Wall clock time and date at job start Wed Apr 1 2020 04:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46739 * 2 1 4 4 C 1.50693 * 109.47600 * 120.00210 * 2 1 3 5 5 C 1.38603 * 119.55081 * 275.00273 * 4 2 1 6 6 C 1.38579 * 119.34965 * 179.97438 * 5 4 2 7 7 C 1.38629 * 118.49057 * 359.97438 * 6 5 4 8 8 C 1.39270 * 119.06393 * 0.02562 * 7 6 5 9 9 C 1.48160 * 119.72410 * 179.97438 * 8 7 6 10 10 O 1.21517 * 120.00492 * 351.44159 * 9 8 7 11 11 N 1.34777 * 120.00167 * 171.44561 * 9 8 7 12 12 C 1.47162 * 120.97893 * 352.71320 * 11 9 8 13 13 C 1.53297 * 108.38067 * 230.55784 * 12 11 9 14 14 O 1.42965 * 109.22361 * 307.69512 * 13 12 11 15 15 C 1.42957 * 114.16315 * 62.58462 * 14 13 12 16 16 H 1.09005 * 109.51464 * 57.39341 * 15 14 13 17 17 C 1.53005 * 109.50774 * 177.49260 * 15 14 13 18 18 H 1.09001 * 109.46724 * 175.00118 * 17 15 14 19 19 C 1.52996 * 109.47228 * 55.00446 * 17 15 14 20 20 N 1.46499 * 109.47235 * 294.99934 * 17 15 14 21 21 C 1.36933 * 119.99623 * 205.00146 * 20 17 15 22 22 H 1.07998 * 120.00873 * 0.02562 * 21 20 17 23 23 C 1.38823 * 119.99877 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99975 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99543 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46949 * 90.00305 * 25 23 21 27 27 H 1.48501 * 109.46807 * 209.99951 * 25 23 21 28 28 H 1.48494 * 109.47022 * 329.99848 * 25 23 21 29 29 C 1.47154 * 120.98807 * 172.73440 * 11 9 8 30 30 N 1.31502 * 119.54541 * 95.25153 * 4 2 1 31 31 H 1.09000 * 109.47091 * 299.99425 * 1 2 3 32 32 H 1.08993 * 109.47629 * 59.99650 * 1 2 3 33 33 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46567 * 240.00570 * 2 1 3 35 35 H 1.09001 * 109.47126 * 60.00912 * 3 2 1 36 36 H 1.09007 * 109.47161 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47420 * 300.00197 * 3 2 1 38 38 H 1.07993 * 120.32155 * 359.97438 * 5 4 2 39 39 H 1.08001 * 120.75291 * 179.97438 * 6 5 4 40 40 H 1.08000 * 120.46875 * 179.97438 * 7 6 5 41 41 H 1.08999 * 109.67972 * 110.83571 * 12 11 9 42 42 H 1.09000 * 109.67924 * 350.28237 * 12 11 9 43 43 H 1.09007 * 109.50939 * 187.77589 * 13 12 11 44 44 H 1.08999 * 109.51473 * 67.62223 * 13 12 11 45 45 H 1.08995 * 109.47234 * 180.02562 * 19 17 15 46 46 H 1.08995 * 109.47410 * 59.99603 * 19 17 15 47 47 H 1.09001 * 109.47001 * 299.99503 * 19 17 15 48 48 H 0.96996 * 120.00199 * 24.99819 * 20 17 15 49 49 H 0.97001 * 119.99562 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.67507 * 9.72414 * 29 11 9 51 51 H 1.08989 * 109.68372 * 249.16635 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.1612 -0.0100 2.4194 6 6 2.6232 -0.6675 3.5484 7 6 2.9416 -2.0129 3.4463 8 6 2.7875 -2.6533 2.2192 9 6 3.1240 -4.0907 2.0934 10 8 3.6766 -4.6679 3.0090 11 7 2.8173 -4.7583 0.9635 12 6 2.0098 -4.1281 -0.0931 13 6 0.8672 -5.0813 -0.4618 14 8 1.4077 -6.3709 -0.7597 15 6 2.0751 -6.9941 0.3402 16 1 1.3871 -7.0820 1.1811 17 6 2.5547 -8.3863 -0.0754 18 1 3.1397 -8.8253 0.7327 19 6 3.4228 -8.2732 -1.3302 20 7 1.3964 -9.2376 -0.3580 21 6 1.5034 -10.5982 -0.2472 22 1 2.4416 -11.0438 0.0489 23 6 0.4060 -11.4049 -0.5155 24 7 0.5090 -12.7128 -0.4094 25 14 -1.2169 -10.6342 -1.0270 26 1 -1.2608 -10.5085 -2.5060 27 1 -2.3387 -11.4931 -0.5697 28 1 -1.3414 -9.2884 -0.4119 29 6 3.2796 -6.1389 0.7499 30 7 2.3474 -1.9852 1.1599 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4426 -0.0005 37 1 1.6765 1.9564 -0.8900 38 1 1.9041 1.0379 2.4656 39 1 2.7326 -0.1437 4.4866 40 1 3.3047 -2.5565 4.3060 41 1 2.6313 -3.9437 -0.9694 42 1 1.5992 -3.1863 0.2711 43 1 0.3399 -4.6970 -1.3349 44 1 0.1751 -5.1615 0.3765 45 1 3.7640 -9.2650 -1.6265 46 1 4.2845 -7.6399 -1.1199 47 1 2.8378 -7.8342 -2.1384 48 1 0.5536 -8.8374 -0.6236 49 1 -0.2579 -13.2764 -0.5966 50 1 3.7097 -6.5287 1.6725 51 1 4.0288 -6.1569 -0.0414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506839802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:03 Heat of formation + Delta-G solvation = -34.431255 kcal Electronic energy + Delta-G solvation = -31439.865512 eV Core-core repulsion = 27339.525680 eV Total energy + Delta-G solvation = -4100.339831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.16238 -40.91271 -39.59802 -37.30873 -36.47981 -35.92071 -34.42289 -33.70741 -32.30353 -31.37136 -30.23612 -28.76846 -27.97831 -26.57210 -25.44131 -25.02007 -24.65736 -23.44657 -21.94929 -21.33418 -20.37133 -19.79369 -18.66611 -18.09601 -17.57463 -17.10393 -17.00657 -16.78430 -16.58832 -16.29577 -15.91130 -15.79599 -15.44889 -15.25325 -14.92981 -14.84346 -14.64420 -14.51903 -14.32391 -14.21411 -13.79816 -13.67062 -13.38201 -13.30437 -13.08641 -12.92638 -12.76827 -12.54844 -12.35829 -12.28647 -12.15672 -12.03363 -11.88816 -11.80712 -11.71710 -11.65262 -11.42392 -11.21895 -10.99474 -10.95374 -10.13339 -10.03849 -9.62554 -9.33556 -8.02688 -5.35400 -0.45058 0.15154 1.36563 1.39351 1.46817 1.54338 1.67091 2.47869 2.67450 2.69163 2.84162 3.28630 3.35084 3.42321 3.73299 3.86083 3.91659 3.93422 3.95180 4.02777 4.09704 4.18208 4.22898 4.25345 4.31220 4.35110 4.39988 4.52999 4.56917 4.64204 4.75020 4.77106 4.86512 4.89496 4.96163 4.99857 5.01906 5.02765 5.04717 5.11686 5.20714 5.27685 5.30182 5.44072 5.45423 5.56280 5.66527 5.76057 6.13188 6.16533 6.23034 6.59613 6.91212 7.06933 7.83008 8.03750 9.18776 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.002576 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.603604 B =10867.376696 C =11629.691342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C -0.145 4.145 4 C 0.123 3.877 5 C -0.134 4.134 6 C -0.068 4.068 7 C -0.125 4.125 8 C 0.060 3.940 9 C 0.563 3.437 10 O -0.570 6.570 11 N -0.594 5.594 12 C 0.053 3.947 13 C 0.038 3.962 14 O -0.382 6.382 15 C 0.089 3.911 16 H 0.045 0.955 17 C 0.181 3.819 18 H 0.061 0.939 19 C -0.150 4.150 20 N -0.748 5.748 21 C -0.227 4.227 22 H 0.060 0.940 23 C -0.064 4.064 24 N -0.983 5.983 25 Si 0.954 3.046 26 H -0.278 1.278 27 H -0.294 1.294 28 H -0.259 1.259 29 C 0.088 3.912 30 N -0.462 5.462 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.142 0.858 41 H 0.080 0.920 42 H 0.162 0.838 43 H 0.129 0.871 44 H 0.042 0.958 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.367 0.633 49 H 0.258 0.742 50 H 0.091 0.909 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 39.103 3.189 39.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.154 4.154 6 C -0.094 4.094 7 C -0.146 4.146 8 C -0.076 4.076 9 C 0.351 3.649 10 O -0.450 6.450 11 N -0.325 5.325 12 C -0.069 4.069 13 C -0.039 4.039 14 O -0.301 6.301 15 C 0.029 3.971 16 H 0.063 0.937 17 C 0.073 3.927 18 H 0.079 0.921 19 C -0.209 4.209 20 N -0.391 5.391 21 C -0.358 4.358 22 H 0.078 0.922 23 C -0.255 4.255 24 N -0.633 5.633 25 Si 0.782 3.218 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.184 1.184 29 C -0.035 4.035 30 N -0.175 5.175 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.194 0.806 39 H 0.195 0.805 40 H 0.160 0.840 41 H 0.098 0.902 42 H 0.178 0.822 43 H 0.147 0.853 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.200 0.800 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.200 38.025 2.760 38.189 hybrid contribution -0.742 -0.391 0.740 1.118 sum 1.458 37.634 3.500 37.824 Atomic orbital electron populations 1.21821 0.92696 1.02053 1.03363 1.20162 0.96740 0.96299 0.93354 1.21929 1.01123 0.93445 1.03780 1.21932 0.94183 0.88843 0.96769 1.22626 0.97537 1.03168 0.92052 1.22042 0.93950 0.92528 1.00840 1.22225 0.98279 0.96572 0.97521 1.20794 1.01799 0.93056 0.91920 1.18443 0.78501 0.86392 0.81519 1.90757 1.45255 1.69340 1.39622 1.48091 1.51975 1.14042 1.18427 1.23707 0.92938 0.99556 0.90686 1.23306 0.95190 0.82902 1.02499 1.88001 1.73768 1.32587 1.35769 1.22568 0.93058 0.92402 0.89056 0.93699 1.20379 0.88572 0.86980 0.96761 0.92127 1.22193 0.99285 1.00577 0.98845 1.42702 1.10469 1.02422 1.83512 1.19054 0.97264 0.82430 1.37055 0.92154 1.25444 1.01606 0.95582 1.02856 1.69875 1.31513 1.04045 1.57915 0.85414 0.79912 0.78067 0.78410 1.20431 1.22098 1.18442 1.22330 0.96796 0.81137 1.03246 1.67234 1.11208 1.09613 1.29433 0.91662 0.90380 0.93476 0.89608 0.90608 0.92749 0.90614 0.80634 0.80486 0.83980 0.90196 0.82208 0.85276 0.93957 0.94486 0.91020 0.92714 0.80020 0.93359 0.89102 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.18 71.98 0.66 -0.30 16 2 C -0.05 -0.37 3.23 -11.54 -0.04 -0.41 16 3 C -0.15 -0.56 8.62 71.98 0.62 0.06 16 4 C 0.12 1.53 5.79 42.69 0.25 1.77 16 5 C -0.13 -1.11 9.18 22.44 0.21 -0.90 16 6 C -0.07 -0.67 10.17 22.44 0.23 -0.44 16 7 C -0.12 -2.22 9.63 22.61 0.22 -2.00 16 8 C 0.06 1.35 6.59 41.89 0.28 1.63 16 9 C 0.56 16.50 7.67 86.88 0.67 17.17 16 10 O -0.57 -20.16 15.83 -3.77 -0.06 -20.22 16 11 N -0.59 -16.55 3.02 -820.38 -2.48 -19.03 16 12 C 0.05 1.18 6.03 86.35 0.52 1.70 16 13 C 0.04 0.93 6.98 72.08 0.50 1.44 16 14 O -0.38 -12.53 9.24 -148.98 -1.38 -13.90 16 15 C 0.09 3.07 2.61 30.69 0.08 3.15 16 16 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 17 C 0.18 7.34 2.77 44.99 0.12 7.47 16 18 H 0.06 2.53 8.08 -2.39 -0.02 2.51 16 19 C -0.15 -5.44 9.06 71.98 0.65 -4.79 16 20 N -0.75 -37.16 4.91 -322.94 -1.58 -38.74 16 21 C -0.23 -13.44 10.41 84.04 0.87 -12.56 16 22 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 23 C -0.06 -3.88 5.50 84.87 0.47 -3.42 16 24 N -0.98 -64.71 13.97 21.65 0.30 -64.41 16 25 Si 0.95 47.91 27.74 68.60 1.90 49.82 16 26 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 27 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.26 -12.12 6.52 99.48 0.65 -11.47 16 29 C 0.09 2.66 5.84 86.35 0.50 3.16 16 30 N -0.46 -8.55 6.05 -173.09 -1.05 -9.60 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.06 6.48 -2.39 -0.02 0.05 16 36 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.18 0.23 6.30 -2.91 -0.02 0.21 16 39 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.14 2.63 7.67 -2.91 -0.02 2.60 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.16 3.22 4.21 -52.93 -0.22 3.00 16 43 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 44 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 46 H 0.07 2.11 6.41 -2.39 -0.02 2.10 16 47 H 0.05 2.01 7.56 -2.39 -0.02 1.99 16 48 H 0.37 18.02 5.44 -92.71 -0.50 17.52 16 49 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 50 H 0.09 2.94 7.06 -2.39 -0.02 2.92 16 51 H 0.10 2.64 6.26 -2.39 -0.01 2.63 16 Total: -1.00 -78.59 400.21 2.63 -75.95 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.16 Total: 27.39 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.81 Total: 12.74 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -4.81 Total: -131.77 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.44 Total: -34.13 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.90 Total: 49.82 kcal Total: -78.59 2.63 -75.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506839802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.523 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds