Wall clock time and date at job start Wed Apr 1 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46900 * 2 1 4 4 C 1.50701 * 109.47056 * 119.99747 * 2 1 3 5 5 C 1.38604 * 119.55005 * 275.00093 * 4 2 1 6 6 C 1.38590 * 119.35372 * 180.02562 * 5 4 2 7 7 C 1.38631 * 118.48753 * 359.97438 * 6 5 4 8 8 C 1.39278 * 119.05719 * 0.02562 * 7 6 5 9 9 C 1.48163 * 119.71651 * 179.97438 * 8 7 6 10 10 O 1.21516 * 120.00384 * 12.66278 * 9 8 7 11 11 N 1.34776 * 119.99849 * 192.66574 * 9 8 7 12 12 C 1.47157 * 120.98298 * 1.21521 * 11 9 8 13 13 C 1.53290 * 108.38404 * 129.44433 * 12 11 9 14 14 O 1.42960 * 109.22623 * 52.30395 * 13 12 11 15 15 C 1.42967 * 114.16421 * 297.42014 * 14 13 12 16 16 H 1.09006 * 109.55180 * 302.62698 * 15 14 13 17 17 C 1.52999 * 109.50980 * 182.50661 * 15 14 13 18 18 H 1.09002 * 109.47062 * 185.25690 * 17 15 14 19 19 C 1.53009 * 109.46794 * 305.24887 * 17 15 14 20 20 N 1.46496 * 109.47649 * 65.25110 * 17 15 14 21 21 C 1.36931 * 120.00373 * 154.99893 * 20 17 15 22 22 H 1.08006 * 119.99989 * 0.02562 * 21 20 17 23 23 C 1.38816 * 120.00184 * 180.27342 * 21 20 17 24 24 N 1.31619 * 119.99966 * 359.73116 * 23 21 20 25 25 Si 1.86796 * 119.99917 * 179.72329 * 23 21 20 26 26 H 1.48500 * 109.47025 * 90.00221 * 25 23 21 27 27 H 1.48499 * 109.47244 * 210.00103 * 25 23 21 28 28 H 1.48506 * 109.47512 * 330.00387 * 25 23 21 29 29 C 1.47151 * 120.98230 * 181.19378 * 11 9 8 30 30 N 1.31495 * 119.55214 * 95.29537 * 4 2 1 31 31 H 1.08997 * 109.47239 * 299.99746 * 1 2 3 32 32 H 1.08997 * 109.47270 * 60.00344 * 1 2 3 33 33 H 1.09001 * 109.46762 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47214 * 239.99706 * 2 1 3 35 35 H 1.09005 * 109.47149 * 299.99798 * 3 2 1 36 36 H 1.08995 * 109.47427 * 59.99837 * 3 2 1 37 37 H 1.09009 * 109.46928 * 179.97438 * 3 2 1 38 38 H 1.08007 * 120.32179 * 0.04631 * 5 4 2 39 39 H 1.08000 * 120.75644 * 179.97438 * 6 5 4 40 40 H 1.07993 * 120.46862 * 180.02562 * 7 6 5 41 41 H 1.08995 * 109.68210 * 249.16851 * 12 11 9 42 42 H 1.08996 * 109.67945 * 9.71956 * 12 11 9 43 43 H 1.09003 * 109.50951 * 172.22834 * 13 12 11 44 44 H 1.09006 * 109.51028 * 292.37724 * 13 12 11 45 45 H 1.08994 * 109.47125 * 299.99944 * 19 17 15 46 46 H 1.08993 * 109.46863 * 60.00635 * 19 17 15 47 47 H 1.08998 * 109.46609 * 180.02562 * 19 17 15 48 48 H 0.97008 * 119.99803 * 335.00041 * 20 17 15 49 49 H 0.96994 * 120.00132 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.68469 * 110.83643 * 29 11 9 51 51 H 1.09000 * 109.71608 * 350.29573 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1611 -0.0098 2.4195 6 6 2.6240 -0.6670 3.5485 7 6 2.9433 -2.0121 3.4463 8 6 2.7892 -2.6526 2.2192 9 6 3.1266 -4.0898 2.0933 10 8 3.3127 -4.7598 3.0899 11 7 3.2273 -4.6540 0.8735 12 6 3.0326 -3.8571 -0.3482 13 6 4.2202 -4.1089 -1.2841 14 8 4.3869 -5.5173 -1.4647 15 6 4.6988 -6.2284 -0.2643 16 1 5.6056 -5.8165 0.1786 17 6 4.9148 -7.7080 -0.5883 18 1 5.0601 -8.2652 0.3372 19 6 3.6893 -8.2530 -1.3246 20 7 6.0996 -7.8540 -1.4374 21 6 6.7938 -9.0343 -1.4472 22 1 6.4675 -9.8578 -0.8292 23 6 7.9198 -9.1708 -2.2475 24 7 8.3171 -8.1674 -3.0010 25 14 8.8711 -10.7783 -2.2549 26 1 8.3217 -11.6738 -3.3045 27 1 10.3031 -10.5048 -2.5375 28 1 8.7448 -11.4345 -0.9287 29 6 3.5356 -6.0851 0.7239 30 7 2.3481 -1.9849 1.1601 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.1301 1.4425 0.0005 38 1 1.9029 1.0379 2.4658 39 1 2.7334 -0.1431 4.4866 40 1 3.3063 -2.5556 4.3060 41 1 2.1076 -4.1586 -0.8396 42 1 2.9848 -2.7987 -0.0923 43 1 4.0298 -3.6382 -2.2486 44 1 5.1251 -3.6885 -0.8452 45 1 2.8078 -8.1444 -0.6928 46 1 3.5440 -7.6959 -2.2501 47 1 3.8431 -9.3072 -1.5551 48 1 6.3925 -7.1145 -1.9928 49 1 9.1041 -8.2626 -3.5600 50 1 2.6613 -6.6109 0.3404 51 1 3.8208 -6.5027 1.6895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506839798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:56 Heat of formation + Delta-G solvation = -36.030469 kcal Electronic energy + Delta-G solvation = -31320.543221 eV Core-core repulsion = 27220.134042 eV Total energy + Delta-G solvation = -4100.409178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17046 -40.88539 -39.56229 -37.16281 -36.47896 -35.89109 -34.39171 -33.69758 -31.93200 -31.32276 -29.97789 -28.71581 -27.97903 -26.58856 -25.55026 -25.05211 -24.74360 -23.50144 -21.98028 -21.17173 -20.35987 -19.32102 -18.65469 -18.07197 -17.54168 -17.13810 -17.04731 -16.73012 -16.62671 -16.09395 -15.90449 -15.77137 -15.40981 -15.24559 -15.11456 -14.83925 -14.59958 -14.43433 -14.28665 -14.00393 -13.62810 -13.58524 -13.34839 -13.24004 -13.00745 -12.83565 -12.74104 -12.47481 -12.41545 -12.25496 -12.18588 -12.03258 -11.90378 -11.76075 -11.66194 -11.64446 -11.41074 -11.18944 -10.95248 -10.94483 -10.11973 -9.96756 -9.61400 -9.02015 -7.92513 -5.21708 -0.44146 0.14946 1.46538 1.48947 1.54268 1.57204 1.68842 2.56205 2.67551 2.71971 2.86698 3.37115 3.41160 3.56509 3.74450 3.90269 3.95004 3.96425 4.00082 4.04356 4.14927 4.18495 4.23817 4.31771 4.32470 4.36395 4.41444 4.53448 4.58492 4.68719 4.75739 4.79630 4.86765 4.93122 4.96904 5.00343 5.02579 5.05900 5.07616 5.11913 5.23091 5.27618 5.32352 5.42623 5.46865 5.50805 5.59442 5.70186 6.15062 6.23089 6.28933 6.59349 6.91294 7.34668 8.09505 8.35197 9.31190 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002349 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.356404 B =11916.841131 C =12459.173810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C -0.146 4.146 4 C 0.123 3.877 5 C -0.134 4.134 6 C -0.067 4.067 7 C -0.124 4.124 8 C 0.061 3.939 9 C 0.562 3.438 10 O -0.571 6.571 11 N -0.593 5.593 12 C 0.041 3.959 13 C 0.040 3.960 14 O -0.383 6.383 15 C 0.092 3.908 16 H 0.037 0.963 17 C 0.177 3.823 18 H 0.060 0.940 19 C -0.148 4.148 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.078 0.922 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.269 1.269 29 C 0.088 3.912 30 N -0.463 5.463 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.173 0.827 43 H 0.125 0.875 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.039 0.961 48 H 0.375 0.625 49 H 0.250 0.750 50 H 0.094 0.906 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.123 25.515 10.814 33.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.154 4.154 6 C -0.092 4.092 7 C -0.146 4.146 8 C -0.075 4.075 9 C 0.351 3.649 10 O -0.451 6.451 11 N -0.323 5.323 12 C -0.080 4.080 13 C -0.037 4.037 14 O -0.301 6.301 15 C 0.032 3.968 16 H 0.055 0.945 17 C 0.068 3.932 18 H 0.078 0.922 19 C -0.207 4.207 20 N -0.373 5.373 21 C -0.371 4.371 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.194 1.194 29 C -0.035 4.035 30 N -0.176 5.176 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.195 0.805 39 H 0.197 0.803 40 H 0.161 0.839 41 H 0.096 0.904 42 H 0.188 0.812 43 H 0.143 0.857 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.207 0.793 49 H 0.059 0.941 50 H 0.112 0.888 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.067 24.402 10.449 32.683 hybrid contribution 1.218 -0.656 0.449 1.455 sum -17.848 23.746 10.898 31.642 Atomic orbital electron populations 1.21793 0.92690 1.01809 1.03376 1.20184 0.96810 0.96360 0.93349 1.21938 1.01183 0.93376 1.03830 1.21954 0.93824 0.88964 0.96952 1.22629 0.97540 1.03172 0.92014 1.22058 0.93810 0.92481 1.00839 1.22219 0.98479 0.96556 0.97304 1.20802 1.01788 0.92992 0.91896 1.18444 0.76856 0.86897 0.82733 1.90746 1.52904 1.63921 1.37498 1.48118 1.67661 1.09887 1.06674 1.23969 0.98007 1.02488 0.83544 1.23243 0.97038 0.81765 1.01667 1.88030 1.91001 1.19833 1.31278 1.22549 0.95029 0.93679 0.85505 0.94478 1.20416 0.87835 0.90942 0.93959 0.92217 1.22205 0.97621 1.00147 1.00752 1.42530 1.29516 1.14346 1.50877 1.19661 1.05408 0.92267 1.19772 0.90451 1.25589 1.00246 1.01112 1.00093 1.69849 1.27488 1.32698 1.32065 0.85123 0.77323 0.79233 0.77983 1.21386 1.22261 1.19384 1.22337 0.98926 0.81627 1.00577 1.67013 1.11856 1.10053 1.28631 0.91548 0.90352 0.93838 0.89603 0.90583 0.90516 0.92706 0.80503 0.80333 0.83891 0.90405 0.81156 0.85720 0.94323 0.91269 0.93598 0.94149 0.79347 0.94119 0.88821 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.18 71.98 0.66 -0.44 16 2 C -0.05 -0.44 3.23 -11.54 -0.04 -0.48 16 3 C -0.15 -0.72 8.62 71.98 0.62 -0.10 16 4 C 0.12 1.68 5.79 42.70 0.25 1.93 16 5 C -0.13 -1.23 9.18 22.44 0.21 -1.02 16 6 C -0.07 -0.70 10.17 22.45 0.23 -0.48 16 7 C -0.12 -2.33 9.63 22.61 0.22 -2.12 16 8 C 0.06 1.46 6.60 41.90 0.28 1.73 16 9 C 0.56 17.42 7.68 86.88 0.67 18.08 16 10 O -0.57 -20.86 15.86 -3.77 -0.06 -20.92 16 11 N -0.59 -17.89 3.02 -820.41 -2.48 -20.36 16 12 C 0.04 1.05 6.18 86.35 0.53 1.59 16 13 C 0.04 1.15 6.98 72.08 0.50 1.65 16 14 O -0.38 -14.31 9.24 -148.98 -1.38 -15.68 16 15 C 0.09 3.49 2.61 30.69 0.08 3.57 16 16 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 17 C 0.18 7.59 2.77 45.00 0.12 7.71 16 18 H 0.06 2.53 8.08 -2.39 -0.02 2.51 16 19 C -0.15 -5.66 9.06 71.99 0.65 -5.01 16 20 N -0.73 -39.49 5.10 -322.93 -1.65 -41.14 16 21 C -0.24 -13.86 9.93 84.04 0.83 -13.02 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 25 Si 0.97 47.75 29.55 68.60 2.03 49.78 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 28 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 29 C 0.09 2.87 5.83 86.35 0.50 3.38 16 30 N -0.46 -9.29 6.00 -173.08 -1.04 -10.33 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 36 H 0.08 0.13 6.48 -2.39 -0.02 0.11 16 37 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.18 0.36 6.31 -2.91 -0.02 0.34 16 39 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.14 2.75 7.70 -2.91 -0.02 2.73 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 42 H 0.17 3.87 3.91 -74.20 -0.29 3.58 16 43 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 44 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.07 2.16 6.42 -2.39 -0.02 2.14 16 46 H 0.04 1.86 7.55 -2.39 -0.02 1.84 16 47 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.37 22.05 7.59 -92.70 -0.70 21.34 16 49 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 50 H 0.09 2.80 6.27 -2.39 -0.01 2.79 16 51 H 0.09 3.11 7.08 -2.39 -0.02 3.10 16 Total: -1.00 -76.77 403.24 2.45 -74.33 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.04 Total: 33.07 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.78 Total: 12.76 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -4.88 Total: -133.33 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.44 Total: -36.60 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -76.77 2.45 -74.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506839798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.295 kcal (2) G-P(sol) polarization free energy of solvation -76.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds