Wall clock time and date at job start Wed Apr 1 2020 04:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47135 * 2 1 4 4 C 1.52997 * 109.46997 * 120.00148 * 2 1 3 5 5 C 1.50700 * 109.47142 * 295.00074 * 4 2 1 6 6 O 1.21278 * 119.99809 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99820 * 185.23561 * 7 5 4 9 9 C 1.53000 * 109.45984 * 55.06576 * 8 7 5 10 10 O 1.42906 * 109.47148 * 54.71644 * 9 8 7 11 11 C 1.53042 * 109.45040 * 175.03468 * 8 7 5 12 12 C 1.53193 * 109.31127 * 58.64540 * 11 8 7 13 13 N 1.46930 * 108.77157 * 54.63864 * 12 11 8 14 14 C 1.36940 * 120.62610 * 126.41456 * 13 12 11 15 15 H 1.08001 * 119.99558 * 210.54394 * 14 13 12 16 16 C 1.38808 * 120.00314 * 30.54469 * 14 13 12 17 17 N 1.31615 * 120.00108 * 14.92475 * 16 14 13 18 18 Si 1.86799 * 119.99784 * 194.92152 * 16 14 13 19 19 H 1.48501 * 109.46993 * 60.00405 * 18 16 14 20 20 H 1.48504 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47314 * 300.00083 * 18 16 14 22 22 C 1.46924 * 118.74071 * 306.38750 * 13 12 11 23 23 C 1.53041 * 109.45758 * 295.09657 * 8 7 5 24 24 C 1.50702 * 109.46839 * 239.99710 * 2 1 3 25 25 C 1.38651 * 120.79341 * 299.72424 * 24 2 1 26 26 C 1.38205 * 119.16206 * 179.75657 * 25 24 2 27 27 N 1.31872 * 120.76249 * 0.52740 * 26 25 24 28 28 C 1.31864 * 121.72847 * 359.74205 * 27 26 25 29 29 C 1.38203 * 120.76515 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47625 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47375 * 300.00401 * 1 2 3 32 32 H 1.09004 * 109.47152 * 59.99857 * 1 2 3 33 33 H 1.09002 * 109.47333 * 174.99401 * 4 2 1 34 34 H 1.09004 * 109.47067 * 54.99581 * 4 2 1 35 35 H 0.96994 * 120.00166 * 5.23115 * 7 5 4 36 36 H 1.09002 * 109.47305 * 294.71780 * 9 8 7 37 37 H 1.09003 * 109.47391 * 174.71220 * 9 8 7 38 38 H 0.96696 * 113.99916 * 180.02562 * 10 9 8 39 39 H 1.08993 * 109.49321 * 178.60147 * 11 8 7 40 40 H 1.09004 * 109.49454 * 298.69694 * 11 8 7 41 41 H 1.08994 * 109.58981 * 294.84864 * 12 11 8 42 42 H 1.09004 * 109.58439 * 174.42348 * 12 11 8 43 43 H 0.96992 * 120.00077 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.58362 * 293.82324 * 22 13 12 45 45 H 1.08996 * 109.70606 * 173.46923 * 22 13 12 46 46 H 1.09002 * 109.50136 * 61.31131 * 23 8 7 47 47 H 1.09005 * 109.49477 * 181.40589 * 23 8 7 48 48 H 1.07996 * 120.41816 * 0.02562 * 25 24 2 49 49 H 1.07997 * 119.61896 * 180.29529 * 26 25 24 50 50 H 1.08006 * 119.62176 * 179.97438 * 28 27 26 51 51 H 1.08005 * 120.42195 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0873 2.3632 7 7 1.9853 -0.3915 3.7001 8 6 1.5012 0.3010 4.8969 9 6 -0.0256 0.3904 4.8516 10 8 -0.5745 -0.9182 4.6827 11 6 1.9296 -0.4762 6.1437 12 6 3.4569 -0.5935 6.1676 13 7 4.0362 0.7530 6.0672 14 6 4.9450 1.1923 6.9926 15 1 5.0017 2.2427 7.2373 16 6 5.7933 0.2876 7.6160 17 7 5.9382 -0.9248 7.1247 18 14 6.7292 0.7909 9.1523 19 1 5.7658 1.1713 10.2164 20 1 7.5607 -0.3469 9.6204 21 1 7.6055 1.9486 8.8410 22 6 3.6223 1.6190 4.9547 23 6 2.0933 1.7114 4.9443 24 6 2.0323 -0.7105 -1.2305 25 6 1.7121 -2.0393 -1.4633 26 6 2.1867 -2.6563 -2.6052 27 7 2.9437 -1.9991 -3.4620 28 6 3.2727 -0.7366 -3.2703 29 6 2.8303 -0.0525 -2.1539 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.1263 -0.7996 1.2056 34 1 1.6053 -1.7198 1.2951 35 1 2.5533 -1.1728 3.7882 36 1 -0.3279 1.0218 4.0161 37 1 -0.3922 0.8206 5.7835 38 1 -1.5406 -0.9375 4.6450 39 1 1.5912 0.0515 7.0354 40 1 1.4885 -1.4727 6.1207 41 1 3.7901 -1.1985 5.3244 42 1 3.7730 -1.0587 7.1013 43 1 6.5313 -1.5568 7.5602 44 1 3.9691 1.1943 4.0126 45 1 4.0477 2.6139 5.0856 46 1 1.7686 2.2720 4.0677 47 1 1.7533 2.2185 5.8474 48 1 1.0959 -2.5840 -0.7633 49 1 1.9378 -3.6897 -2.7963 50 1 3.8951 -0.2313 -3.9940 51 1 3.1027 0.9816 -2.0027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505382814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:55 Heat of formation + Delta-G solvation = -36.062486 kcal Electronic energy + Delta-G solvation = -31822.204044 eV Core-core repulsion = 27721.793477 eV Total energy + Delta-G solvation = -4100.410567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.64498 -40.07109 -37.87784 -36.12859 -35.64579 -34.01594 -32.11087 -31.44943 -31.07867 -30.38297 -29.91616 -27.68389 -26.68242 -24.49176 -23.87959 -23.59440 -22.35877 -21.64010 -20.70638 -19.89590 -18.71249 -17.48376 -17.14673 -16.82763 -16.40374 -16.26073 -15.73322 -15.33065 -15.10392 -14.83691 -14.47428 -14.24517 -14.08570 -13.82325 -13.78079 -13.55047 -13.37291 -13.26724 -13.03513 -12.66397 -12.60242 -12.35164 -12.00476 -11.79950 -11.51499 -11.46219 -11.38758 -11.24408 -10.97200 -10.91472 -10.75542 -10.46086 -10.32099 -10.06823 -9.86179 -9.78884 -9.69601 -9.62948 -9.60196 -9.33944 -9.01909 -8.58348 -8.48734 -6.66297 -5.82746 -3.27560 0.95066 1.06653 2.93535 3.35885 3.41589 3.42796 3.45092 3.65472 4.27450 4.39650 4.42656 4.47528 4.49857 4.82118 4.92907 4.95835 4.99189 5.02910 5.26243 5.30652 5.36426 5.45130 5.50281 5.52487 5.53052 5.56786 5.61173 5.64806 5.73755 5.77876 5.88181 5.95232 5.97156 6.06944 6.23232 6.26348 6.29372 6.33702 6.51873 6.55195 6.55709 6.63098 6.79170 6.91347 7.04612 7.25262 7.55283 7.75748 7.76310 7.78613 7.93666 8.43298 8.56706 9.18412 9.80694 10.38964 11.25835 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.002772 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.490076 B =10099.873348 C =11320.670452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.522 3.478 6 O -0.549 6.549 7 N -0.699 5.699 8 C 0.194 3.806 9 C 0.063 3.937 10 O -0.567 6.567 11 C -0.143 4.143 12 C 0.174 3.826 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.153 3.847 23 C -0.142 4.142 24 C -0.029 4.029 25 C -0.168 4.168 26 C 0.097 3.903 27 N -0.493 5.493 28 C 0.098 3.902 29 C -0.169 4.169 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.402 0.598 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.369 0.631 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.087 0.913 43 H 0.254 0.746 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.134 0.866 49 H 0.154 0.846 50 H 0.154 0.846 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -1.598 -14.538 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.054 4.054 3 H 0.109 0.891 4 C -0.176 4.176 5 C 0.308 3.692 6 O -0.428 6.428 7 N -0.349 5.349 8 C 0.108 3.892 9 C -0.016 4.016 10 O -0.371 6.371 11 C -0.183 4.183 12 C 0.048 3.952 13 N -0.314 5.314 14 C -0.384 4.384 15 H 0.081 0.919 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.027 3.973 23 C -0.182 4.182 24 C -0.037 4.037 25 C -0.188 4.188 26 C -0.059 4.059 27 N -0.202 5.202 28 C -0.059 4.059 29 C -0.189 4.189 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.237 0.763 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.215 0.785 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.152 0.848 49 H 0.171 0.829 50 H 0.171 0.829 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.720 -1.607 -15.267 19.313 hybrid contribution -0.022 0.352 1.671 1.708 sum -11.742 -1.255 -13.595 18.008 Atomic orbital electron populations 1.21936 0.93284 1.01736 1.03339 1.19905 0.96966 0.99325 0.89209 0.89090 1.21729 1.03123 1.00215 0.92498 1.20295 0.79111 0.85292 0.84483 1.90556 1.41354 1.24272 1.86631 1.45968 1.51623 1.32373 1.04947 1.20267 0.90085 0.93527 0.85285 1.22746 0.94346 0.84365 1.00100 1.86484 1.24495 1.29363 1.96712 1.22461 1.01374 0.99207 0.95225 1.20717 0.86209 0.86844 1.01407 1.44022 1.47882 1.12842 1.26620 1.19128 1.10811 0.93463 1.15004 0.91900 1.25097 0.97225 0.96956 1.00102 1.69983 1.39371 1.05922 1.39471 0.86369 0.79545 0.77433 0.83376 1.21013 1.21634 1.20890 1.20787 0.90691 0.94922 0.90902 1.22376 0.99328 0.94669 1.01850 1.20409 0.93890 0.93879 0.95489 1.22034 1.02094 0.95310 0.99344 1.22747 0.93137 0.99892 0.90154 1.67666 1.12497 1.09242 1.30778 1.22751 0.96860 0.90391 0.95866 1.22133 0.99368 1.01730 0.95686 0.93150 0.89708 0.93050 0.88940 0.88904 0.76286 0.91655 0.93757 0.78542 0.91414 0.91942 0.96571 0.89524 0.93578 0.96619 0.92939 0.90877 0.91800 0.84836 0.82902 0.82866 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.76 37.16 0.33 -1.17 16 2 C -0.04 -0.37 2.24 -91.77 -0.21 -0.57 16 3 H 0.09 1.04 7.76 -51.93 -0.40 0.64 16 4 C -0.14 -1.50 4.93 -27.88 -0.14 -1.64 16 5 C 0.52 7.40 6.96 -10.99 -0.08 7.33 16 6 O -0.55 -8.75 10.28 5.56 0.06 -8.69 16 7 N -0.70 -10.67 3.90 -47.57 -0.19 -10.85 16 8 C 0.19 3.19 0.44 -131.77 -0.06 3.14 16 9 C 0.06 0.91 5.54 37.16 0.21 1.12 16 10 O -0.57 -7.56 12.94 -35.23 -0.46 -8.02 16 11 C -0.14 -2.61 4.89 -26.61 -0.13 -2.74 16 12 C 0.17 3.90 5.00 -3.71 -0.02 3.88 16 13 N -0.59 -14.27 2.98 -172.32 -0.51 -14.78 16 14 C -0.25 -6.83 9.57 -15.06 -0.14 -6.98 16 15 H 0.06 1.67 7.87 -52.49 -0.41 1.26 16 16 C 0.00 0.14 4.95 -17.43 -0.09 0.05 16 17 N -0.90 -25.45 11.25 55.49 0.62 -24.82 16 18 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.15 3.21 6.25 -3.71 -0.02 3.19 16 23 C -0.14 -2.54 4.74 -26.61 -0.13 -2.66 16 24 C -0.03 -0.28 4.80 -104.31 -0.50 -0.78 16 25 C -0.17 -1.54 8.89 -39.44 -0.35 -1.89 16 26 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 27 N -0.49 -5.51 10.36 -13.25 -0.14 -5.65 16 28 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 29 C -0.17 -1.61 9.76 -39.44 -0.39 -2.00 16 30 H 0.05 0.46 7.50 -51.93 -0.39 0.07 16 31 H 0.08 1.04 5.95 -51.93 -0.31 0.73 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.90 7.65 -51.93 -0.40 0.50 16 35 H 0.40 6.11 7.13 -40.82 -0.29 5.82 16 36 H 0.07 0.99 6.18 -51.93 -0.32 0.67 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.37 3.29 9.12 45.56 0.42 3.71 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.09 7.80 -51.93 -0.40 0.68 16 41 H 0.02 0.37 6.84 -51.93 -0.36 0.02 16 42 H 0.09 2.21 6.19 -51.93 -0.32 1.89 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 45 H 0.05 1.11 7.94 -51.93 -0.41 0.69 16 46 H 0.07 1.30 6.39 -51.93 -0.33 0.96 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.13 1.00 7.35 -52.49 -0.39 0.62 16 49 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 50 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 51 H 0.13 1.07 8.01 -52.48 -0.42 0.65 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -31.49 395.23 -9.02 -40.52 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.24 Total: 10.24 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.10 Total: -0.24 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.21 Total: -56.10 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.40 Total: -16.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.49 -9.02 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505382814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.453 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds