Wall clock time and date at job start Wed Apr 1 2020 04:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46900 * 2 1 4 4 C 1.50701 * 109.47056 * 119.99747 * 2 1 3 5 5 C 1.38604 * 119.55005 * 275.00093 * 4 2 1 6 6 C 1.38590 * 119.35372 * 180.02562 * 5 4 2 7 7 C 1.38631 * 118.48753 * 359.97438 * 6 5 4 8 8 C 1.39278 * 119.05719 * 0.02562 * 7 6 5 9 9 C 1.48163 * 119.71651 * 179.97438 * 8 7 6 10 10 O 1.21516 * 120.00384 * 12.66278 * 9 8 7 11 11 N 1.34776 * 119.99849 * 192.66574 * 9 8 7 12 12 C 1.47157 * 120.98298 * 1.21521 * 11 9 8 13 13 C 1.53290 * 108.38404 * 129.44433 * 12 11 9 14 14 O 1.42960 * 109.22623 * 52.30395 * 13 12 11 15 15 C 1.42967 * 114.16421 * 297.42014 * 14 13 12 16 16 H 1.09006 * 109.55180 * 302.62698 * 15 14 13 17 17 C 1.52999 * 109.50980 * 182.50661 * 15 14 13 18 18 H 1.09002 * 109.47062 * 185.25690 * 17 15 14 19 19 C 1.53009 * 109.46794 * 305.24887 * 17 15 14 20 20 N 1.46496 * 109.47649 * 65.25110 * 17 15 14 21 21 C 1.36931 * 120.00373 * 154.99893 * 20 17 15 22 22 H 1.08006 * 119.99989 * 0.02562 * 21 20 17 23 23 C 1.38816 * 120.00184 * 180.27342 * 21 20 17 24 24 N 1.31619 * 119.99966 * 359.73116 * 23 21 20 25 25 Si 1.86796 * 119.99917 * 179.72329 * 23 21 20 26 26 H 1.48500 * 109.47025 * 90.00221 * 25 23 21 27 27 H 1.48499 * 109.47244 * 210.00103 * 25 23 21 28 28 H 1.48506 * 109.47512 * 330.00387 * 25 23 21 29 29 C 1.47151 * 120.98230 * 181.19378 * 11 9 8 30 30 N 1.31495 * 119.55214 * 95.29537 * 4 2 1 31 31 H 1.08997 * 109.47239 * 299.99746 * 1 2 3 32 32 H 1.08997 * 109.47270 * 60.00344 * 1 2 3 33 33 H 1.09001 * 109.46762 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47214 * 239.99706 * 2 1 3 35 35 H 1.09005 * 109.47149 * 299.99798 * 3 2 1 36 36 H 1.08995 * 109.47427 * 59.99837 * 3 2 1 37 37 H 1.09009 * 109.46928 * 179.97438 * 3 2 1 38 38 H 1.08007 * 120.32179 * 0.04631 * 5 4 2 39 39 H 1.08000 * 120.75644 * 179.97438 * 6 5 4 40 40 H 1.07993 * 120.46862 * 180.02562 * 7 6 5 41 41 H 1.08995 * 109.68210 * 249.16851 * 12 11 9 42 42 H 1.08996 * 109.67945 * 9.71956 * 12 11 9 43 43 H 1.09003 * 109.50951 * 172.22834 * 13 12 11 44 44 H 1.09006 * 109.51028 * 292.37724 * 13 12 11 45 45 H 1.08994 * 109.47125 * 299.99944 * 19 17 15 46 46 H 1.08993 * 109.46863 * 60.00635 * 19 17 15 47 47 H 1.08998 * 109.46609 * 180.02562 * 19 17 15 48 48 H 0.97008 * 119.99803 * 335.00041 * 20 17 15 49 49 H 0.96994 * 120.00132 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.68469 * 110.83643 * 29 11 9 51 51 H 1.09000 * 109.71608 * 350.29573 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1611 -0.0098 2.4195 6 6 2.6240 -0.6670 3.5485 7 6 2.9433 -2.0121 3.4463 8 6 2.7892 -2.6526 2.2192 9 6 3.1266 -4.0898 2.0933 10 8 3.3127 -4.7598 3.0899 11 7 3.2273 -4.6540 0.8735 12 6 3.0326 -3.8571 -0.3482 13 6 4.2202 -4.1089 -1.2841 14 8 4.3869 -5.5173 -1.4647 15 6 4.6988 -6.2284 -0.2643 16 1 5.6056 -5.8165 0.1786 17 6 4.9148 -7.7080 -0.5883 18 1 5.0601 -8.2652 0.3372 19 6 3.6893 -8.2530 -1.3246 20 7 6.0996 -7.8540 -1.4374 21 6 6.7938 -9.0343 -1.4472 22 1 6.4675 -9.8578 -0.8292 23 6 7.9198 -9.1708 -2.2475 24 7 8.3171 -8.1674 -3.0010 25 14 8.8711 -10.7783 -2.2549 26 1 8.3217 -11.6738 -3.3045 27 1 10.3031 -10.5048 -2.5375 28 1 8.7448 -11.4345 -0.9287 29 6 3.5356 -6.0851 0.7239 30 7 2.3481 -1.9849 1.1601 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.1301 1.4425 0.0005 38 1 1.9029 1.0379 2.4658 39 1 2.7334 -0.1431 4.4866 40 1 3.3063 -2.5556 4.3060 41 1 2.1076 -4.1586 -0.8396 42 1 2.9848 -2.7987 -0.0923 43 1 4.0298 -3.6382 -2.2486 44 1 5.1251 -3.6885 -0.8452 45 1 2.8078 -8.1444 -0.6928 46 1 3.5440 -7.6959 -2.2501 47 1 3.8431 -9.3072 -1.5551 48 1 6.3925 -7.1145 -1.9928 49 1 9.1041 -8.2626 -3.5600 50 1 2.6613 -6.6109 0.3404 51 1 3.8208 -6.5027 1.6895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506839798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:57 Heat of formation + Delta-G solvation = -14.018205 kcal Electronic energy + Delta-G solvation = -31319.588697 eV Core-core repulsion = 27220.134042 eV Total energy + Delta-G solvation = -4099.454655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.31258 -39.81074 -38.28747 -35.95922 -35.49192 -34.55962 -33.09480 -32.34797 -30.81159 -30.09743 -28.39608 -27.72447 -27.26134 -25.12323 -24.36822 -24.30384 -23.30928 -22.30514 -21.13294 -19.65319 -19.39588 -17.72126 -17.34762 -17.10211 -16.47785 -16.20851 -15.74912 -15.60576 -15.17545 -15.10815 -14.70287 -14.50196 -14.43955 -14.17036 -14.02933 -13.72275 -13.36230 -13.26211 -13.04050 -12.85077 -12.73221 -12.51443 -12.38967 -12.16027 -11.98786 -11.64425 -11.60169 -11.37151 -11.22827 -11.03913 -10.79261 -10.68185 -10.51496 -10.40100 -10.30089 -10.23276 -9.95113 -9.74252 -9.61333 -9.40960 -9.09548 -8.84274 -8.36848 -6.88018 -5.68742 -2.97194 0.30636 0.76135 2.51750 2.78255 3.43110 3.48320 3.53227 3.54908 3.57110 4.09445 4.15542 4.29419 4.53036 4.58660 4.61104 4.63414 4.72718 4.79780 4.89943 5.00553 5.16643 5.21258 5.24326 5.31902 5.35415 5.38610 5.42173 5.44848 5.52222 5.60778 5.63480 5.71078 5.76454 5.79203 5.81884 5.83908 5.91085 5.98272 6.05330 6.11020 6.24873 6.31491 6.53392 6.57650 6.72134 6.88603 7.21303 7.25011 7.38785 7.60501 7.76307 8.00898 8.49535 9.61227 10.19590 10.56401 11.53821 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002349 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.356404 B =11916.841131 C =12459.173810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C -0.149 4.149 4 C 0.131 3.869 5 C -0.149 4.149 6 C -0.075 4.075 7 C -0.116 4.116 8 C 0.091 3.909 9 C 0.567 3.433 10 O -0.536 6.536 11 N -0.587 5.587 12 C 0.033 3.967 13 C 0.045 3.955 14 O -0.361 6.361 15 C 0.078 3.922 16 H 0.062 0.938 17 C 0.185 3.815 18 H 0.059 0.941 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.079 3.921 30 N -0.448 5.448 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.100 0.900 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.389 0.611 49 H 0.254 0.746 50 H 0.083 0.917 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.369 23.236 9.919 30.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.206 4.206 4 C -0.009 4.009 5 C -0.169 4.169 6 C -0.101 4.101 7 C -0.137 4.137 8 C -0.047 4.047 9 C 0.354 3.646 10 O -0.413 6.413 11 N -0.319 5.319 12 C -0.089 4.089 13 C -0.033 4.033 14 O -0.279 6.279 15 C 0.019 3.981 16 H 0.080 0.920 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 C -0.043 4.043 30 N -0.160 5.160 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.089 0.911 42 H 0.173 0.827 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.223 0.777 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.266 22.123 9.530 29.638 hybrid contribution 0.773 -0.121 0.691 1.044 sum -16.493 22.003 10.221 29.336 Atomic orbital electron populations 1.21809 0.93289 1.02604 1.02256 1.20110 0.96435 0.95540 0.94674 1.21943 1.01556 0.94642 1.02499 1.21472 0.94333 0.89774 0.95301 1.22199 0.99829 1.01727 0.93155 1.21658 0.95382 0.93911 0.99145 1.22110 0.98211 0.95051 0.98344 1.21183 0.98765 0.94395 0.90308 1.17892 0.77823 0.85500 0.83395 1.90787 1.51265 1.62668 1.36540 1.48015 1.67683 1.10331 1.05833 1.23859 0.98695 1.01685 0.84704 1.22986 0.96652 0.83820 0.99886 1.88076 1.90916 1.17699 1.31225 1.22923 0.94893 0.95381 0.84946 0.92024 1.20195 0.88856 0.88872 0.94651 0.92349 1.22406 0.97297 1.01503 1.00973 1.42356 1.27996 1.15411 1.50294 1.19256 1.05509 0.91487 1.20583 0.91179 1.24738 0.98853 0.97654 0.99786 1.69681 1.26939 1.30539 1.30812 0.86203 0.79299 0.83233 0.77544 1.21784 1.21867 1.20795 1.22575 0.99735 0.80196 1.01838 1.67292 1.11144 1.08682 1.28888 0.92533 0.91575 0.92098 0.88757 0.91498 0.92176 0.92141 0.84069 0.83897 0.83327 0.91081 0.82742 0.88182 0.93450 0.94691 0.92418 0.92938 0.77676 0.93614 0.89923 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.18 37.16 0.34 -0.40 16 2 C -0.05 -0.28 3.23 -91.77 -0.30 -0.58 16 3 C -0.15 -0.62 8.62 37.16 0.32 -0.30 16 4 C 0.13 1.04 5.79 -82.60 -0.48 0.56 16 5 C -0.15 -0.96 9.18 -39.32 -0.36 -1.32 16 6 C -0.08 -0.52 10.17 -39.31 -0.40 -0.92 16 7 C -0.12 -1.14 9.63 -39.05 -0.38 -1.52 16 8 C 0.09 1.09 6.60 -83.01 -0.55 0.55 16 9 C 0.57 8.56 7.68 -12.18 -0.09 8.46 16 10 O -0.54 -9.40 15.86 5.35 0.08 -9.31 16 11 N -0.59 -8.72 3.02 -173.27 -0.52 -9.24 16 12 C 0.03 0.42 6.18 -3.53 -0.02 0.40 16 13 C 0.04 0.63 6.98 37.31 0.26 0.90 16 14 O -0.36 -6.61 9.24 -35.23 -0.33 -6.94 16 15 C 0.08 1.43 2.61 -26.58 -0.07 1.37 16 16 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 17 C 0.18 3.88 2.77 -67.93 -0.19 3.69 16 18 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 19 C -0.16 -3.12 9.06 37.16 0.34 -2.78 16 20 N -0.72 -18.83 5.10 -53.42 -0.27 -19.10 16 21 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 22 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 25 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.08 1.26 5.83 -3.53 -0.02 1.24 16 30 N -0.45 -4.71 6.00 -6.06 -0.04 -4.75 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.06 0.19 6.48 -51.93 -0.34 -0.15 16 37 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 38 H 0.14 0.53 6.31 -52.48 -0.33 0.20 16 39 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.15 1.42 7.70 -52.49 -0.40 1.02 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.16 1.79 3.91 -88.30 -0.35 1.45 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 46 H 0.06 1.17 7.55 -51.93 -0.39 0.78 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.39 11.00 7.59 -40.82 -0.31 10.69 16 49 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.08 1.26 6.27 -51.93 -0.33 0.93 16 51 H 0.10 1.63 7.08 -51.93 -0.37 1.26 16 LS Contribution 403.24 15.07 6.08 6.08 Total: -1.00 -34.20 403.24 -9.32 -43.52 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -8.18 Total: 8.12 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.84 Total: 1.92 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.11 Total: -61.27 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.24 Total: -16.25 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.20 -9.32 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506839798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.501 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds