41 H 0.396 0.604 42 H 0.276 0.724 43 H 0.411 0.589 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.115 0.885 48 H 0.138 0.862 49 H 0.143 0.857 50 H 0.139 0.861 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.261 5.450 13.982 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.078 0.922 4 C -0.081 4.081 5 N -0.251 5.251 6 C -0.116 4.116 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.500 6.500 10 N -0.214 5.214 11 C -0.457 4.457 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.813 3.187 16 H -0.199 1.199 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.348 5.348 20 C 0.306 3.694 21 O -0.459 6.459 22 C -0.094 4.094 23 H 0.123 0.877 24 C -0.189 4.189 25 C -0.079 4.079 26 C -0.117 4.117 27 C -0.151 4.151 28 C -0.145 4.145 29 C -0.149 4.149 30 C -0.149 4.149 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.136 0.864 40 H 0.084 0.916 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.247 0.753 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.133 0.867 48 H 0.156 0.844 49 H 0.161 0.839 50 H 0.157 0.843 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.905 6.269 14.922 23.404 hybrid contribution 0.966 -0.275 -1.343 1.677 sum -15.939 5.995 13.579 21.780 Atomic orbital electron populations 1.22047 0.93174 1.03273 1.02427 1.20937 0.94639 0.96229 0.83938 0.92201 1.22587 0.86301 1.02625 0.96547 1.61490 1.05552 1.11344 1.46727 1.22319 1.00449 0.89465 0.99357 1.21766 0.92111 0.99432 0.94016 1.20821 0.89986 0.82178 0.84049 1.90480 1.71615 1.55058 1.32809 1.41940 1.09836 1.43849 1.25766 1.19636 0.86572 1.28399 1.11075 0.90519 1.25977 1.04181 0.96090 0.95067 1.69668 1.38698 1.33107 1.14729 0.84925 0.77368 0.78233 0.78153 1.19933 1.19599 1.19829 1.45791 1.65925 1.14497 1.08603 1.20704 0.76713 0.86756 0.85204 1.90667 1.52140 1.17444 1.85670 1.20329 1.02651 0.96023 0.90368 0.87738 1.21757 0.98169 0.95593 1.03401 1.19518 0.94075 0.98133 0.96160 1.20978 0.97842 0.96607 0.96252 1.21400 0.99028 0.98372 0.96278 1.21450 0.92488 1.00004 1.00590 1.21390 0.99484 0.96904 0.97122 1.21288 0.97254 0.99255 0.97130 0.93567 0.90282 0.90537 0.87728 0.91898 0.92271 0.92759 0.95196 0.86418 0.91608 0.77039 0.91416 0.75313 0.90234 0.90483 0.91942 0.86724 0.84424 0.83908 0.84310 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.49 71.98 0.68 -1.79 16 2 C 0.15 3.16 2.35 44.99 0.11 3.26 16 3 H 0.06 1.63 6.23 -2.39 -0.01 1.61 16 4 C 0.05 0.94 4.52 86.30 0.39 1.33 16 5 N -0.53 -15.42 4.22 -927.04 -3.92 -19.33 16 6 C 0.03 1.06 8.96 127.69 1.14 2.21 16 7 C 0.06 1.82 5.45 85.55 0.47 2.28 16 8 C 0.44 20.12 7.47 87.66 0.66 20.77 16 9 O -0.61 -32.82 13.91 -3.07 -0.04 -32.86 16 10 N -0.58 -28.65 5.29 -306.99 -1.62 -30.27 16 11 C -0.33 -18.25 9.68 84.04 0.81 -17.43 16 12 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 14 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 15 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 N -0.70 -15.66 4.69 -442.53 -2.08 -17.74 16 20 C 0.52 13.76 6.99 87.66 0.61 14.37 16 21 O -0.58 -19.50 14.75 -3.04 -0.04 -19.54 16 22 C -0.07 -1.61 2.90 -12.28 -0.04 -1.64 16 23 H 0.10 2.35 7.88 -2.39 -0.02 2.33 16 24 C -0.13 -2.09 8.90 71.98 0.64 -1.45 16 25 C -0.08 -1.91 4.40 -19.87 -0.09 -2.00 16 26 C -0.10 -2.33 7.92 22.27 0.18 -2.15 16 27 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 28 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 29 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 30 C -0.13 -3.09 9.67 22.27 0.22 -2.87 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 35 H 0.06 1.11 8.12 -2.38 -0.02 1.09 16 36 H 0.06 1.93 6.58 -2.39 -0.02 1.92 16 37 H 0.05 2.25 5.82 -2.38 -0.01 2.24 16 38 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.12 3.05 7.93 -2.38 -0.02 3.03 16 40 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 41 H 0.40 18.64 7.90 -92.71 -0.73 17.90 16 42 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 43 H 0.41 8.14 8.02 -92.71 -0.74 7.40 16 44 H 0.08 1.03 7.56 -2.39 -0.02 1.01 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 0.97 7.40 -2.39 -0.02 0.95 16 47 H 0.11 2.64 7.52 -2.91 -0.02 2.62 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 50 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 51 H 0.13 2.72 7.95 -2.91 -0.02 2.69 16 Total: -1.00 -72.75 416.44 0.99 -71.76 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -0.53 Total: 44.52 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.92 Total: 7.47 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -7.33 Total: -116.00 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -0.09 Total: -52.40 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.75 0.99 -71.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498435274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.741 kcal (2) G-P(sol) polarization free energy of solvation -72.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds