Wall clock time and date at job start Wed Apr 1 2020 04:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35908 * 116.99984 * 2 1 4 4 C 1.39141 * 120.47076 * 179.97438 * 3 2 1 5 5 C 1.38534 * 118.37315 * 179.75406 * 4 3 2 6 6 C 1.38257 * 119.22364 * 0.52606 * 5 4 3 7 7 C 1.50693 * 119.56382 * 179.73168 * 6 5 4 8 8 C 1.50704 * 109.47223 * 124.72672 * 7 6 5 9 9 O 1.21277 * 119.99738 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.46923 * 120.62675 * 354.33309 * 10 8 7 12 12 C 1.53195 * 108.77582 * 126.41199 * 11 10 8 13 13 C 1.53041 * 109.33884 * 54.61416 * 12 11 10 14 14 C 1.53039 * 109.53935 * 298.68241 * 13 12 11 15 15 C 1.46924 * 120.63093 * 174.34676 * 10 8 7 16 16 H 1.09001 * 109.58465 * 113.65549 * 15 10 8 17 17 C 1.53007 * 109.58627 * 353.37985 * 15 10 8 18 18 H 1.09002 * 109.46782 * 58.77329 * 17 15 10 19 19 C 1.52996 * 109.46846 * 178.77219 * 17 15 10 20 20 N 1.46498 * 109.46823 * 298.77603 * 17 15 10 21 21 C 1.36933 * 120.00060 * 155.00444 * 20 17 15 22 22 H 1.08005 * 119.99793 * 359.97438 * 21 20 17 23 23 C 1.38809 * 120.00521 * 179.97438 * 21 20 17 24 24 N 1.31626 * 119.99581 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00465 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46786 * 60.00322 * 25 23 21 27 27 H 1.48504 * 109.47209 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47486 * 300.00264 * 25 23 21 29 29 N 1.31853 * 120.88248 * 359.46060 * 6 5 4 30 30 C 1.31841 * 121.77726 * 0.27067 * 29 6 5 31 31 H 1.09006 * 109.47374 * 299.99996 * 1 2 3 32 32 H 1.09002 * 109.47520 * 60.00100 * 1 2 3 33 33 H 1.09003 * 109.47412 * 180.02562 * 1 2 3 34 34 H 1.08004 * 120.81566 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.39326 * 180.26103 * 5 4 3 36 36 H 1.09002 * 109.46818 * 4.73282 * 7 6 5 37 37 H 1.08997 * 109.47490 * 244.73460 * 7 6 5 38 38 H 1.08998 * 109.59341 * 6.62085 * 11 10 8 39 39 H 1.09005 * 109.58498 * 246.19546 * 11 10 8 40 40 H 1.09001 * 109.49971 * 174.58085 * 12 11 10 41 41 H 1.09000 * 109.49656 * 294.64538 * 12 11 10 42 42 H 1.09000 * 109.46301 * 58.67274 * 13 12 11 43 43 H 1.09000 * 109.45699 * 178.63381 * 13 12 11 44 44 H 1.08993 * 109.47241 * 301.36744 * 14 13 12 45 45 H 1.09000 * 109.49900 * 181.28430 * 14 13 12 46 46 H 1.09003 * 109.47208 * 65.97470 * 19 17 15 47 47 H 1.09008 * 109.46576 * 185.96735 * 19 17 15 48 48 H 1.08994 * 109.47289 * 305.96731 * 19 17 15 49 49 H 0.97003 * 120.00307 * 334.99363 * 20 17 15 50 50 H 0.97000 * 119.99633 * 179.97438 * 24 23 21 51 51 H 1.08008 * 119.65464 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4348 1.2952 0.0005 5 6 4.0181 2.5517 -0.0047 6 6 3.2080 3.6720 0.0008 7 6 3.8344 5.0426 0.0013 8 6 3.3026 5.8384 -1.1627 9 8 2.4941 5.3417 -1.9180 10 7 3.7254 7.1022 -1.3644 11 6 4.6078 7.7605 -0.3914 12 6 5.8450 8.2874 -1.1253 13 6 5.4033 9.1866 -2.2822 14 6 4.5642 8.3737 -3.2708 15 6 3.3125 7.8478 -2.5612 16 1 2.6767 8.6837 -2.2696 17 6 2.5409 6.9205 -3.5023 18 1 1.6693 6.5204 -2.9841 19 6 2.0859 7.7070 -4.7332 20 7 3.4091 5.8173 -3.9210 21 6 2.8606 4.6265 -4.3165 22 1 1.7879 4.5006 -4.3194 23 6 3.6832 3.5814 -4.7138 24 7 4.9904 3.7350 -4.7108 25 14 2.9350 1.9568 -5.2527 26 1 2.0515 2.1833 -6.4247 27 1 4.0186 1.0118 -5.6244 28 1 2.1401 1.3836 -4.1370 29 7 1.8944 3.5574 0.0003 30 6 1.3002 2.3804 -0.0002 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 4.0432 0.4028 0.0005 35 1 5.0931 2.6550 -0.0087 36 1 4.9166 4.9474 -0.0879 37 1 3.5902 5.5534 0.9326 38 1 4.9128 7.0424 0.3698 39 1 4.0798 8.5909 0.0774 40 1 6.4615 8.8613 -0.4334 41 1 6.4210 7.4486 -1.5159 42 1 4.8069 10.0120 -1.8934 43 1 6.2825 9.5821 -2.7909 44 1 5.1520 7.5341 -3.6417 45 1 4.2691 9.0089 -4.1059 46 1 2.9579 8.0169 -5.3092 47 1 1.4474 7.0762 -5.3518 48 1 1.5282 8.5880 -4.4158 49 1 4.3725 5.9303 -3.9182 50 1 5.5652 3.0045 -4.9880 51 1 0.2215 2.3264 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566534152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:38 Heat of formation + Delta-G solvation = -7.256982 kcal Electronic energy + Delta-G solvation = -33197.072340 eV Core-core repulsion = 29097.910873 eV Total energy + Delta-G solvation = -4099.161466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76406 -41.15798 -39.23807 -37.89898 -36.83279 -34.20748 -33.57498 -33.34521 -32.94570 -31.20248 -29.63669 -29.13550 -28.12009 -26.01388 -25.56422 -24.60774 -24.25643 -23.22453 -21.75292 -21.25043 -19.61163 -19.14674 -18.97713 -18.08629 -17.49614 -17.12984 -16.80370 -16.59299 -16.21278 -15.96938 -15.64374 -15.47246 -15.30779 -15.06344 -14.94269 -14.79730 -14.39250 -14.11707 -14.01074 -13.94063 -13.72686 -13.52716 -13.26252 -13.05163 -12.97770 -12.83875 -12.76967 -12.65826 -12.63163 -12.29995 -12.22243 -12.18773 -11.89267 -11.63893 -11.49028 -11.31537 -11.16419 -10.79621 -10.64885 -10.34578 -9.53403 -9.25721 -9.19132 -8.56980 -7.75991 -4.92253 0.16366 0.34564 1.35463 1.38313 1.43036 2.18183 2.24452 2.40634 2.63684 2.86518 3.40583 3.58045 3.69106 3.73237 3.83111 4.01119 4.03699 4.09635 4.16136 4.25630 4.30142 4.33126 4.37487 4.40714 4.45313 4.51673 4.54498 4.61082 4.63701 4.70427 4.73838 4.80497 4.90371 4.93387 4.98415 5.02746 5.09936 5.14467 5.15235 5.23151 5.32522 5.38394 5.49152 5.55463 5.62786 5.64403 5.70885 6.08370 6.21022 6.47813 6.89637 7.08339 7.54336 7.88400 8.33344 8.59157 9.48307 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.004866 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.112211 B = 5752.835916 C = 7234.341690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.060 3.940 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.100 3.900 7 C -0.076 4.076 8 C 0.495 3.505 9 O -0.496 6.496 10 N -0.617 5.617 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.111 4.111 14 C -0.125 4.125 15 C 0.154 3.846 16 H 0.083 0.917 17 C 0.164 3.836 18 H 0.056 0.944 19 C -0.159 4.159 20 N -0.701 5.701 21 C -0.147 4.147 22 H 0.041 0.959 23 C -0.081 4.081 24 N -0.971 5.971 25 Si 0.938 3.062 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.303 1.303 29 N -0.444 5.444 30 C 0.008 3.992 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.128 0.872 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.024 0.976 48 H 0.067 0.933 49 H 0.369 0.631 50 H 0.239 0.761 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 6.983 16.065 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.012 3.988 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.039 4.039 7 C -0.116 4.116 8 C 0.281 3.719 9 O -0.368 6.368 10 N -0.354 5.354 11 C -0.016 4.016 12 C -0.170 4.170 13 C -0.148 4.148 14 C -0.164 4.164 15 C 0.050 3.950 16 H 0.101 0.899 17 C 0.056 3.944 18 H 0.074 0.926 19 C -0.219 4.219 20 N -0.341 5.341 21 C -0.281 4.281 22 H 0.059 0.941 23 C -0.271 4.271 24 N -0.627 5.627 25 Si 0.772 3.228 26 H -0.216 1.216 27 H -0.223 1.223 28 H -0.232 1.232 29 N -0.153 5.153 30 C -0.150 4.150 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.203 0.797 50 H 0.048 0.952 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.093 7.102 15.626 17.291 hybrid contribution 0.201 -2.133 -1.018 2.372 sum -1.892 4.969 14.608 15.546 Atomic orbital electron populations 1.23384 0.76345 1.05986 1.02097 1.86010 1.23575 1.25733 1.88730 1.20174 0.93704 0.86072 0.98799 1.21147 0.92008 0.99490 1.02263 1.22050 1.02294 0.91612 0.98592 1.20830 0.89105 0.95718 0.98262 1.20577 1.01225 0.90605 0.99204 1.20559 0.83131 0.81793 0.86368 1.90883 1.32542 1.69165 1.44223 1.47981 1.50935 1.13346 1.23152 1.21922 0.90460 0.98333 0.90849 1.21909 0.97399 0.99482 0.98224 1.21478 0.99583 0.97824 0.95923 1.21885 0.96451 0.99246 0.98782 1.21379 0.95414 0.93350 0.84874 0.89881 1.20758 0.94567 0.86981 0.92082 0.92622 1.22430 1.00246 0.99472 0.99799 1.42370 1.04360 1.09705 1.77644 1.18992 0.90177 0.90759 1.28146 0.94092 1.24901 0.95781 0.99683 1.06750 1.69729 1.01999 1.31768 1.59172 0.85686 0.76671 0.82947 0.77491 1.21605 1.22262 1.23160 1.67232 1.12355 1.26808 1.08933 1.23058 1.01099 0.87156 1.03694 0.90744 0.93193 0.85408 0.82669 0.82312 0.86721 0.85455 0.88565 0.89677 0.88161 0.93712 0.90138 0.91413 0.94475 0.90843 0.93624 0.95648 0.91377 0.79697 0.95179 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.82 113.37 1.11 1.45 16 2 O -0.33 -10.01 10.51 -92.51 -0.97 -10.98 16 3 C 0.06 2.07 6.71 22.60 0.15 2.22 16 4 C -0.12 -4.13 10.13 22.56 0.23 -3.90 16 5 C -0.13 -4.24 9.70 22.35 0.22 -4.02 16 6 C 0.10 3.62 5.76 42.56 0.25 3.87 16 7 C -0.08 -2.30 4.45 29.10 0.13 -2.17 16 8 C 0.50 18.80 7.03 87.66 0.62 19.41 16 9 O -0.50 -24.05 8.42 -3.02 -0.03 -24.07 16 10 N -0.62 -18.99 2.96 -795.01 -2.36 -21.34 16 11 C 0.11 2.12 6.35 86.36 0.55 2.67 16 12 C -0.13 -2.55 6.08 30.67 0.19 -2.36 16 13 C -0.11 -2.29 5.89 30.62 0.18 -2.11 16 14 C -0.13 -3.69 4.80 30.67 0.15 -3.55 16 15 C 0.15 4.96 2.75 44.98 0.12 5.08 16 16 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 17 C 0.16 6.97 1.89 44.99 0.08 7.06 16 18 H 0.06 2.73 5.94 -3.95 -0.02 2.71 16 19 C -0.16 -6.05 9.02 71.98 0.65 -5.40 16 20 N -0.70 -36.41 3.43 -322.94 -1.11 -37.52 16 21 C -0.15 -8.85 8.05 84.03 0.68 -8.17 16 22 H 0.04 2.59 7.83 -2.91 -0.02 2.57 16 23 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 24 N -0.97 -61.80 13.06 21.65 0.28 -61.51 16 25 Si 0.94 51.88 29.55 68.60 2.03 53.90 16 26 H -0.29 -15.55 7.11 99.48 0.71 -14.85 16 27 H -0.30 -16.24 7.11 99.48 0.71 -15.53 16 28 H -0.30 -17.09 7.11 99.48 0.71 -16.38 16 29 N -0.44 -17.41 9.21 -183.49 -1.69 -19.10 16 30 C 0.01 0.30 10.22 84.80 0.87 1.17 16 31 H 0.07 1.29 7.68 -2.38 -0.02 1.27 16 32 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 33 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.16 4.44 7.94 -2.91 -0.02 4.42 16 36 H 0.11 3.02 7.64 -2.39 -0.02 3.00 16 37 H 0.13 2.91 7.71 -2.39 -0.02 2.89 16 38 H 0.10 1.57 5.93 -2.39 -0.01 1.56 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 1.41 6.25 -2.39 -0.01 1.39 16 45 H 0.07 2.06 6.94 -2.39 -0.02 2.04 16 46 H 0.04 1.71 6.94 -2.39 -0.02 1.69 16 47 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.37 20.40 5.88 -92.71 -0.55 19.86 16 50 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 51 H 0.17 5.05 6.32 -2.91 -0.02 5.03 16 Total: -1.00 -82.03 392.97 3.18 -78.86 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.38 Total: 35.07 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 6.63 Total: 6.69 kcal Atomic # 7 Polarization: -134.60 SS G_CDS: -4.87 Total: -139.47 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.00 Total: -35.06 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.03 Total: 53.90 kcal Total: -82.03 3.18 -78.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.598 kcal (2) G-P(sol) polarization free energy of solvation -82.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds