Wall clock time and date at job start Wed Apr 1 2020 04:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47135 * 2 1 4 4 C 1.52997 * 109.46997 * 120.00148 * 2 1 3 5 5 C 1.50700 * 109.47142 * 295.00074 * 4 2 1 6 6 O 1.21278 * 119.99809 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99820 * 185.23561 * 7 5 4 9 9 C 1.53000 * 109.45984 * 55.06576 * 8 7 5 10 10 O 1.42906 * 109.47148 * 54.71644 * 9 8 7 11 11 C 1.53042 * 109.45040 * 175.03468 * 8 7 5 12 12 C 1.53193 * 109.31127 * 58.64540 * 11 8 7 13 13 N 1.46930 * 108.77157 * 54.63864 * 12 11 8 14 14 C 1.36940 * 120.62610 * 126.41456 * 13 12 11 15 15 H 1.08001 * 119.99558 * 210.54394 * 14 13 12 16 16 C 1.38808 * 120.00314 * 30.54469 * 14 13 12 17 17 N 1.31615 * 120.00108 * 14.92475 * 16 14 13 18 18 Si 1.86799 * 119.99784 * 194.92152 * 16 14 13 19 19 H 1.48501 * 109.46993 * 60.00405 * 18 16 14 20 20 H 1.48504 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47314 * 300.00083 * 18 16 14 22 22 C 1.46924 * 118.74071 * 306.38750 * 13 12 11 23 23 C 1.53041 * 109.45758 * 295.09657 * 8 7 5 24 24 C 1.50702 * 109.46839 * 239.99710 * 2 1 3 25 25 C 1.38651 * 120.79341 * 299.72424 * 24 2 1 26 26 C 1.38205 * 119.16206 * 179.75657 * 25 24 2 27 27 N 1.31872 * 120.76249 * 0.52740 * 26 25 24 28 28 C 1.31864 * 121.72847 * 359.74205 * 27 26 25 29 29 C 1.38203 * 120.76515 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47625 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47375 * 300.00401 * 1 2 3 32 32 H 1.09004 * 109.47152 * 59.99857 * 1 2 3 33 33 H 1.09002 * 109.47333 * 174.99401 * 4 2 1 34 34 H 1.09004 * 109.47067 * 54.99581 * 4 2 1 35 35 H 0.96994 * 120.00166 * 5.23115 * 7 5 4 36 36 H 1.09002 * 109.47305 * 294.71780 * 9 8 7 37 37 H 1.09003 * 109.47391 * 174.71220 * 9 8 7 38 38 H 0.96696 * 113.99916 * 180.02562 * 10 9 8 39 39 H 1.08993 * 109.49321 * 178.60147 * 11 8 7 40 40 H 1.09004 * 109.49454 * 298.69694 * 11 8 7 41 41 H 1.08994 * 109.58981 * 294.84864 * 12 11 8 42 42 H 1.09004 * 109.58439 * 174.42348 * 12 11 8 43 43 H 0.96992 * 120.00077 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.58362 * 293.82324 * 22 13 12 45 45 H 1.08996 * 109.70606 * 173.46923 * 22 13 12 46 46 H 1.09002 * 109.50136 * 61.31131 * 23 8 7 47 47 H 1.09005 * 109.49477 * 181.40589 * 23 8 7 48 48 H 1.07996 * 120.41816 * 0.02562 * 25 24 2 49 49 H 1.07997 * 119.61896 * 180.29529 * 26 25 24 50 50 H 1.08006 * 119.62176 * 179.97438 * 28 27 26 51 51 H 1.08005 * 120.42195 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0873 2.3632 7 7 1.9853 -0.3915 3.7001 8 6 1.5012 0.3010 4.8969 9 6 -0.0256 0.3904 4.8516 10 8 -0.5745 -0.9182 4.6827 11 6 1.9296 -0.4762 6.1437 12 6 3.4569 -0.5935 6.1676 13 7 4.0362 0.7530 6.0672 14 6 4.9450 1.1923 6.9926 15 1 5.0017 2.2427 7.2373 16 6 5.7933 0.2876 7.6160 17 7 5.9382 -0.9248 7.1247 18 14 6.7292 0.7909 9.1523 19 1 5.7658 1.1713 10.2164 20 1 7.5607 -0.3469 9.6204 21 1 7.6055 1.9486 8.8410 22 6 3.6223 1.6190 4.9547 23 6 2.0933 1.7114 4.9443 24 6 2.0323 -0.7105 -1.2305 25 6 1.7121 -2.0393 -1.4633 26 6 2.1867 -2.6563 -2.6052 27 7 2.9437 -1.9991 -3.4620 28 6 3.2727 -0.7366 -3.2703 29 6 2.8303 -0.0525 -2.1539 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.1263 -0.7996 1.2056 34 1 1.6053 -1.7198 1.2951 35 1 2.5533 -1.1728 3.7882 36 1 -0.3279 1.0218 4.0161 37 1 -0.3922 0.8206 5.7835 38 1 -1.5406 -0.9375 4.6450 39 1 1.5912 0.0515 7.0354 40 1 1.4885 -1.4727 6.1207 41 1 3.7901 -1.1985 5.3244 42 1 3.7730 -1.0587 7.1013 43 1 6.5313 -1.5568 7.5602 44 1 3.9691 1.1943 4.0126 45 1 4.0477 2.6139 5.0856 46 1 1.7686 2.2720 4.0677 47 1 1.7533 2.2185 5.8474 48 1 1.0959 -2.5840 -0.7633 49 1 1.9378 -3.6897 -2.7963 50 1 3.8951 -0.2313 -3.9940 51 1 3.1027 0.9816 -2.0027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505382814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:54 Heat of formation + Delta-G solvation = -56.854896 kcal Electronic energy + Delta-G solvation = -31823.105670 eV Core-core repulsion = 27721.793477 eV Total energy + Delta-G solvation = -4101.312193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65675 -41.04210 -39.16474 -37.42735 -36.55942 -35.52362 -33.70074 -32.33297 -32.07357 -31.74559 -31.44508 -28.74705 -28.17143 -25.62742 -25.26629 -24.31473 -23.97462 -22.87386 -22.07550 -20.92031 -20.12369 -18.81943 -18.39722 -18.06327 -17.26932 -17.18725 -16.82712 -16.54218 -16.35205 -16.25614 -15.77096 -15.43772 -15.32965 -15.06580 -14.92124 -14.64489 -14.59144 -14.38860 -14.32495 -13.98177 -13.84044 -13.39405 -13.23551 -13.18754 -12.97968 -12.71216 -12.60744 -12.55270 -12.38370 -12.28019 -12.23279 -11.97809 -11.82338 -11.72253 -11.42473 -11.28045 -10.97919 -10.54387 -10.49856 -10.38267 -10.21094 -10.03368 -9.81052 -8.62867 -7.87663 -5.35164 0.25472 0.32488 1.47260 1.48625 1.55382 1.81995 2.32474 2.51007 2.91664 3.26806 3.33729 3.52498 3.65233 3.71052 3.72545 3.87556 4.01726 4.03791 4.17475 4.20544 4.25872 4.28453 4.32135 4.46064 4.50182 4.57846 4.66739 4.69179 4.73898 4.75954 4.77800 4.80658 4.92460 4.94779 4.98606 5.05135 5.11222 5.13452 5.18957 5.22972 5.28530 5.42206 5.45873 5.53971 5.64125 5.71509 5.76783 5.83443 6.40506 6.74718 6.93198 7.07595 7.16315 7.41621 7.85473 8.38550 9.17970 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.002772 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.490076 B =10099.873348 C =11320.670452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 H 0.077 0.923 4 C -0.129 4.129 5 C 0.520 3.480 6 O -0.565 6.565 7 N -0.703 5.703 8 C 0.195 3.805 9 C 0.076 3.924 10 O -0.575 6.575 11 C -0.126 4.126 12 C 0.183 3.817 13 N -0.606 5.606 14 C -0.267 4.267 15 H 0.060 0.940 16 C -0.043 4.043 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.155 3.845 23 C -0.129 4.129 24 C -0.037 4.037 25 C -0.167 4.167 26 C 0.088 3.912 27 N -0.518 5.518 28 C 0.088 3.912 29 C -0.176 4.176 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.402 0.598 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.391 0.609 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.007 0.993 42 H 0.051 0.949 43 H 0.250 0.750 44 H 0.010 0.990 45 H 0.045 0.955 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.152 0.848 49 H 0.175 0.825 50 H 0.173 0.827 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.613 -1.869 -15.038 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 H 0.096 0.904 4 C -0.168 4.168 5 C 0.308 3.692 6 O -0.446 6.446 7 N -0.353 5.353 8 C 0.109 3.891 9 C -0.003 4.003 10 O -0.382 6.382 11 C -0.166 4.166 12 C 0.057 3.943 13 N -0.329 5.329 14 C -0.398 4.398 15 H 0.078 0.922 16 C -0.239 4.239 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.204 1.204 22 C 0.029 3.971 23 C -0.169 4.169 24 C -0.045 4.045 25 C -0.187 4.187 26 C -0.068 4.068 27 N -0.228 5.228 28 C -0.068 4.068 29 C -0.196 4.196 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.237 0.763 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.240 0.760 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.170 0.830 49 H 0.192 0.808 50 H 0.190 0.810 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.026 -1.866 -15.785 20.551 hybrid contribution 0.363 0.447 1.770 1.861 sum -12.663 -1.418 -14.016 18.942 Atomic orbital electron populations 1.21855 0.93016 1.02312 1.02490 1.19779 0.97062 0.98577 0.89171 0.90414 1.21722 1.03286 1.00715 0.91115 1.20776 0.78453 0.85184 0.84790 1.90554 1.42058 1.25084 1.86856 1.45987 1.51891 1.32381 1.05052 1.20148 0.91804 0.92173 0.85004 1.22471 0.92493 0.84914 1.00442 1.86424 1.26644 1.28459 1.96683 1.22216 0.97972 1.00190 0.96174 1.20521 0.88832 0.85767 0.99132 1.44232 1.47872 1.13654 1.27179 1.19407 1.11201 0.93525 1.15637 0.92197 1.25782 0.98353 0.97076 1.02695 1.70122 1.40098 1.06711 1.40539 0.85401 0.78293 0.76907 0.80160 1.20453 1.21909 1.20427 1.20815 0.92861 0.93828 0.89556 1.22192 0.96763 0.95970 1.01978 1.20418 0.94363 0.94362 0.95340 1.22225 1.01923 0.95028 0.99511 1.23157 0.92722 1.00892 0.90037 1.67689 1.13401 1.09984 1.31732 1.23097 0.97049 0.90253 0.96394 1.22321 0.99270 1.02384 0.95642 0.91845 0.91620 0.92733 0.88827 0.86937 0.76313 0.92056 0.92767 0.76041 0.91877 0.90745 0.97485 0.93021 0.94047 0.97228 0.93685 0.90452 0.91814 0.83007 0.80792 0.81039 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.76 71.98 0.63 -1.99 16 2 C -0.03 -0.52 2.24 -11.54 -0.03 -0.55 16 3 H 0.08 1.71 7.76 -2.39 -0.02 1.69 16 4 C -0.13 -2.62 4.93 29.85 0.15 -2.48 16 5 C 0.52 14.05 6.96 87.66 0.61 14.66 16 6 O -0.57 -17.32 10.28 -3.02 -0.03 -17.35 16 7 N -0.70 -20.63 3.90 -422.79 -1.65 -22.28 16 8 C 0.20 6.17 0.44 3.63 0.00 6.17 16 9 C 0.08 2.02 5.54 71.98 0.40 2.42 16 10 O -0.58 -13.75 12.94 -148.98 -1.93 -15.68 16 11 C -0.13 -4.51 4.89 30.67 0.15 -4.36 16 12 C 0.18 8.30 5.00 86.36 0.43 8.74 16 13 N -0.61 -29.60 2.98 -699.10 -2.09 -31.68 16 14 C -0.27 -14.54 9.57 84.03 0.80 -13.73 16 15 H 0.06 3.22 7.87 -2.91 -0.02 3.20 16 16 C -0.04 -2.35 4.95 84.86 0.42 -1.93 16 17 N -0.93 -53.30 11.25 21.65 0.24 -53.06 16 18 Si 0.96 44.25 29.58 68.60 2.03 46.28 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 C 0.16 6.51 6.25 86.36 0.54 7.05 16 23 C -0.13 -4.50 4.74 30.67 0.15 -4.36 16 24 C -0.04 -0.67 4.80 -19.66 -0.09 -0.76 16 25 C -0.17 -2.71 8.89 22.36 0.20 -2.51 16 26 C 0.09 1.53 11.18 84.68 0.95 2.48 16 27 N -0.52 -10.96 10.36 -195.84 -2.03 -12.99 16 28 C 0.09 1.62 11.18 84.68 0.95 2.57 16 29 C -0.18 -3.16 9.76 22.36 0.22 -2.94 16 30 H 0.06 1.01 7.50 -2.39 -0.02 0.99 16 31 H 0.06 1.51 5.95 -2.39 -0.01 1.50 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.11 1.87 7.65 -2.38 -0.02 1.85 16 35 H 0.40 11.85 7.13 -92.71 -0.66 11.19 16 36 H 0.06 1.72 6.18 -2.39 -0.01 1.71 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.39 5.74 9.12 -74.06 -0.68 5.06 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.49 7.80 -2.38 -0.02 2.47 16 41 H 0.01 0.33 6.84 -2.39 -0.02 0.32 16 42 H 0.05 2.70 6.19 -2.39 -0.01 2.69 16 43 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.01 0.42 7.74 -2.39 -0.02 0.40 16 45 H 0.04 1.92 7.94 -2.39 -0.02 1.90 16 46 H 0.08 2.66 6.39 -2.39 -0.02 2.65 16 47 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 48 H 0.15 1.82 7.35 -2.91 -0.02 1.80 16 49 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 50 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 51 H 0.15 2.17 8.01 -2.91 -0.02 2.14 16 Total: -1.00 -67.39 395.23 0.64 -66.75 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.38 Total: 31.52 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.47 Total: 8.48 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -5.52 Total: -120.01 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.96 Total: -33.03 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.39 0.64 -66.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505382814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.899 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds