Wall clock time and date at job start Wed Apr 1 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 116.99750 * 2 1 4 4 C 1.39149 * 120.47275 * 179.97438 * 3 2 1 5 5 C 1.38534 * 118.37374 * 179.75510 * 4 3 2 6 6 C 1.38263 * 119.22050 * 0.53269 * 5 4 3 7 7 C 1.50701 * 119.55302 * 179.73029 * 6 5 4 8 8 C 1.50702 * 109.46621 * 124.72641 * 7 6 5 9 9 O 1.21277 * 120.00530 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99380 * 179.97438 * 8 7 6 11 11 C 1.46998 * 120.61759 * 5.65040 * 10 8 7 12 12 C 1.53194 * 108.73804 * 126.38687 * 11 10 8 13 13 C 1.53044 * 109.34098 * 54.62120 * 12 11 10 14 14 C 1.53039 * 109.53811 * 298.62002 * 13 12 11 15 15 C 1.46931 * 120.63109 * 185.62719 * 10 8 7 16 16 H 1.08998 * 109.58420 * 113.83911 * 15 10 8 17 17 C 1.53001 * 109.69819 * 353.49235 * 15 10 8 18 18 H 1.09006 * 109.47294 * 307.46263 * 17 15 10 19 19 C 1.53008 * 109.46988 * 187.46552 * 17 15 10 20 20 N 1.46493 * 109.47775 * 67.46521 * 17 15 10 21 21 C 1.36937 * 120.00352 * 194.56791 * 20 17 15 22 22 H 1.07996 * 120.00192 * 0.02562 * 21 20 17 23 23 C 1.38817 * 120.00130 * 179.97438 * 21 20 17 24 24 N 1.31617 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47529 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47164 * 120.00394 * 25 23 21 28 28 H 1.48504 * 109.47004 * 239.99935 * 25 23 21 29 29 N 1.31841 * 120.88394 * 359.45391 * 6 5 4 30 30 C 1.31835 * 121.78515 * 0.27866 * 29 6 5 31 31 H 1.09004 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47058 * 299.99341 * 1 2 3 33 33 H 1.08997 * 109.47824 * 59.99822 * 1 2 3 34 34 H 1.07993 * 120.81014 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.39121 * 180.25595 * 5 4 3 36 36 H 1.08998 * 109.47339 * 4.72450 * 7 6 5 37 37 H 1.08998 * 109.46958 * 244.72387 * 7 6 5 38 38 H 1.08998 * 109.62993 * 6.59956 * 11 10 8 39 39 H 1.08994 * 109.58133 * 246.14964 * 11 10 8 40 40 H 1.09004 * 109.49722 * 294.65810 * 12 11 10 41 41 H 1.08995 * 109.50054 * 174.59072 * 12 11 10 42 42 H 1.09006 * 109.45708 * 58.63959 * 13 12 11 43 43 H 1.08997 * 109.46429 * 178.60078 * 13 12 11 44 44 H 1.09002 * 109.49745 * 181.31134 * 14 13 12 45 45 H 1.08998 * 109.49866 * 301.41554 * 14 13 12 46 46 H 1.09000 * 109.46754 * 305.63423 * 19 17 15 47 47 H 1.09005 * 109.46908 * 65.63522 * 19 17 15 48 48 H 1.08997 * 109.47141 * 185.63214 * 19 17 15 49 49 H 0.97002 * 119.99705 * 14.56486 * 20 17 15 50 50 H 0.97001 * 120.00232 * 180.02562 * 24 23 21 51 51 H 1.07999 * 119.65858 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0047 6 6 3.2078 3.6721 0.0010 7 6 3.8343 5.0427 0.0015 8 6 3.3024 5.8386 -1.1624 9 8 2.4945 5.3417 -1.9182 10 7 3.7245 7.1027 -1.3634 11 6 4.7926 7.6764 -0.5322 12 6 5.8921 8.2202 -1.4499 13 6 5.2776 9.2020 -2.4503 14 6 4.2450 8.4738 -3.3137 15 6 3.1263 7.9330 -2.4177 16 1 2.5861 8.7646 -1.9654 17 6 2.1621 7.0892 -3.2539 18 1 2.6728 6.1911 -3.6015 19 6 1.6851 7.9032 -4.4585 20 7 1.0090 6.7089 -2.4342 21 6 0.1649 5.7174 -2.8579 22 1 0.3493 5.2156 -3.7962 23 6 -0.9274 5.3567 -2.0808 24 7 -1.1519 5.9680 -0.9371 25 14 -2.0786 4.0038 -2.6586 26 1 -1.6094 3.4795 -3.9663 27 1 -2.0905 2.9043 -1.6605 28 1 -3.4507 4.5516 -2.8079 29 7 1.8944 3.5573 0.0005 30 6 1.3002 2.3805 0.0000 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 4.0432 0.4030 0.0005 35 1 5.0931 2.6552 -0.0086 36 1 4.9165 4.9476 -0.0876 37 1 3.5900 5.5535 0.9329 38 1 5.2067 6.9043 0.1163 39 1 4.3882 8.4871 0.0738 40 1 6.3572 7.3949 -1.9891 41 1 6.6445 8.7338 -0.8515 42 1 4.7913 10.0142 -1.9099 43 1 6.0621 9.6090 -3.0882 44 1 3.8247 9.1680 -4.0414 45 1 4.7256 7.6461 -3.8352 46 1 1.2639 8.8480 -4.1147 47 1 2.5284 8.1007 -5.1204 48 1 0.9234 7.3408 -4.9984 49 1 0.8436 7.1594 -1.5912 50 1 -1.9150 5.7157 -0.3939 51 1 0.2215 2.3265 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566534147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:35 Heat of formation + Delta-G solvation = 1.273012 kcal Electronic energy + Delta-G solvation = -33092.056096 eV Core-core repulsion = 28993.264518 eV Total energy + Delta-G solvation = -4098.791578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72911 -41.11739 -39.21681 -37.85925 -36.84894 -34.19321 -33.55820 -33.27699 -32.91175 -31.38338 -29.44039 -29.06777 -28.13995 -26.15583 -25.61014 -24.35067 -24.02251 -23.16574 -21.61544 -21.30736 -20.00681 -19.11633 -18.67165 -18.04699 -17.41600 -17.08785 -16.83679 -16.68737 -16.32920 -15.89659 -15.53210 -15.40138 -15.19262 -15.05269 -14.93102 -14.73789 -14.41994 -14.17694 -13.92556 -13.84909 -13.62744 -13.52474 -13.39654 -13.02317 -12.94867 -12.83912 -12.80847 -12.72485 -12.49087 -12.37546 -12.31240 -12.08145 -11.83804 -11.62886 -11.53768 -11.29056 -11.09295 -10.67674 -10.59276 -10.08652 -9.58176 -9.27694 -9.20636 -8.36036 -7.66089 -4.80311 0.18289 0.45231 1.36378 1.37979 1.46246 2.19503 2.27452 2.40292 2.68663 2.93451 3.48263 3.68646 3.71608 3.77949 3.83670 3.94560 4.03577 4.09502 4.18743 4.23570 4.24584 4.31204 4.39768 4.43472 4.46931 4.51708 4.56657 4.58182 4.66351 4.73800 4.78592 4.80777 4.87869 4.94809 5.00571 5.04099 5.14001 5.14768 5.17258 5.24512 5.26502 5.34358 5.47600 5.54551 5.60397 5.64732 5.69947 6.08783 6.17768 6.53147 6.92704 7.29410 7.60924 7.93016 8.39181 8.62695 9.58778 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.005060 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.484662 B = 5532.165260 C = 7789.781105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.318 6.318 3 C 0.059 3.941 4 C -0.113 4.113 5 C -0.116 4.116 6 C 0.084 3.916 7 C -0.074 4.074 8 C 0.467 3.533 9 O -0.475 6.475 10 N -0.621 5.621 11 C 0.104 3.896 12 C -0.126 4.126 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.155 3.845 16 H 0.049 0.951 17 C 0.183 3.817 18 H 0.033 0.967 19 C -0.159 4.159 20 N -0.689 5.689 21 C -0.156 4.156 22 H 0.039 0.961 23 C -0.067 4.067 24 N -0.961 5.961 25 Si 0.931 3.069 26 H -0.286 1.286 27 H -0.298 1.298 28 H -0.301 1.301 29 N -0.433 5.433 30 C 0.003 3.997 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.172 0.828 35 H 0.185 0.815 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.070 0.930 48 H 0.025 0.975 49 H 0.362 0.638 50 H 0.235 0.765 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.082 -1.048 3.631 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.231 6.231 3 C 0.011 3.989 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.055 4.055 7 C -0.114 4.114 8 C 0.253 3.747 9 O -0.345 6.345 10 N -0.359 5.359 11 C -0.018 4.018 12 C -0.164 4.164 13 C -0.153 4.153 14 C -0.158 4.158 15 C 0.051 3.949 16 H 0.067 0.933 17 C 0.074 3.926 18 H 0.050 0.950 19 C -0.219 4.219 20 N -0.327 5.327 21 C -0.289 4.289 22 H 0.057 0.943 23 C -0.258 4.258 24 N -0.615 5.615 25 Si 0.766 3.234 26 H -0.212 1.212 27 H -0.226 1.226 28 H -0.229 1.229 29 N -0.142 5.142 30 C -0.155 4.155 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.190 0.810 35 H 0.202 0.798 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.044 0.956 49 H 0.194 0.806 50 H 0.044 0.956 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 19.116 -0.968 3.075 19.386 hybrid contribution -1.728 -1.276 -0.017 2.148 sum 17.389 -2.243 3.059 17.798 Atomic orbital electron populations 1.23262 0.77175 1.05774 1.01116 1.85974 1.22535 1.25738 1.88806 1.20298 0.94383 0.85151 0.99044 1.21201 0.90503 1.00081 1.02084 1.22190 1.02714 0.90475 0.98196 1.21131 0.88830 0.96366 0.99223 1.20597 1.01902 0.90490 0.98388 1.20817 0.82602 0.83086 0.88230 1.91147 1.28747 1.69053 1.45512 1.47988 1.39423 1.12499 1.35953 1.21915 0.87382 0.99295 0.93190 1.21889 0.97328 0.99328 0.97881 1.21510 0.97996 0.97867 0.97879 1.21920 0.95850 1.00169 0.97851 1.21254 0.93433 0.92017 0.88211 0.93310 1.20468 0.87589 0.93865 0.90654 0.94951 1.22423 1.00411 0.99714 0.99317 1.42252 1.27124 1.40711 1.22578 1.18906 1.00859 1.08827 1.00322 0.94316 1.24835 1.01095 1.02162 0.97704 1.69758 1.30858 1.46373 1.14527 0.85624 0.79855 0.81257 0.76714 1.21216 1.22649 1.22901 1.67386 1.13113 1.26664 1.07005 1.22698 0.99925 0.88099 1.04797 0.84506 0.92453 0.94425 0.81050 0.79798 0.84085 0.88015 0.87999 0.91907 0.91705 0.88393 0.91810 0.90117 0.90334 0.92284 0.93726 0.91108 0.95573 0.80642 0.95614 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.82 113.37 1.11 1.70 16 2 O -0.32 -9.93 10.51 -92.49 -0.97 -10.90 16 3 C 0.06 2.03 6.71 22.60 0.15 2.18 16 4 C -0.11 -3.08 10.13 22.56 0.23 -2.85 16 5 C -0.12 -3.02 9.70 22.35 0.22 -2.80 16 6 C 0.08 2.94 5.76 42.56 0.25 3.18 16 7 C -0.07 -2.10 4.51 29.10 0.13 -1.97 16 8 C 0.47 17.50 7.30 87.66 0.64 18.14 16 9 O -0.48 -23.28 8.17 -3.02 -0.02 -23.31 16 10 N -0.62 -18.93 2.97 -794.84 -2.36 -21.30 16 11 C 0.10 2.02 6.33 86.35 0.55 2.56 16 12 C -0.13 -1.85 6.08 30.67 0.19 -1.66 16 13 C -0.11 -1.95 5.88 30.62 0.18 -1.77 16 14 C -0.12 -2.85 4.63 30.67 0.14 -2.70 16 15 C 0.15 5.11 2.56 44.97 0.12 5.23 16 16 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 17 C 0.18 7.85 1.78 45.00 0.08 7.93 16 18 H 0.03 1.58 6.47 -2.38 -0.02 1.57 16 19 C -0.16 -6.12 8.66 71.98 0.62 -5.50 16 20 N -0.69 -37.20 3.07 -322.93 -0.99 -38.19 16 21 C -0.16 -9.53 8.10 84.03 0.68 -8.84 16 22 H 0.04 2.46 7.83 -2.91 -0.02 2.44 16 23 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 24 N -0.96 -62.98 13.06 21.65 0.28 -62.70 16 25 Si 0.93 51.47 29.55 68.60 2.03 53.50 16 26 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 27 H -0.30 -16.19 7.11 99.48 0.71 -15.48 16 28 H -0.30 -16.47 7.11 99.48 0.71 -15.77 16 29 N -0.43 -19.68 9.21 -183.49 -1.69 -21.37 16 30 C 0.00 0.13 10.22 84.80 0.87 1.00 16 31 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.06 1.55 7.68 -2.38 -0.02 1.53 16 33 H 0.04 1.18 7.68 -2.39 -0.02 1.16 16 34 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.18 2.81 7.94 -2.91 -0.02 2.79 16 36 H 0.14 2.48 7.18 -2.39 -0.02 2.46 16 37 H 0.10 2.79 8.12 -2.39 -0.02 2.77 16 38 H 0.10 1.47 5.97 -2.39 -0.01 1.46 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.77 6.82 -2.39 -0.02 1.76 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.07 2.19 6.81 -2.38 -0.02 2.17 16 48 H 0.03 1.12 7.89 -2.39 -0.02 1.11 16 49 H 0.36 21.40 7.71 -92.71 -0.71 20.69 16 50 H 0.23 15.23 8.31 -92.71 -0.77 14.46 16 51 H 0.12 5.71 6.32 -2.91 -0.02 5.69 16 Total: -1.00 -85.38 395.62 3.10 -82.27 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.22 Total: 31.91 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.61 Total: 10.08 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -4.76 Total: -143.55 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.00 Total: -34.21 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.03 Total: 53.50 kcal Total: -85.38 3.10 -82.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.547 kcal (2) G-P(sol) polarization free energy of solvation -85.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds