Wall clock time and date at job start Wed Apr 1 2020 04:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46739 * 2 1 4 4 C 1.50693 * 109.47600 * 120.00210 * 2 1 3 5 5 C 1.38603 * 119.55081 * 275.00273 * 4 2 1 6 6 C 1.38579 * 119.34965 * 179.97438 * 5 4 2 7 7 C 1.38629 * 118.49057 * 359.97438 * 6 5 4 8 8 C 1.39270 * 119.06393 * 0.02562 * 7 6 5 9 9 C 1.48160 * 119.72410 * 179.97438 * 8 7 6 10 10 O 1.21517 * 120.00492 * 351.44159 * 9 8 7 11 11 N 1.34777 * 120.00167 * 171.44561 * 9 8 7 12 12 C 1.47162 * 120.97893 * 352.71320 * 11 9 8 13 13 C 1.53297 * 108.38067 * 230.55784 * 12 11 9 14 14 O 1.42965 * 109.22361 * 307.69512 * 13 12 11 15 15 C 1.42957 * 114.16315 * 62.58462 * 14 13 12 16 16 H 1.09005 * 109.51464 * 57.39341 * 15 14 13 17 17 C 1.53005 * 109.50774 * 177.49260 * 15 14 13 18 18 H 1.09001 * 109.46724 * 175.00118 * 17 15 14 19 19 C 1.52996 * 109.47228 * 55.00446 * 17 15 14 20 20 N 1.46499 * 109.47235 * 294.99934 * 17 15 14 21 21 C 1.36933 * 119.99623 * 205.00146 * 20 17 15 22 22 H 1.07998 * 120.00873 * 0.02562 * 21 20 17 23 23 C 1.38823 * 119.99877 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99975 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99543 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46949 * 90.00305 * 25 23 21 27 27 H 1.48501 * 109.46807 * 209.99951 * 25 23 21 28 28 H 1.48494 * 109.47022 * 329.99848 * 25 23 21 29 29 C 1.47154 * 120.98807 * 172.73440 * 11 9 8 30 30 N 1.31502 * 119.54541 * 95.25153 * 4 2 1 31 31 H 1.09000 * 109.47091 * 299.99425 * 1 2 3 32 32 H 1.08993 * 109.47629 * 59.99650 * 1 2 3 33 33 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46567 * 240.00570 * 2 1 3 35 35 H 1.09001 * 109.47126 * 60.00912 * 3 2 1 36 36 H 1.09007 * 109.47161 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47420 * 300.00197 * 3 2 1 38 38 H 1.07993 * 120.32155 * 359.97438 * 5 4 2 39 39 H 1.08001 * 120.75291 * 179.97438 * 6 5 4 40 40 H 1.08000 * 120.46875 * 179.97438 * 7 6 5 41 41 H 1.08999 * 109.67972 * 110.83571 * 12 11 9 42 42 H 1.09000 * 109.67924 * 350.28237 * 12 11 9 43 43 H 1.09007 * 109.50939 * 187.77589 * 13 12 11 44 44 H 1.08999 * 109.51473 * 67.62223 * 13 12 11 45 45 H 1.08995 * 109.47234 * 180.02562 * 19 17 15 46 46 H 1.08995 * 109.47410 * 59.99603 * 19 17 15 47 47 H 1.09001 * 109.47001 * 299.99503 * 19 17 15 48 48 H 0.96996 * 120.00199 * 24.99819 * 20 17 15 49 49 H 0.97001 * 119.99562 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.67507 * 9.72414 * 29 11 9 51 51 H 1.08989 * 109.68372 * 249.16635 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.1612 -0.0100 2.4194 6 6 2.6232 -0.6675 3.5484 7 6 2.9416 -2.0129 3.4463 8 6 2.7875 -2.6533 2.2192 9 6 3.1240 -4.0907 2.0934 10 8 3.6766 -4.6679 3.0090 11 7 2.8173 -4.7583 0.9635 12 6 2.0098 -4.1281 -0.0931 13 6 0.8672 -5.0813 -0.4618 14 8 1.4077 -6.3709 -0.7597 15 6 2.0751 -6.9941 0.3402 16 1 1.3871 -7.0820 1.1811 17 6 2.5547 -8.3863 -0.0754 18 1 3.1397 -8.8253 0.7327 19 6 3.4228 -8.2732 -1.3302 20 7 1.3964 -9.2376 -0.3580 21 6 1.5034 -10.5982 -0.2472 22 1 2.4416 -11.0438 0.0489 23 6 0.4060 -11.4049 -0.5155 24 7 0.5090 -12.7128 -0.4094 25 14 -1.2169 -10.6342 -1.0270 26 1 -1.2608 -10.5085 -2.5060 27 1 -2.3387 -11.4931 -0.5697 28 1 -1.3414 -9.2884 -0.4119 29 6 3.2796 -6.1389 0.7499 30 7 2.3474 -1.9852 1.1599 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4426 -0.0005 37 1 1.6765 1.9564 -0.8900 38 1 1.9041 1.0379 2.4656 39 1 2.7326 -0.1437 4.4866 40 1 3.3047 -2.5565 4.3060 41 1 2.6313 -3.9437 -0.9694 42 1 1.5992 -3.1863 0.2711 43 1 0.3399 -4.6970 -1.3349 44 1 0.1751 -5.1615 0.3765 45 1 3.7640 -9.2650 -1.6265 46 1 4.2845 -7.6399 -1.1199 47 1 2.8378 -7.8342 -2.1384 48 1 0.5536 -8.8374 -0.6236 49 1 -0.2579 -13.2764 -0.5966 50 1 3.7097 -6.5287 1.6725 51 1 4.0288 -6.1569 -0.0414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506839802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:04 Heat of formation + Delta-G solvation = -11.477918 kcal Electronic energy + Delta-G solvation = -31438.870180 eV Core-core repulsion = 27339.525680 eV Total energy + Delta-G solvation = -4099.344500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35429 -39.91020 -38.40371 -36.00449 -35.66714 -34.68957 -33.13434 -32.36959 -30.89785 -30.40747 -28.76891 -27.80975 -27.39945 -25.20966 -24.41340 -24.33128 -23.22451 -22.23892 -21.12008 -19.79406 -19.50027 -17.91084 -17.51573 -17.34237 -16.53380 -16.24595 -15.88133 -15.71947 -15.26910 -15.11158 -14.84223 -14.57734 -14.39719 -14.23242 -14.21935 -13.82416 -13.39441 -13.30935 -13.06282 -12.86201 -12.73905 -12.61540 -12.47339 -12.31901 -12.17736 -11.69800 -11.68372 -11.52214 -11.38115 -11.19372 -10.88004 -10.72097 -10.61557 -10.46742 -10.35628 -10.30604 -9.98361 -9.87888 -9.53473 -9.45912 -9.24456 -8.87398 -8.47274 -7.20474 -5.71097 -3.05676 0.25216 0.72150 2.45498 2.70487 3.39880 3.44256 3.49561 3.50518 3.51001 3.98177 4.05837 4.24071 4.48652 4.54171 4.57065 4.66107 4.67384 4.74909 4.79755 4.90436 5.07333 5.12851 5.18045 5.19425 5.28004 5.29525 5.31406 5.37655 5.46547 5.55386 5.57719 5.63634 5.66859 5.68586 5.73919 5.76027 5.79528 5.81286 5.90081 5.99635 6.15634 6.20428 6.41137 6.45509 6.54330 6.79976 7.11980 7.17512 7.32790 7.43482 7.93742 8.05713 8.48363 9.27895 10.00404 10.21824 11.47235 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.002576 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.603604 B =10867.376696 C =11629.691342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C -0.148 4.148 4 C 0.130 3.870 5 C -0.149 4.149 6 C -0.076 4.076 7 C -0.116 4.116 8 C 0.088 3.912 9 C 0.569 3.431 10 O -0.533 6.533 11 N -0.590 5.590 12 C 0.046 3.954 13 C 0.043 3.957 14 O -0.365 6.365 15 C 0.074 3.926 16 H 0.063 0.937 17 C 0.190 3.810 18 H 0.068 0.932 19 C -0.162 4.162 20 N -0.744 5.744 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.277 1.277 29 C 0.080 3.920 30 N -0.449 5.449 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.073 0.927 42 H 0.148 0.852 43 H 0.101 0.899 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.038 0.962 47 H 0.056 0.944 48 H 0.366 0.634 49 H 0.259 0.741 50 H 0.101 0.899 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 34.265 3.600 34.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.206 4.206 4 C -0.009 4.009 5 C -0.168 4.168 6 C -0.102 4.102 7 C -0.137 4.137 8 C -0.049 4.049 9 C 0.355 3.645 10 O -0.409 6.409 11 N -0.322 5.322 12 C -0.077 4.077 13 C -0.035 4.035 14 O -0.284 6.284 15 C 0.014 3.986 16 H 0.081 0.919 17 C 0.080 3.920 18 H 0.086 0.914 19 C -0.222 4.222 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.203 1.203 29 C -0.042 4.042 30 N -0.161 5.161 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.091 0.909 42 H 0.164 0.836 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.199 0.801 49 H 0.069 0.931 50 H 0.120 0.880 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.165 33.124 3.181 33.427 hybrid contribution -1.119 0.963 0.581 1.586 sum 2.046 34.087 3.762 34.355 Atomic orbital electron populations 1.21827 0.93256 1.02665 1.02376 1.20104 0.96411 0.95528 0.94701 1.21931 1.01448 0.94664 1.02515 1.21449 0.94759 0.89535 0.95185 1.22206 0.99746 1.01757 0.93140 1.21658 0.95434 0.93913 0.99177 1.22124 0.97953 0.95108 0.98470 1.21166 0.98820 0.94472 0.90432 1.17901 0.79356 0.85021 0.82215 1.90795 1.43522 1.68133 1.38452 1.47988 1.51759 1.14625 1.17840 1.23590 0.93502 0.99507 0.91054 1.23029 0.94826 0.84365 1.01312 1.88046 1.73538 1.30726 1.36059 1.22976 0.92525 0.93468 0.89598 0.91898 1.20172 0.89662 0.85986 0.96150 0.91422 1.22374 0.98576 1.01118 1.00161 1.42700 1.09001 1.03607 1.83381 1.19086 0.98565 0.80484 1.38931 0.89148 1.24650 0.97649 0.95128 1.01745 1.69705 1.30422 1.02396 1.55774 0.86531 0.84901 0.78387 0.78666 1.21071 1.21930 1.20297 1.22548 0.97745 0.80416 1.03501 1.67452 1.10563 1.08270 1.29847 0.92454 0.91525 0.92065 0.88790 0.92139 0.92253 0.91523 0.84081 0.83892 0.83296 0.90908 0.83621 0.88100 0.93430 0.92411 0.94333 0.92524 0.80077 0.93140 0.88026 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.18 37.16 0.34 -0.36 16 2 C -0.05 -0.26 3.23 -91.78 -0.30 -0.56 16 3 C -0.15 -0.56 8.62 37.16 0.32 -0.24 16 4 C 0.13 0.99 5.79 -82.60 -0.48 0.51 16 5 C -0.15 -0.90 9.18 -39.32 -0.36 -1.26 16 6 C -0.08 -0.49 10.17 -39.31 -0.40 -0.89 16 7 C -0.12 -1.09 9.63 -39.05 -0.38 -1.46 16 8 C 0.09 1.02 6.59 -83.01 -0.55 0.47 16 9 C 0.57 8.21 7.67 -12.19 -0.09 8.12 16 10 O -0.53 -9.06 15.83 5.35 0.08 -8.97 16 11 N -0.59 -8.28 3.02 -173.27 -0.52 -8.81 16 12 C 0.05 0.55 6.03 -3.53 -0.02 0.53 16 13 C 0.04 0.56 6.98 37.31 0.26 0.82 16 14 O -0.37 -6.20 9.24 -35.23 -0.33 -6.53 16 15 C 0.07 1.27 2.61 -26.58 -0.07 1.21 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.19 3.81 2.77 -67.93 -0.19 3.62 16 18 H 0.07 1.36 8.08 -51.93 -0.42 0.95 16 19 C -0.16 -2.99 9.06 37.16 0.34 -2.65 16 20 N -0.74 -18.33 4.91 -53.42 -0.26 -18.59 16 21 C -0.24 -6.94 10.41 -15.06 -0.16 -7.10 16 22 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 24 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 25 Si 0.88 22.95 27.74 -169.99 -4.71 18.24 16 26 H -0.28 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 H -0.28 -6.87 6.52 56.52 0.37 -6.50 16 29 C 0.08 1.21 5.84 -3.53 -0.02 1.19 16 30 N -0.45 -4.49 6.05 -6.06 -0.04 -4.53 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.17 6.48 -51.93 -0.34 -0.17 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.14 0.48 6.30 -52.49 -0.33 0.15 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.15 1.37 7.67 -52.49 -0.40 0.97 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.15 1.57 4.21 -77.53 -0.33 1.25 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.04 0.59 6.41 -51.93 -0.33 0.26 16 47 H 0.06 1.07 7.56 -51.93 -0.39 0.68 16 48 H 0.37 9.11 5.44 -40.82 -0.22 8.89 16 49 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 50 H 0.10 1.59 7.06 -51.93 -0.37 1.22 16 51 H 0.08 1.21 6.26 -51.94 -0.33 0.88 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -34.91 400.21 -8.94 -43.85 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.12 Total: 6.49 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.85 Total: 1.96 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.05 Total: -61.07 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.24 Total: -15.50 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.71 Total: 18.24 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.91 -8.94 -43.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506839802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.371 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds