Wall clock time and date at job start Wed Apr 1 2020 04:25:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08995 * 109.47135 * 2 1
4 4 C 1.52997 * 109.46997 * 120.00148 * 2 1 3
5 5 C 1.50700 * 109.47142 * 295.00074 * 4 2 1
6 6 O 1.21278 * 119.99809 * 359.97438 * 5 4 2
7 7 N 1.34777 * 119.99819 * 180.02562 * 5 4 2
8 8 C 1.46503 * 119.99820 * 185.23561 * 7 5 4
9 9 C 1.53000 * 109.45984 * 55.06576 * 8 7 5
10 10 O 1.42906 * 109.47148 * 54.71644 * 9 8 7
11 11 C 1.53042 * 109.45040 * 175.03468 * 8 7 5
12 12 C 1.53193 * 109.31127 * 58.64540 * 11 8 7
13 13 N 1.46930 * 108.77157 * 54.63864 * 12 11 8
14 14 C 1.36940 * 120.62610 * 126.41456 * 13 12 11
15 15 H 1.08001 * 119.99558 * 210.54394 * 14 13 12
16 16 C 1.38808 * 120.00314 * 30.54469 * 14 13 12
17 17 N 1.31615 * 120.00108 * 14.92475 * 16 14 13
18 18 Si 1.86799 * 119.99784 * 194.92152 * 16 14 13
19 19 H 1.48501 * 109.46993 * 60.00405 * 18 16 14
20 20 H 1.48504 * 109.47054 * 180.02562 * 18 16 14
21 21 H 1.48495 * 109.47314 * 300.00083 * 18 16 14
22 22 C 1.46924 * 118.74071 * 306.38750 * 13 12 11
23 23 C 1.53041 * 109.45758 * 295.09657 * 8 7 5
24 24 C 1.50702 * 109.46839 * 239.99710 * 2 1 3
25 25 C 1.38651 * 120.79341 * 299.72424 * 24 2 1
26 26 C 1.38205 * 119.16206 * 179.75657 * 25 24 2
27 27 N 1.31872 * 120.76249 * 0.52740 * 26 25 24
28 28 C 1.31864 * 121.72847 * 359.74205 * 27 26 25
29 29 C 1.38203 * 120.76515 * 359.97438 * 28 27 26
30 30 H 1.08996 * 109.47625 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47375 * 300.00401 * 1 2 3
32 32 H 1.09004 * 109.47152 * 59.99857 * 1 2 3
33 33 H 1.09002 * 109.47333 * 174.99401 * 4 2 1
34 34 H 1.09004 * 109.47067 * 54.99581 * 4 2 1
35 35 H 0.96994 * 120.00166 * 5.23115 * 7 5 4
36 36 H 1.09002 * 109.47305 * 294.71780 * 9 8 7
37 37 H 1.09003 * 109.47391 * 174.71220 * 9 8 7
38 38 H 0.96696 * 113.99916 * 180.02562 * 10 9 8
39 39 H 1.08993 * 109.49321 * 178.60147 * 11 8 7
40 40 H 1.09004 * 109.49454 * 298.69694 * 11 8 7
41 41 H 1.08994 * 109.58981 * 294.84864 * 12 11 8
42 42 H 1.09004 * 109.58439 * 174.42348 * 12 11 8
43 43 H 0.96992 * 120.00077 * 179.97438 * 17 16 14
44 44 H 1.09002 * 109.58362 * 293.82324 * 22 13 12
45 45 H 1.08996 * 109.70606 * 173.46923 * 22 13 12
46 46 H 1.09002 * 109.50136 * 61.31131 * 23 8 7
47 47 H 1.09005 * 109.49477 * 181.40589 * 23 8 7
48 48 H 1.07996 * 120.41816 * 0.02562 * 25 24 2
49 49 H 1.07997 * 119.61896 * 180.29529 * 26 25 24
50 50 H 1.08006 * 119.62176 * 179.97438 * 28 27 26
51 51 H 1.08005 * 120.42195 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6413 0.0570 2.4766
6 8 1.0117 1.0873 2.3632
7 7 1.9853 -0.3915 3.7001
8 6 1.5012 0.3010 4.8969
9 6 -0.0256 0.3904 4.8516
10 8 -0.5745 -0.9182 4.6827
11 6 1.9296 -0.4762 6.1437
12 6 3.4569 -0.5935 6.1676
13 7 4.0362 0.7530 6.0672
14 6 4.9450 1.1923 6.9926
15 1 5.0017 2.2427 7.2373
16 6 5.7933 0.2876 7.6160
17 7 5.9382 -0.9248 7.1247
18 14 6.7292 0.7909 9.1523
19 1 5.7658 1.1713 10.2164
20 1 7.5607 -0.3469 9.6204
21 1 7.6055 1.9486 8.8410
22 6 3.6223 1.6190 4.9547
23 6 2.0933 1.7114 4.9443
24 6 2.0323 -0.7105 -1.2305
25 6 1.7121 -2.0393 -1.4633
26 6 2.1867 -2.6563 -2.6052
27 7 2.9437 -1.9991 -3.4620
28 6 3.2727 -0.7366 -3.2703
29 6 2.8303 -0.0525 -2.1539
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 3.1263 -0.7996 1.2056
34 1 1.6053 -1.7198 1.2951
35 1 2.5533 -1.1728 3.7882
36 1 -0.3279 1.0218 4.0161
37 1 -0.3922 0.8206 5.7835
38 1 -1.5406 -0.9375 4.6450
39 1 1.5912 0.0515 7.0354
40 1 1.4885 -1.4727 6.1207
41 1 3.7901 -1.1985 5.3244
42 1 3.7730 -1.0587 7.1013
43 1 6.5313 -1.5568 7.5602
44 1 3.9691 1.1943 4.0126
45 1 4.0477 2.6139 5.0856
46 1 1.7686 2.2720 4.0677
47 1 1.7533 2.2185 5.8474
48 1 1.0959 -2.5840 -0.7633
49 1 1.9378 -3.6897 -2.7963
50 1 3.8951 -0.2313 -3.9940
51 1 3.1027 0.9816 -2.0027
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001505382814.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:54
Heat of formation + Delta-G solvation = -56.854896 kcal
Electronic energy + Delta-G solvation = -31823.105670 eV
Core-core repulsion = 27721.793477 eV
Total energy + Delta-G solvation = -4101.312193 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.65675 -41.04210 -39.16474 -37.42735 -36.55942 -35.52362 -33.70074 -32.33297
-32.07357 -31.74559 -31.44508 -28.74705 -28.17143 -25.62742 -25.26629 -24.31473
-23.97462 -22.87386 -22.07550 -20.92031 -20.12369 -18.81943 -18.39722 -18.06327
-17.26932 -17.18725 -16.82712 -16.54218 -16.35205 -16.25614 -15.77096 -15.43772
-15.32965 -15.06580 -14.92124 -14.64489 -14.59144 -14.38860 -14.32495 -13.98177
-13.84044 -13.39405 -13.23551 -13.18754 -12.97968 -12.71216 -12.60744 -12.55270
-12.38370 -12.28019 -12.23279 -11.97809 -11.82338 -11.72253 -11.42473 -11.28045
-10.97919 -10.54387 -10.49856 -10.38267 -10.21094 -10.03368 -9.81052 -8.62867
-7.87663 -5.35164 0.25472 0.32488 1.47260 1.48625 1.55382 1.81995
2.32474 2.51007 2.91664 3.26806 3.33729 3.52498 3.65233 3.71052
3.72545 3.87556 4.01726 4.03791 4.17475 4.20544 4.25872 4.28453
4.32135 4.46064 4.50182 4.57846 4.66739 4.69179 4.73898 4.75954
4.77800 4.80658 4.92460 4.94779 4.98606 5.05135 5.11222 5.13452
5.18957 5.22972 5.28530 5.42206 5.45873 5.53971 5.64125 5.71509
5.76783 5.83443 6.40506 6.74718 6.93198 7.07595 7.16315 7.41621
7.85473 8.38550 9.17970
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012838 B = 0.002772 C = 0.002473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2180.490076 B =10099.873348 C =11320.670452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.027 4.027
3 H 0.077 0.923
4 C -0.129 4.129
5 C 0.520 3.480
6 O -0.565 6.565
7 N -0.703 5.703
8 C 0.195 3.805
9 C 0.076 3.924
10 O -0.575 6.575
11 C -0.126 4.126
12 C 0.183 3.817
13 N -0.606 5.606
14 C -0.267 4.267
15 H 0.060 0.940
16 C -0.043 4.043
17 N -0.929 5.929
18 Si 0.964 3.036
19 H -0.278 1.278
20 H -0.293 1.293
21 H -0.278 1.278
22 C 0.155 3.845
23 C -0.129 4.129
24 C -0.037 4.037
25 C -0.167 4.167
26 C 0.088 3.912
27 N -0.518 5.518
28 C 0.088 3.912
29 C -0.176 4.176
30 H 0.063 0.937
31 H 0.065 0.935
32 H 0.054 0.946
33 H 0.093 0.907
34 H 0.112 0.888
35 H 0.402 0.598
36 H 0.061 0.939
37 H 0.054 0.946
38 H 0.391 0.609
39 H 0.063 0.937
40 H 0.074 0.926
41 H 0.007 0.993
42 H 0.051 0.949
43 H 0.250 0.750
44 H 0.010 0.990
45 H 0.045 0.955
46 H 0.077 0.923
47 H 0.063 0.937
48 H 0.152 0.848
49 H 0.175 0.825
50 H 0.173 0.827
51 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.613 -1.869 -15.038 20.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.046 4.046
3 H 0.096 0.904
4 C -0.168 4.168
5 C 0.308 3.692
6 O -0.446 6.446
7 N -0.353 5.353
8 C 0.109 3.891
9 C -0.003 4.003
10 O -0.382 6.382
11 C -0.166 4.166
12 C 0.057 3.943
13 N -0.329 5.329
14 C -0.398 4.398
15 H 0.078 0.922
16 C -0.239 4.239
17 N -0.575 5.575
18 Si 0.792 3.208
19 H -0.205 1.205
20 H -0.219 1.219
21 H -0.204 1.204
22 C 0.029 3.971
23 C -0.169 4.169
24 C -0.045 4.045
25 C -0.187 4.187
26 C -0.068 4.068
27 N -0.228 5.228
28 C -0.068 4.068
29 C -0.196 4.196
30 H 0.082 0.918
31 H 0.084 0.916
32 H 0.073 0.927
33 H 0.112 0.888
34 H 0.131 0.869
35 H 0.237 0.763
36 H 0.079 0.921
37 H 0.072 0.928
38 H 0.240 0.760
39 H 0.081 0.919
40 H 0.093 0.907
41 H 0.025 0.975
42 H 0.070 0.930
43 H 0.060 0.940
44 H 0.028 0.972
45 H 0.063 0.937
46 H 0.095 0.905
47 H 0.082 0.918
48 H 0.170 0.830
49 H 0.192 0.808
50 H 0.190 0.810
51 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -13.026 -1.866 -15.785 20.551
hybrid contribution 0.363 0.447 1.770 1.861
sum -12.663 -1.418 -14.016 18.942
Atomic orbital electron populations
1.21855 0.93016 1.02312 1.02490 1.19779 0.97062 0.98577 0.89171
0.90414 1.21722 1.03286 1.00715 0.91115 1.20776 0.78453 0.85184
0.84790 1.90554 1.42058 1.25084 1.86856 1.45987 1.51891 1.32381
1.05052 1.20148 0.91804 0.92173 0.85004 1.22471 0.92493 0.84914
1.00442 1.86424 1.26644 1.28459 1.96683 1.22216 0.97972 1.00190
0.96174 1.20521 0.88832 0.85767 0.99132 1.44232 1.47872 1.13654
1.27179 1.19407 1.11201 0.93525 1.15637 0.92197 1.25782 0.98353
0.97076 1.02695 1.70122 1.40098 1.06711 1.40539 0.85401 0.78293
0.76907 0.80160 1.20453 1.21909 1.20427 1.20815 0.92861 0.93828
0.89556 1.22192 0.96763 0.95970 1.01978 1.20418 0.94363 0.94362
0.95340 1.22225 1.01923 0.95028 0.99511 1.23157 0.92722 1.00892
0.90037 1.67689 1.13401 1.09984 1.31732 1.23097 0.97049 0.90253
0.96394 1.22321 0.99270 1.02384 0.95642 0.91845 0.91620 0.92733
0.88827 0.86937 0.76313 0.92056 0.92767 0.76041 0.91877 0.90745
0.97485 0.93021 0.94047 0.97228 0.93685 0.90452 0.91814 0.83007
0.80792 0.81039 0.83639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.62 8.76 71.98 0.63 -1.99 16
2 C -0.03 -0.52 2.24 -11.54 -0.03 -0.55 16
3 H 0.08 1.71 7.76 -2.39 -0.02 1.69 16
4 C -0.13 -2.62 4.93 29.85 0.15 -2.48 16
5 C 0.52 14.05 6.96 87.66 0.61 14.66 16
6 O -0.57 -17.32 10.28 -3.02 -0.03 -17.35 16
7 N -0.70 -20.63 3.90 -422.79 -1.65 -22.28 16
8 C 0.20 6.17 0.44 3.63 0.00 6.17 16
9 C 0.08 2.02 5.54 71.98 0.40 2.42 16
10 O -0.58 -13.75 12.94 -148.98 -1.93 -15.68 16
11 C -0.13 -4.51 4.89 30.67 0.15 -4.36 16
12 C 0.18 8.30 5.00 86.36 0.43 8.74 16
13 N -0.61 -29.60 2.98 -699.10 -2.09 -31.68 16
14 C -0.27 -14.54 9.57 84.03 0.80 -13.73 16
15 H 0.06 3.22 7.87 -2.91 -0.02 3.20 16
16 C -0.04 -2.35 4.95 84.86 0.42 -1.93 16
17 N -0.93 -53.30 11.25 21.65 0.24 -53.06 16
18 Si 0.96 44.25 29.58 68.60 2.03 46.28 16
19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16
20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16
21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16
22 C 0.16 6.51 6.25 86.36 0.54 7.05 16
23 C -0.13 -4.50 4.74 30.67 0.15 -4.36 16
24 C -0.04 -0.67 4.80 -19.66 -0.09 -0.76 16
25 C -0.17 -2.71 8.89 22.36 0.20 -2.51 16
26 C 0.09 1.53 11.18 84.68 0.95 2.48 16
27 N -0.52 -10.96 10.36 -195.84 -2.03 -12.99 16
28 C 0.09 1.62 11.18 84.68 0.95 2.57 16
29 C -0.18 -3.16 9.76 22.36 0.22 -2.94 16
30 H 0.06 1.01 7.50 -2.39 -0.02 0.99 16
31 H 0.06 1.51 5.95 -2.39 -0.01 1.50 16
32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16
33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
34 H 0.11 1.87 7.65 -2.38 -0.02 1.85 16
35 H 0.40 11.85 7.13 -92.71 -0.66 11.19 16
36 H 0.06 1.72 6.18 -2.39 -0.01 1.71 16
37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
38 H 0.39 5.74 9.12 -74.06 -0.68 5.06 16
39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16
40 H 0.07 2.49 7.80 -2.38 -0.02 2.47 16
41 H 0.01 0.33 6.84 -2.39 -0.02 0.32 16
42 H 0.05 2.70 6.19 -2.39 -0.01 2.69 16
43 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16
44 H 0.01 0.42 7.74 -2.39 -0.02 0.40 16
45 H 0.04 1.92 7.94 -2.39 -0.02 1.90 16
46 H 0.08 2.66 6.39 -2.39 -0.02 2.65 16
47 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16
48 H 0.15 1.82 7.35 -2.91 -0.02 1.80 16
49 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16
50 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16
51 H 0.15 2.17 8.01 -2.91 -0.02 2.14 16
Total: -1.00 -67.39 395.23 0.64 -66.75
By element:
Atomic # 1 Polarization: 31.90 SS G_CDS: -0.38 Total: 31.52 kcal
Atomic # 6 Polarization: 2.01 SS G_CDS: 6.47 Total: 8.48 kcal
Atomic # 7 Polarization: -114.49 SS G_CDS: -5.52 Total: -120.01 kcal
Atomic # 8 Polarization: -31.07 SS G_CDS: -1.96 Total: -33.03 kcal
Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal
Total: -67.39 0.64 -66.75 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001505382814.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.899 kcal
(2) G-P(sol) polarization free energy of solvation -67.390 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.855 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds