Wall clock time and date at job start Wed Apr 1 2020 04:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47149 * 2 1 4 4 N 1.46507 * 109.47032 * 240.00066 * 2 1 3 5 5 C 1.36938 * 119.99687 * 74.72374 * 4 2 1 6 6 H 1.07998 * 120.00201 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99591 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00156 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99612 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47392 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46929 * 119.99838 * 9 7 5 12 12 H 1.48501 * 109.47070 * 239.99388 * 9 7 5 13 13 C 1.53001 * 109.47365 * 120.00350 * 2 1 3 14 14 H 1.09002 * 109.70530 * 73.65265 * 13 2 1 15 15 C 1.53193 * 109.58435 * 313.29566 * 13 2 1 16 16 C 1.53038 * 109.31304 * 185.58054 * 15 13 2 17 17 C 1.53046 * 109.53843 * 61.36228 * 16 15 13 18 18 C 1.53186 * 109.31310 * 298.63639 * 17 16 15 19 19 N 1.46927 * 108.77681 * 54.63735 * 18 17 16 20 20 C 1.34779 * 120.63488 * 126.41227 * 19 18 17 21 21 O 1.21275 * 120.00281 * 174.43241 * 20 19 18 22 22 C 1.50698 * 119.99296 * 354.43205 * 20 19 18 23 23 O 1.42906 * 109.46636 * 179.97438 * 22 20 19 24 24 C 1.42897 * 114.00272 * 179.97438 * 23 22 20 25 25 C 1.50695 * 109.47303 * 180.02562 * 24 23 22 26 26 C 1.38649 * 120.79193 * 269.71789 * 25 24 23 27 27 C 1.38206 * 119.16543 * 179.80129 * 26 25 24 28 28 N 1.31869 * 120.76260 * 0.48552 * 27 26 25 29 29 C 1.31876 * 121.72348 * 359.74326 * 28 27 26 30 30 C 1.38203 * 120.76653 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.46907 * 299.99281 * 1 2 3 32 32 H 1.08998 * 109.47470 * 59.99793 * 1 2 3 33 33 H 1.09004 * 109.46946 * 180.02562 * 1 2 3 34 34 H 0.97005 * 119.99996 * 254.72771 * 4 2 1 35 35 H 0.97000 * 120.00144 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.49809 * 65.62757 * 15 13 2 37 37 H 1.08998 * 109.49658 * 305.53047 * 15 13 2 38 38 H 1.09000 * 109.46372 * 181.38437 * 16 15 13 39 39 H 1.09005 * 109.45911 * 301.34385 * 16 15 13 40 40 H 1.09001 * 109.49464 * 58.59185 * 17 16 15 41 41 H 1.09006 * 109.49600 * 178.68588 * 17 16 15 42 42 H 1.08997 * 109.58549 * 174.42025 * 18 17 16 43 43 H 1.09002 * 109.58874 * 294.84871 * 18 17 16 44 44 H 1.08995 * 109.47655 * 299.99457 * 22 20 19 45 45 H 1.09001 * 109.47383 * 60.00621 * 22 20 19 46 46 H 1.09002 * 109.47558 * 300.00737 * 24 23 22 47 47 H 1.09005 * 109.46676 * 60.00271 * 24 23 22 48 48 H 1.07998 * 120.41841 * 0.02562 * 26 25 24 49 49 H 1.07997 * 119.62062 * 180.21658 * 27 26 25 50 50 H 1.08004 * 119.61260 * 179.97438 * 29 28 27 51 51 H 1.08002 * 120.41948 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.9519 -0.0747 -2.4175 6 1 1.5392 0.9200 -2.4988 7 6 2.4141 -0.7293 -3.5510 8 7 2.9157 -1.9420 -3.4520 9 14 2.3242 0.1113 -5.2167 10 1 1.7227 1.4597 -5.0590 11 1 3.6922 0.2418 -5.7798 12 1 1.4860 -0.6998 -6.1358 13 6 2.0400 -0.7213 1.2492 14 1 1.8903 -1.7955 1.1402 15 6 1.2781 -0.2187 2.4795 16 6 1.8857 -0.8392 3.7395 17 6 3.3486 -0.4083 3.8680 18 6 4.1340 -0.9131 2.6535 19 7 3.4705 -0.4394 1.4311 20 6 4.1610 0.2403 0.4942 21 8 3.6292 0.5380 -0.5542 22 6 5.5941 0.6304 0.7497 23 8 6.1046 1.3364 -0.3830 24 6 7.4639 1.7546 -0.2430 25 6 7.8954 2.4854 -1.4883 26 6 8.4694 1.8020 -2.5494 27 6 8.8490 2.5052 -3.6770 28 7 8.6795 3.8111 -3.7464 29 6 8.1413 4.4941 -2.7549 30 6 7.7333 3.8580 -1.5978 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.3886 -1.5842 -1.1232 35 1 3.2390 -2.3993 -4.2440 36 1 0.2298 -0.5070 2.4011 37 1 1.3540 0.8672 2.5358 38 1 1.3298 -0.5025 4.6146 39 1 1.8319 -1.9258 3.6714 40 1 3.4049 0.6794 3.9113 41 1 3.7740 -0.8317 4.7779 42 1 5.1521 -0.5258 2.6901 43 1 4.1549 -2.0029 2.6590 44 1 5.6450 1.2706 1.6304 45 1 6.1904 -0.2664 0.9174 46 1 7.5532 2.4185 0.6168 47 1 8.0992 0.8812 -0.0952 48 1 8.6148 0.7331 -2.4968 49 1 9.2936 1.9797 -4.5092 50 1 8.0188 5.5631 -2.8480 51 1 7.2936 4.4229 -0.7891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566532788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:11 Heat of formation + Delta-G solvation = -11.577601 kcal Electronic energy + Delta-G solvation = -32024.797686 eV Core-core repulsion = 27925.448864 eV Total energy + Delta-G solvation = -4099.348822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.47451 -41.11382 -39.03608 -37.81287 -36.87116 -34.33901 -34.08813 -33.60917 -32.18854 -31.49832 -29.70581 -29.19110 -27.39360 -26.12617 -25.50663 -24.46593 -24.12765 -23.01278 -21.84272 -21.38891 -20.20855 -18.86968 -18.19752 -17.69122 -17.62675 -17.27773 -16.89628 -16.63173 -16.54836 -16.45955 -15.67132 -15.47749 -15.29647 -15.10881 -14.82502 -14.77883 -14.65642 -14.48480 -14.17223 -13.96135 -13.76858 -13.56350 -13.43524 -13.10744 -12.96150 -12.85532 -12.68942 -12.55255 -12.45945 -12.36652 -12.11091 -11.90826 -11.66147 -11.58994 -11.37396 -11.14706 -10.81223 -10.79274 -10.68538 -10.51848 -10.12878 -9.75506 -9.31227 -8.56687 -7.78245 -4.94106 0.11114 0.15729 1.37987 1.41483 1.48585 1.95726 2.03754 2.63592 2.69893 3.13772 3.53077 3.55868 3.61197 3.75154 3.82054 3.89497 3.96085 4.07070 4.10296 4.16003 4.16378 4.18447 4.32077 4.35212 4.38943 4.39871 4.43328 4.44437 4.65678 4.67418 4.76214 4.78978 4.83302 4.88828 4.95126 4.97069 5.09146 5.10963 5.18156 5.22215 5.30927 5.31074 5.43816 5.50049 5.57546 5.62496 5.71431 5.92385 6.13318 6.44286 6.73440 6.94824 7.50025 7.70306 8.30064 8.51961 9.47658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007915 B = 0.004299 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.663084 B = 6511.338978 C = 9242.341732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.179 3.821 3 H 0.032 0.968 4 N -0.695 5.695 5 C -0.158 4.158 6 H 0.050 0.950 7 C -0.090 4.090 8 N -0.978 5.978 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.307 1.307 12 H -0.293 1.293 13 C 0.153 3.847 14 H 0.053 0.947 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.101 3.899 19 N -0.613 5.613 20 C 0.460 3.540 21 O -0.486 6.486 22 C 0.055 3.945 23 O -0.394 6.394 24 C 0.099 3.901 25 C -0.060 4.060 26 C -0.163 4.163 27 C 0.080 3.920 28 N -0.510 5.510 29 C 0.083 3.917 30 C -0.155 4.155 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.045 0.955 34 H 0.363 0.637 35 H 0.239 0.761 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.144 0.856 49 H 0.173 0.827 50 H 0.182 0.818 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 6.327 21.549 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.050 0.950 4 N -0.333 5.333 5 C -0.291 4.291 6 H 0.068 0.932 7 C -0.280 4.280 8 N -0.634 5.634 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.235 1.235 12 H -0.221 1.221 13 C 0.049 3.951 14 H 0.071 0.929 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.165 4.165 18 C -0.021 4.021 19 N -0.351 5.351 20 C 0.246 3.754 21 O -0.356 6.356 22 C -0.024 4.024 23 O -0.313 6.313 24 C 0.024 3.976 25 C -0.068 4.068 26 C -0.183 4.183 27 C -0.076 4.076 28 N -0.220 5.220 29 C -0.074 4.074 30 C -0.174 4.174 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.194 0.806 35 H 0.048 0.952 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.162 0.838 49 H 0.190 0.810 50 H 0.199 0.801 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.347 7.159 19.925 23.143 hybrid contribution 0.020 -0.683 -0.813 1.062 sum 9.367 6.476 19.111 22.247 Atomic orbital electron populations 1.22442 0.98101 1.00834 1.00546 1.20501 0.91395 0.95509 0.85498 0.95031 1.42306 1.72314 1.16162 1.02545 1.19166 1.27380 0.96689 0.85906 0.93231 1.25101 1.04910 0.97923 1.00081 1.69777 1.51919 1.14151 1.27519 0.85358 0.76174 0.77825 0.82440 1.20297 1.23541 1.22071 1.21343 0.80382 0.98154 0.95185 0.92901 1.21972 0.99712 1.00792 0.93399 1.21530 0.96240 1.00708 0.96894 1.21905 0.95326 1.01647 0.97630 1.21991 0.97280 0.99703 0.83079 1.47985 1.09378 1.56938 1.20828 1.21000 0.89207 0.80981 0.84260 1.91252 1.68846 1.50988 1.24557 1.22354 0.92275 0.98073 0.89714 1.88133 1.27489 1.75327 1.40389 1.21519 0.82699 0.98761 0.94647 1.20333 0.95708 0.94550 0.96246 1.22338 0.99532 1.02100 0.94294 1.23107 0.96659 0.90149 0.97648 1.67675 1.14097 1.09595 1.30598 1.23255 0.93736 1.01649 0.88714 1.22369 0.99832 0.94650 1.00560 0.90448 0.95417 0.93609 0.80622 0.95166 0.89874 0.91897 0.89824 0.91684 0.91526 0.88146 0.88140 0.91296 0.87405 0.89106 0.88947 0.90273 0.83796 0.80988 0.80074 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 8.60 71.98 0.62 -5.37 16 2 C 0.18 7.64 1.84 44.99 0.08 7.73 16 3 H 0.03 1.54 6.31 -2.39 -0.02 1.52 16 4 N -0.70 -38.08 3.29 -322.93 -1.06 -39.15 16 5 C -0.16 -9.81 8.28 84.03 0.70 -9.12 16 6 H 0.05 3.14 7.83 -2.91 -0.02 3.12 16 7 C -0.09 -5.82 5.50 84.86 0.47 -5.36 16 8 N -0.98 -65.67 13.06 21.65 0.28 -65.38 16 9 Si 0.95 53.01 29.55 68.60 2.03 55.03 16 10 H -0.28 -14.96 7.11 99.48 0.71 -14.25 16 11 H -0.31 -17.47 7.11 99.48 0.71 -16.76 16 12 H -0.29 -15.93 7.11 99.48 0.71 -15.23 16 13 C 0.15 4.92 2.64 44.97 0.12 5.04 16 14 H 0.05 1.84 8.09 -2.39 -0.02 1.82 16 15 C -0.12 -2.69 4.37 30.67 0.13 -2.56 16 16 C -0.12 -1.78 5.88 30.62 0.18 -1.60 16 17 C -0.13 -1.64 6.08 30.67 0.19 -1.46 16 18 C 0.10 1.79 6.35 86.36 0.55 2.34 16 19 N -0.61 -18.04 2.97 -795.03 -2.36 -20.41 16 20 C 0.46 17.05 7.50 87.66 0.66 17.71 16 21 O -0.49 -24.76 9.52 16.02 0.15 -24.61 16 22 C 0.06 1.47 4.77 71.24 0.34 1.81 16 23 O -0.39 -13.28 9.86 -129.94 -1.28 -14.56 16 24 C 0.10 2.25 6.11 71.23 0.44 2.69 16 25 C -0.06 -1.59 5.55 -19.67 -0.11 -1.70 16 26 C -0.16 -4.46 9.82 22.36 0.22 -4.24 16 27 C 0.08 2.22 11.18 84.68 0.95 3.17 16 28 N -0.51 -14.92 10.36 -195.84 -2.03 -16.95 16 29 C 0.08 2.06 11.18 84.68 0.95 3.01 16 30 C -0.15 -3.70 9.82 22.36 0.22 -3.48 16 31 H 0.08 2.26 6.45 -2.39 -0.02 2.25 16 32 H 0.03 1.15 8.02 -2.39 -0.02 1.14 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.36 21.51 7.68 -92.70 -0.71 20.80 16 35 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.08 1.75 6.71 -2.38 -0.02 1.74 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.10 1.28 5.93 -2.39 -0.01 1.26 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 1.93 7.92 -2.39 -0.02 1.91 16 45 H 0.09 1.95 7.72 -2.39 -0.02 1.94 16 46 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 47 H 0.08 1.46 8.10 -2.38 -0.02 1.44 16 48 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 49 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 50 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 51 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -89.67 401.78 2.63 -87.05 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.21 Total: 30.38 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.69 Total: 8.61 kcal Atomic # 7 Polarization: -136.72 SS G_CDS: -5.17 Total: -141.89 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.13 Total: -39.18 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 2.03 Total: 55.03 kcal Total: -89.67 2.63 -87.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566532788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.468 kcal (2) G-P(sol) polarization free energy of solvation -89.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds