Wall clock time and date at job start Wed Apr 1 2020 04:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 116.99750 * 2 1 4 4 C 1.39149 * 120.47275 * 179.97438 * 3 2 1 5 5 C 1.38534 * 118.37374 * 179.75510 * 4 3 2 6 6 C 1.38263 * 119.22050 * 0.53269 * 5 4 3 7 7 C 1.50701 * 119.55302 * 179.73029 * 6 5 4 8 8 C 1.50702 * 109.46621 * 124.72641 * 7 6 5 9 9 O 1.21277 * 120.00530 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99380 * 179.97438 * 8 7 6 11 11 C 1.46998 * 120.61759 * 5.65040 * 10 8 7 12 12 C 1.53194 * 108.73804 * 126.38687 * 11 10 8 13 13 C 1.53044 * 109.34098 * 54.62120 * 12 11 10 14 14 C 1.53039 * 109.53811 * 298.62002 * 13 12 11 15 15 C 1.46931 * 120.63109 * 185.62719 * 10 8 7 16 16 H 1.08998 * 109.58420 * 113.83911 * 15 10 8 17 17 C 1.53001 * 109.69819 * 353.49235 * 15 10 8 18 18 H 1.09006 * 109.47294 * 307.46263 * 17 15 10 19 19 C 1.53008 * 109.46988 * 187.46552 * 17 15 10 20 20 N 1.46493 * 109.47775 * 67.46521 * 17 15 10 21 21 C 1.36937 * 120.00352 * 194.56791 * 20 17 15 22 22 H 1.07996 * 120.00192 * 0.02562 * 21 20 17 23 23 C 1.38817 * 120.00130 * 179.97438 * 21 20 17 24 24 N 1.31617 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47529 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47164 * 120.00394 * 25 23 21 28 28 H 1.48504 * 109.47004 * 239.99935 * 25 23 21 29 29 N 1.31841 * 120.88394 * 359.45391 * 6 5 4 30 30 C 1.31835 * 121.78515 * 0.27866 * 29 6 5 31 31 H 1.09004 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47058 * 299.99341 * 1 2 3 33 33 H 1.08997 * 109.47824 * 59.99822 * 1 2 3 34 34 H 1.07993 * 120.81014 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.39121 * 180.25595 * 5 4 3 36 36 H 1.08998 * 109.47339 * 4.72450 * 7 6 5 37 37 H 1.08998 * 109.46958 * 244.72387 * 7 6 5 38 38 H 1.08998 * 109.62993 * 6.59956 * 11 10 8 39 39 H 1.08994 * 109.58133 * 246.14964 * 11 10 8 40 40 H 1.09004 * 109.49722 * 294.65810 * 12 11 10 41 41 H 1.08995 * 109.50054 * 174.59072 * 12 11 10 42 42 H 1.09006 * 109.45708 * 58.63959 * 13 12 11 43 43 H 1.08997 * 109.46429 * 178.60078 * 13 12 11 44 44 H 1.09002 * 109.49745 * 181.31134 * 14 13 12 45 45 H 1.08998 * 109.49866 * 301.41554 * 14 13 12 46 46 H 1.09000 * 109.46754 * 305.63423 * 19 17 15 47 47 H 1.09005 * 109.46908 * 65.63522 * 19 17 15 48 48 H 1.08997 * 109.47141 * 185.63214 * 19 17 15 49 49 H 0.97002 * 119.99705 * 14.56486 * 20 17 15 50 50 H 0.97001 * 120.00232 * 180.02562 * 24 23 21 51 51 H 1.07999 * 119.65858 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0047 6 6 3.2078 3.6721 0.0010 7 6 3.8343 5.0427 0.0015 8 6 3.3024 5.8386 -1.1624 9 8 2.4945 5.3417 -1.9182 10 7 3.7245 7.1027 -1.3634 11 6 4.7926 7.6764 -0.5322 12 6 5.8921 8.2202 -1.4499 13 6 5.2776 9.2020 -2.4503 14 6 4.2450 8.4738 -3.3137 15 6 3.1263 7.9330 -2.4177 16 1 2.5861 8.7646 -1.9654 17 6 2.1621 7.0892 -3.2539 18 1 2.6728 6.1911 -3.6015 19 6 1.6851 7.9032 -4.4585 20 7 1.0090 6.7089 -2.4342 21 6 0.1649 5.7174 -2.8579 22 1 0.3493 5.2156 -3.7962 23 6 -0.9274 5.3567 -2.0808 24 7 -1.1519 5.9680 -0.9371 25 14 -2.0786 4.0038 -2.6586 26 1 -1.6094 3.4795 -3.9663 27 1 -2.0905 2.9043 -1.6605 28 1 -3.4507 4.5516 -2.8079 29 7 1.8944 3.5573 0.0005 30 6 1.3002 2.3805 0.0000 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 4.0432 0.4030 0.0005 35 1 5.0931 2.6552 -0.0086 36 1 4.9165 4.9476 -0.0876 37 1 3.5900 5.5535 0.9329 38 1 5.2067 6.9043 0.1163 39 1 4.3882 8.4871 0.0738 40 1 6.3572 7.3949 -1.9891 41 1 6.6445 8.7338 -0.8515 42 1 4.7913 10.0142 -1.9099 43 1 6.0621 9.6090 -3.0882 44 1 3.8247 9.1680 -4.0414 45 1 4.7256 7.6461 -3.8352 46 1 1.2639 8.8480 -4.1147 47 1 2.5284 8.1007 -5.1204 48 1 0.9234 7.3408 -4.9984 49 1 0.8436 7.1594 -1.5912 50 1 -1.9150 5.7157 -0.3939 51 1 0.2215 2.3265 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566534147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:36 Heat of formation + Delta-G solvation = 25.196792 kcal Electronic energy + Delta-G solvation = -33091.018684 eV Core-core repulsion = 28993.264518 eV Total energy + Delta-G solvation = -4097.754165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.43559 -39.81352 -37.98236 -36.59145 -35.16625 -32.54175 -32.11272 -31.99045 -31.63840 -29.75082 -28.01599 -27.65551 -26.90484 -24.63306 -24.10496 -23.07549 -22.58484 -21.86634 -20.44495 -19.85712 -18.60727 -17.87688 -16.83975 -16.58429 -16.10472 -15.81668 -15.62405 -15.05394 -14.84027 -14.50290 -14.28039 -14.09166 -13.93793 -13.80303 -13.49554 -13.24999 -13.05400 -12.92524 -12.59347 -12.42580 -12.38152 -12.05300 -11.85502 -11.81816 -11.62926 -11.52120 -11.25850 -11.08353 -11.03391 -10.78429 -10.76943 -10.63118 -10.51879 -10.31090 -10.03718 -9.57728 -9.35238 -9.29835 -8.74761 -8.52994 -8.12625 -7.91116 -7.79713 -6.29686 -5.34370 -2.52940 1.47195 1.69908 3.36133 3.55118 3.57137 3.63360 3.66129 3.70278 4.24094 4.73865 4.86839 4.87115 4.94747 4.99626 5.01521 5.02064 5.15393 5.28246 5.30065 5.34048 5.40187 5.52276 5.53644 5.60796 5.64090 5.72235 5.76694 5.82753 5.87860 5.92144 5.95466 5.97401 6.01911 6.10207 6.17340 6.20661 6.24362 6.29916 6.38721 6.46145 6.54527 6.59238 6.82816 6.92099 7.07823 7.17811 7.42742 7.51518 8.07060 8.20641 8.60501 8.81343 9.29002 9.93942 10.50966 10.86642 11.90044 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.005060 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.484662 B = 5532.165260 C = 7789.781105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.318 6.318 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.107 3.893 7 C -0.080 4.080 8 C 0.476 3.524 9 O -0.412 6.412 10 N -0.621 5.621 11 C 0.113 3.887 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.128 4.128 15 C 0.151 3.849 16 H 0.061 0.939 17 C 0.183 3.817 18 H 0.059 0.941 19 C -0.169 4.169 20 N -0.687 5.687 21 C -0.175 4.175 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.885 3.115 26 H -0.288 1.288 27 H -0.300 1.300 28 H -0.300 1.300 29 N -0.378 5.378 30 C 0.040 3.960 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.041 0.959 47 H 0.034 0.966 48 H 0.055 0.945 49 H 0.377 0.623 50 H 0.243 0.757 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.701 -1.218 3.322 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.230 6.230 3 C 0.014 3.986 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.032 4.032 7 C -0.121 4.121 8 C 0.259 3.741 9 O -0.277 6.277 10 N -0.361 5.361 11 C -0.011 4.011 12 C -0.172 4.172 13 C -0.156 4.156 14 C -0.167 4.167 15 C 0.047 3.953 16 H 0.079 0.921 17 C 0.073 3.927 18 H 0.076 0.924 19 C -0.229 4.229 20 N -0.328 5.328 21 C -0.307 4.307 22 H 0.075 0.925 23 C -0.208 4.208 24 N -0.585 5.585 25 Si 0.720 3.280 26 H -0.213 1.213 27 H -0.229 1.229 28 H -0.228 1.228 29 N -0.086 5.086 30 C -0.120 4.120 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.211 0.789 50 H 0.053 0.947 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.683 -1.165 2.785 14.990 hybrid contribution -0.500 -1.244 0.108 1.345 sum 14.183 -2.409 2.894 14.674 Atomic orbital electron populations 1.23093 0.78128 1.03737 1.02160 1.85981 1.21538 1.26507 1.89012 1.20168 0.93265 0.85758 0.99375 1.20684 0.91472 0.98354 1.03754 1.21700 1.00619 0.91935 1.01400 1.20593 0.89609 0.94104 0.98873 1.20513 0.99411 0.92165 1.00039 1.20076 0.83527 0.82412 0.88095 1.91172 1.25856 1.67309 1.43330 1.47850 1.38915 1.13314 1.35990 1.21548 0.88131 0.98442 0.92968 1.21914 0.97693 0.99379 0.98213 1.21504 0.98352 0.97943 0.97756 1.21996 0.96510 1.00094 0.98068 1.21419 0.92858 0.93271 0.87736 0.92105 1.20402 0.88367 0.93954 0.89995 0.92385 1.22575 0.99960 1.00590 0.99798 1.42256 1.26082 1.41625 1.22802 1.18902 1.01015 1.09196 1.01602 0.92540 1.24381 0.99337 0.99920 0.97162 1.69626 1.30476 1.44877 1.13477 0.86384 0.81494 0.82994 0.77165 1.21337 1.22876 1.22850 1.67541 1.10433 1.25504 1.05161 1.22987 1.00639 0.86774 1.01580 0.88269 0.92429 0.92195 0.84737 0.84872 0.89133 0.88571 0.90443 0.92261 0.91771 0.91507 0.92043 0.92327 0.90935 0.91815 0.94015 0.94720 0.92628 0.78933 0.94665 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.82 101.05 0.99 1.31 16 2 O -0.32 -4.98 10.51 -19.44 -0.20 -5.18 16 3 C 0.06 1.06 6.71 -39.07 -0.26 0.79 16 4 C -0.12 -1.73 10.13 -39.13 -0.40 -2.13 16 5 C -0.14 -1.98 9.70 -39.46 -0.38 -2.37 16 6 C 0.11 1.91 5.76 -82.58 -0.48 1.43 16 7 C -0.08 -1.23 4.51 -29.03 -0.13 -1.36 16 8 C 0.48 8.97 7.30 -10.98 -0.08 8.89 16 9 O -0.41 -9.74 8.17 5.56 0.05 -9.69 16 10 N -0.62 -9.89 2.97 -165.16 -0.49 -10.38 16 11 C 0.11 1.29 6.33 -3.67 -0.02 1.27 16 12 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 13 C -0.12 -1.23 5.88 -26.69 -0.16 -1.39 16 14 C -0.13 -1.68 4.63 -26.61 -0.12 -1.80 16 15 C 0.15 2.53 2.56 -67.60 -0.17 2.36 16 16 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.18 3.82 1.78 -67.93 -0.12 3.70 16 18 H 0.06 1.36 6.47 -51.93 -0.34 1.02 16 19 C -0.17 -3.22 8.66 37.16 0.32 -2.90 16 20 N -0.69 -17.70 3.07 -53.42 -0.16 -17.87 16 21 C -0.17 -5.07 8.10 -15.06 -0.12 -5.19 16 22 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 25 Si 0.88 23.73 29.55 -169.99 -5.02 18.71 16 26 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 27 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 28 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 29 N -0.38 -8.22 9.21 -9.35 -0.09 -8.31 16 30 C 0.04 0.80 10.22 -17.38 -0.18 0.62 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 33 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 1.42 7.94 -52.49 -0.42 1.01 16 36 H 0.09 1.02 7.18 -51.93 -0.37 0.65 16 37 H 0.10 1.40 8.12 -51.93 -0.42 0.98 16 38 H 0.08 0.74 5.97 -51.93 -0.31 0.43 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.91 6.82 -51.93 -0.35 0.56 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.55 6.81 -51.93 -0.35 0.20 16 48 H 0.05 1.18 7.89 -51.93 -0.41 0.77 16 49 H 0.38 10.59 7.71 -40.82 -0.31 10.28 16 50 H 0.24 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.15 3.13 6.32 -52.49 -0.33 2.80 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -35.24 395.62 -9.00 -44.24 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.19 Total: 9.55 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.57 Total: 1.26 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.02 Total: -64.85 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.16 Total: -14.88 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.02 Total: 18.71 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.24 -9.00 -44.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.440 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds