Wall clock time and date at job start Wed Apr 1 2020 04:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35908 * 116.99984 * 2 1 4 4 C 1.39141 * 120.47076 * 179.97438 * 3 2 1 5 5 C 1.38534 * 118.37315 * 179.75406 * 4 3 2 6 6 C 1.38257 * 119.22364 * 0.52606 * 5 4 3 7 7 C 1.50693 * 119.56382 * 179.73168 * 6 5 4 8 8 C 1.50704 * 109.47223 * 124.72672 * 7 6 5 9 9 O 1.21277 * 119.99738 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.46923 * 120.62675 * 354.33309 * 10 8 7 12 12 C 1.53195 * 108.77582 * 126.41199 * 11 10 8 13 13 C 1.53041 * 109.33884 * 54.61416 * 12 11 10 14 14 C 1.53039 * 109.53935 * 298.68241 * 13 12 11 15 15 C 1.46924 * 120.63093 * 174.34676 * 10 8 7 16 16 H 1.09001 * 109.58465 * 113.65549 * 15 10 8 17 17 C 1.53007 * 109.58627 * 353.37985 * 15 10 8 18 18 H 1.09002 * 109.46782 * 58.77329 * 17 15 10 19 19 C 1.52996 * 109.46846 * 178.77219 * 17 15 10 20 20 N 1.46498 * 109.46823 * 298.77603 * 17 15 10 21 21 C 1.36933 * 120.00060 * 155.00444 * 20 17 15 22 22 H 1.08005 * 119.99793 * 359.97438 * 21 20 17 23 23 C 1.38809 * 120.00521 * 179.97438 * 21 20 17 24 24 N 1.31626 * 119.99581 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00465 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46786 * 60.00322 * 25 23 21 27 27 H 1.48504 * 109.47209 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47486 * 300.00264 * 25 23 21 29 29 N 1.31853 * 120.88248 * 359.46060 * 6 5 4 30 30 C 1.31841 * 121.77726 * 0.27067 * 29 6 5 31 31 H 1.09006 * 109.47374 * 299.99996 * 1 2 3 32 32 H 1.09002 * 109.47520 * 60.00100 * 1 2 3 33 33 H 1.09003 * 109.47412 * 180.02562 * 1 2 3 34 34 H 1.08004 * 120.81566 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.39326 * 180.26103 * 5 4 3 36 36 H 1.09002 * 109.46818 * 4.73282 * 7 6 5 37 37 H 1.08997 * 109.47490 * 244.73460 * 7 6 5 38 38 H 1.08998 * 109.59341 * 6.62085 * 11 10 8 39 39 H 1.09005 * 109.58498 * 246.19546 * 11 10 8 40 40 H 1.09001 * 109.49971 * 174.58085 * 12 11 10 41 41 H 1.09000 * 109.49656 * 294.64538 * 12 11 10 42 42 H 1.09000 * 109.46301 * 58.67274 * 13 12 11 43 43 H 1.09000 * 109.45699 * 178.63381 * 13 12 11 44 44 H 1.08993 * 109.47241 * 301.36744 * 14 13 12 45 45 H 1.09000 * 109.49900 * 181.28430 * 14 13 12 46 46 H 1.09003 * 109.47208 * 65.97470 * 19 17 15 47 47 H 1.09008 * 109.46576 * 185.96735 * 19 17 15 48 48 H 1.08994 * 109.47289 * 305.96731 * 19 17 15 49 49 H 0.97003 * 120.00307 * 334.99363 * 20 17 15 50 50 H 0.97000 * 119.99633 * 179.97438 * 24 23 21 51 51 H 1.08008 * 119.65464 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4348 1.2952 0.0005 5 6 4.0181 2.5517 -0.0047 6 6 3.2080 3.6720 0.0008 7 6 3.8344 5.0426 0.0013 8 6 3.3026 5.8384 -1.1627 9 8 2.4941 5.3417 -1.9180 10 7 3.7254 7.1022 -1.3644 11 6 4.6078 7.7605 -0.3914 12 6 5.8450 8.2874 -1.1253 13 6 5.4033 9.1866 -2.2822 14 6 4.5642 8.3737 -3.2708 15 6 3.3125 7.8478 -2.5612 16 1 2.6767 8.6837 -2.2696 17 6 2.5409 6.9205 -3.5023 18 1 1.6693 6.5204 -2.9841 19 6 2.0859 7.7070 -4.7332 20 7 3.4091 5.8173 -3.9210 21 6 2.8606 4.6265 -4.3165 22 1 1.7879 4.5006 -4.3194 23 6 3.6832 3.5814 -4.7138 24 7 4.9904 3.7350 -4.7108 25 14 2.9350 1.9568 -5.2527 26 1 2.0515 2.1833 -6.4247 27 1 4.0186 1.0118 -5.6244 28 1 2.1401 1.3836 -4.1370 29 7 1.8944 3.5574 0.0003 30 6 1.3002 2.3804 -0.0002 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 4.0432 0.4028 0.0005 35 1 5.0931 2.6550 -0.0087 36 1 4.9166 4.9474 -0.0879 37 1 3.5902 5.5534 0.9326 38 1 4.9128 7.0424 0.3698 39 1 4.0798 8.5909 0.0774 40 1 6.4615 8.8613 -0.4334 41 1 6.4210 7.4486 -1.5159 42 1 4.8069 10.0120 -1.8934 43 1 6.2825 9.5821 -2.7909 44 1 5.1520 7.5341 -3.6417 45 1 4.2691 9.0089 -4.1059 46 1 2.9579 8.0169 -5.3092 47 1 1.4474 7.0762 -5.3518 48 1 1.5282 8.5880 -4.4158 49 1 4.3725 5.9303 -3.9182 50 1 5.5652 3.0045 -4.9880 51 1 0.2215 2.3264 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566534152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:39 Heat of formation + Delta-G solvation = 16.439278 kcal Electronic energy + Delta-G solvation = -33196.044793 eV Core-core repulsion = 29097.910873 eV Total energy + Delta-G solvation = -4098.133919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.47828 -39.83808 -38.03548 -36.56741 -35.16743 -32.45311 -32.14150 -32.05223 -31.63313 -29.55899 -28.03336 -27.91740 -26.99817 -24.60316 -23.84164 -23.21118 -22.90147 -21.91273 -20.57544 -19.74528 -18.26672 -17.93808 -16.89492 -16.81780 -16.14302 -15.83984 -15.69074 -15.12368 -14.67960 -14.43338 -14.13756 -14.08376 -13.96263 -13.86923 -13.65043 -13.39641 -13.00179 -12.84044 -12.62698 -12.47253 -12.28043 -12.04729 -11.90666 -11.85946 -11.63735 -11.41914 -11.30672 -11.08760 -11.03801 -10.75906 -10.61808 -10.58648 -10.42436 -10.28247 -10.03341 -9.68637 -9.34815 -9.28826 -9.03370 -8.64266 -8.11550 -7.86941 -7.79148 -6.51143 -5.44792 -2.65393 1.46563 1.65217 3.31300 3.53540 3.59483 3.63089 3.66120 3.71967 4.16372 4.64469 4.86655 4.91261 4.92082 5.00846 5.06020 5.12257 5.12499 5.17104 5.28477 5.40771 5.45061 5.49989 5.59752 5.60257 5.67825 5.73142 5.76747 5.82108 5.85996 5.91222 5.93493 5.98658 6.09881 6.17004 6.24264 6.26630 6.33817 6.38559 6.42230 6.52646 6.60074 6.67980 6.79204 6.98083 7.10443 7.21409 7.39086 7.53501 8.05711 8.20211 8.39577 8.74583 9.27009 9.86336 10.43325 10.80006 11.79628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.004866 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.112211 B = 5752.835916 C = 7234.341690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.067 3.933 4 C -0.108 4.108 5 C -0.117 4.117 6 C 0.122 3.878 7 C -0.082 4.082 8 C 0.506 3.494 9 O -0.437 6.437 10 N -0.618 5.618 11 C 0.113 3.887 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.150 3.850 16 H 0.058 0.942 17 C 0.168 3.832 18 H 0.085 0.915 19 C -0.169 4.169 20 N -0.704 5.704 21 C -0.168 4.168 22 H 0.061 0.939 23 C -0.028 4.028 24 N -0.948 5.948 25 Si 0.891 3.109 26 H -0.293 1.293 27 H -0.296 1.296 28 H -0.293 1.293 29 N -0.418 5.418 30 C 0.026 3.974 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.031 0.969 49 H 0.377 0.623 50 H 0.246 0.754 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 5.086 14.277 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.020 3.980 4 C -0.135 4.135 5 C -0.137 4.137 6 C -0.017 4.017 7 C -0.123 4.123 8 C 0.291 3.709 9 O -0.305 6.305 10 N -0.356 5.356 11 C -0.010 4.010 12 C -0.174 4.174 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.046 3.954 16 H 0.076 0.924 17 C 0.058 3.942 18 H 0.102 0.898 19 C -0.230 4.230 20 N -0.345 5.345 21 C -0.300 4.300 22 H 0.079 0.921 23 C -0.220 4.220 24 N -0.600 5.600 25 Si 0.725 3.275 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.220 1.220 29 N -0.127 5.127 30 C -0.133 4.133 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.050 0.950 49 H 0.212 0.788 50 H 0.056 0.944 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.554 5.146 13.814 14.960 hybrid contribution 0.466 -1.608 -0.515 1.752 sum -2.088 3.537 13.299 13.918 Atomic orbital electron populations 1.23058 0.78480 1.03837 1.01576 1.86025 1.21326 1.26533 1.88983 1.20028 0.93281 0.85563 0.99163 1.20777 0.91594 0.98655 1.02427 1.21728 1.01165 0.91732 0.99057 1.20384 0.89084 0.94286 0.97979 1.20528 1.00717 0.91849 0.99180 1.19911 0.83882 0.80983 0.86110 1.90905 1.29923 1.67730 1.41929 1.47862 1.50974 1.13969 1.22819 1.21555 0.90833 0.97228 0.91423 1.21923 0.97530 1.00067 0.97910 1.21491 0.99556 0.97761 0.96561 1.21981 0.97161 1.00199 0.97712 1.21485 0.94867 0.93894 0.85137 0.92420 1.20708 0.95452 0.87248 0.90795 0.89764 1.22593 1.00371 0.98888 1.01102 1.42369 1.04445 1.09682 1.78045 1.18991 0.91214 0.89417 1.30406 0.92100 1.24465 0.95302 0.97478 1.04783 1.69622 1.01508 1.31634 1.57270 0.86449 0.77496 0.85357 0.78186 1.22051 1.22276 1.22041 1.67233 1.11474 1.25956 1.08040 1.22722 1.00073 0.87129 1.03391 0.92655 0.92348 0.88323 0.84488 0.84409 0.88413 0.88748 0.90458 0.92390 0.91659 0.91192 0.92527 0.92323 0.90398 0.91332 0.93664 0.93116 0.95005 0.78782 0.94418 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.82 101.05 0.99 1.28 16 2 O -0.32 -4.87 10.51 -19.45 -0.20 -5.08 16 3 C 0.07 1.14 6.71 -39.08 -0.26 0.88 16 4 C -0.11 -1.81 10.13 -39.14 -0.40 -2.21 16 5 C -0.12 -1.97 9.70 -39.47 -0.38 -2.36 16 6 C 0.12 2.21 5.76 -82.58 -0.48 1.73 16 7 C -0.08 -1.29 4.45 -29.04 -0.13 -1.42 16 8 C 0.51 9.71 7.03 -10.98 -0.08 9.63 16 9 O -0.44 -10.33 8.42 5.56 0.05 -10.28 16 10 N -0.62 -10.05 2.96 -165.22 -0.49 -10.54 16 11 C 0.11 1.35 6.35 -3.71 -0.02 1.33 16 12 C -0.14 -1.56 6.08 -26.61 -0.16 -1.72 16 13 C -0.12 -1.41 5.89 -26.69 -0.16 -1.57 16 14 C -0.13 -2.06 4.80 -26.61 -0.13 -2.19 16 15 C 0.15 2.54 2.75 -67.60 -0.19 2.35 16 16 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 17 C 0.17 3.53 1.89 -67.93 -0.13 3.40 16 18 H 0.08 2.00 5.94 -52.03 -0.31 1.69 16 19 C -0.17 -3.24 9.02 37.16 0.34 -2.90 16 20 N -0.70 -17.81 3.43 -53.42 -0.18 -18.00 16 21 C -0.17 -4.89 8.05 -15.06 -0.12 -5.01 16 22 H 0.06 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.03 -0.83 5.50 -17.43 -0.10 -0.93 16 24 N -0.95 -29.44 13.06 55.49 0.72 -28.71 16 25 Si 0.89 24.50 29.55 -169.99 -5.02 19.47 16 26 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 27 H -0.30 -8.18 7.11 56.52 0.40 -7.78 16 28 H -0.29 -8.17 7.11 56.52 0.40 -7.77 16 29 N -0.42 -8.05 9.21 -9.35 -0.09 -8.14 16 30 C 0.03 0.45 10.22 -17.38 -0.18 0.27 16 31 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 32 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 35 H 0.14 1.97 7.94 -52.49 -0.42 1.56 16 36 H 0.10 1.37 7.64 -51.93 -0.40 0.97 16 37 H 0.09 1.20 7.71 -51.93 -0.40 0.80 16 38 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.48 6.25 -51.93 -0.32 1.16 16 45 H 0.07 1.03 6.94 -51.93 -0.36 0.67 16 46 H 0.04 0.86 6.94 -51.93 -0.36 0.50 16 47 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.38 10.13 5.88 -40.82 -0.24 9.89 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.15 2.23 6.32 -52.48 -0.33 1.90 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -35.87 392.97 -8.89 -44.76 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.02 Total: 10.03 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.58 Total: 0.56 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -0.03 Total: -65.39 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.16 Total: -15.36 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.02 Total: 19.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.87 -8.89 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.201 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds