Wall clock time and date at job start Wed Apr 1 2020 04:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35914 * 117.00038 * 2 1 4 4 C 1.39143 * 120.47111 * 180.02562 * 3 2 1 5 5 C 1.38535 * 118.37002 * 179.97438 * 4 3 2 6 6 C 1.38250 * 119.22184 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.55480 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47335 * 124.99789 * 7 6 5 9 9 O 1.21290 * 119.99609 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00269 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.62814 * 5.89610 * 10 8 7 12 12 C 1.53191 * 108.77781 * 233.63185 * 11 10 8 13 13 C 1.53049 * 109.31190 * 305.36901 * 12 11 10 14 14 C 1.53068 * 109.65671 * 61.29808 * 13 12 11 15 15 C 1.46923 * 120.63360 * 185.92589 * 10 8 7 16 16 H 1.09001 * 109.58571 * 246.29549 * 15 10 8 17 17 C 1.53005 * 109.58656 * 6.57848 * 15 10 8 18 18 H 1.09003 * 109.46613 * 302.25769 * 17 15 10 19 19 C 1.52996 * 109.47095 * 182.25695 * 17 15 10 20 20 N 1.46497 * 109.47075 * 62.25555 * 17 15 10 21 21 C 1.36938 * 120.00113 * 205.00200 * 20 17 15 22 22 H 1.07998 * 119.99698 * 359.97438 * 21 20 17 23 23 C 1.38815 * 120.00015 * 180.02562 * 21 20 17 24 24 N 1.31620 * 120.00033 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99978 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47184 * 60.00066 * 25 23 21 27 27 H 1.48500 * 109.47404 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47284 * 300.00549 * 25 23 21 29 29 N 1.31844 * 120.88804 * 0.25608 * 6 5 4 30 30 C 1.31839 * 121.77886 * 359.47450 * 29 6 5 31 31 H 1.09004 * 109.46960 * 60.00358 * 1 2 3 32 32 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47225 * 300.00680 * 1 2 3 34 34 H 1.07997 * 120.80987 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.38374 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47138 * 4.99771 * 7 6 5 37 37 H 1.08996 * 109.46783 * 244.99814 * 7 6 5 38 38 H 1.08991 * 109.58848 * 353.42349 * 11 10 8 39 39 H 1.09007 * 109.58384 * 113.84499 * 11 10 8 40 40 H 1.09000 * 109.49830 * 65.31627 * 12 11 10 41 41 H 1.08996 * 109.49775 * 185.41799 * 12 11 10 42 42 H 1.09003 * 109.45397 * 181.38379 * 13 12 11 43 43 H 1.08995 * 109.45678 * 301.35778 * 13 12 11 44 44 H 1.09003 * 109.62156 * 178.82538 * 14 13 12 45 45 H 1.09000 * 109.38966 * 58.72706 * 14 13 12 46 46 H 1.09000 * 109.47188 * 294.95340 * 19 17 15 47 47 H 1.08999 * 109.47527 * 54.95751 * 19 17 15 48 48 H 1.09000 * 109.47186 * 174.95397 * 19 17 15 49 49 H 0.96999 * 119.99847 * 24.99947 * 20 17 15 50 50 H 0.96997 * 119.99827 * 179.97438 * 24 23 21 51 51 H 1.08009 * 119.65691 * 180.27171 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4349 1.2952 -0.0005 5 6 4.0182 2.5518 -0.0011 6 6 3.2080 3.6720 -0.0016 7 6 3.8345 5.0427 -0.0016 8 6 3.3027 5.8381 -1.1658 9 8 2.4941 5.3411 -1.9209 10 7 3.7256 7.1017 -1.3679 11 6 4.7975 7.6735 -0.5416 12 6 4.3046 8.9923 0.0622 13 6 3.8175 9.9119 -1.0600 14 6 2.6495 9.2514 -1.7965 15 6 3.1231 7.9339 -2.4181 16 1 3.8637 8.1399 -3.1909 17 6 1.9304 7.1991 -3.0336 18 1 2.2607 6.2394 -3.4309 19 6 1.3396 8.0434 -4.1645 20 7 0.9103 6.9772 -2.0058 21 6 0.0210 5.9440 -2.1355 22 1 0.0714 5.2930 -2.9958 23 6 -0.9459 5.7341 -1.1619 24 7 -1.0082 6.5284 -0.1142 25 14 -2.1594 4.3251 -1.3392 26 1 -1.4198 3.0386 -1.3935 27 1 -3.0824 4.3173 -0.1759 28 1 -2.9413 4.4996 -2.5896 29 7 1.8945 3.5573 0.0035 30 6 1.3003 2.3804 -0.0011 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 4.0432 0.4029 -0.0005 35 1 5.0933 2.6550 -0.0011 36 1 4.9167 4.9475 -0.0906 37 1 3.5902 5.5538 0.9296 38 1 5.0528 6.9784 0.2582 39 1 5.6755 7.8604 -1.1601 40 1 3.4837 8.7928 0.7510 41 1 5.1215 9.4746 0.5989 42 1 3.4890 10.8605 -0.6353 43 1 4.6318 10.0909 -1.7620 44 1 2.2895 9.9157 -2.5822 45 1 1.8432 9.0517 -1.0908 46 1 0.9285 8.9652 -3.7532 47 1 2.1215 8.2839 -4.8849 48 1 0.5480 7.4824 -4.6613 49 1 0.8649 7.5621 -1.2333 50 1 -1.6841 6.3819 0.5659 51 1 0.2216 2.3264 -0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566534154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:46 Heat of formation + Delta-G solvation = 20.529050 kcal Electronic energy + Delta-G solvation = -33328.869832 eV Core-core repulsion = 29230.913258 eV Total energy + Delta-G solvation = -4097.956574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.45406 -39.82434 -37.99396 -36.57227 -35.12983 -32.43543 -32.11119 -31.98719 -31.61145 -29.51238 -27.99896 -27.88062 -26.93312 -24.59614 -23.79474 -23.18735 -22.85106 -21.85402 -20.55722 -19.71254 -18.25989 -17.89275 -16.83198 -16.80903 -16.05612 -15.82171 -15.64624 -15.14689 -14.71710 -14.40588 -14.11181 -14.03859 -13.95141 -13.82049 -13.48969 -13.38299 -13.21968 -12.72778 -12.58162 -12.49658 -12.22797 -12.03333 -11.85340 -11.82273 -11.61834 -11.32567 -11.29268 -11.09799 -10.99312 -10.73154 -10.56706 -10.55763 -10.39377 -10.27302 -10.00874 -9.66049 -9.36486 -9.20594 -8.74770 -8.54895 -8.09474 -7.88818 -7.77150 -6.42675 -5.33959 -2.53481 1.45535 1.68600 3.34146 3.50283 3.56834 3.63456 3.64750 3.71380 4.23391 4.74248 4.91689 4.92889 4.96624 5.02260 5.08177 5.12146 5.16261 5.27507 5.31437 5.38008 5.49001 5.50949 5.59843 5.60160 5.69084 5.74255 5.79747 5.83561 5.89585 5.94897 5.96177 6.03103 6.12053 6.18926 6.26608 6.28398 6.35142 6.37562 6.40854 6.54619 6.63086 6.70279 6.81304 7.00634 7.12998 7.22001 7.40848 7.55129 8.13526 8.19442 8.59848 8.84268 9.25088 9.96808 10.52682 10.89351 11.91339 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.005062 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.120902 B = 5530.208308 C = 7338.949286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.318 6.318 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.108 3.892 7 C -0.083 4.083 8 C 0.508 3.492 9 O -0.442 6.442 10 N -0.618 5.618 11 C 0.113 3.887 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.150 3.850 16 H 0.057 0.943 17 C 0.167 3.833 18 H 0.084 0.916 19 C -0.169 4.169 20 N -0.702 5.702 21 C -0.164 4.164 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.944 5.944 25 Si 0.889 3.111 26 H -0.294 1.294 27 H -0.299 1.299 28 H -0.297 1.297 29 N -0.375 5.375 30 C 0.036 3.964 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.029 0.971 48 H 0.050 0.950 49 H 0.378 0.622 50 H 0.244 0.756 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.619 -2.397 1.638 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.230 6.230 3 C 0.014 3.986 4 C -0.142 4.142 5 C -0.157 4.157 6 C -0.031 4.031 7 C -0.123 4.123 8 C 0.293 3.707 9 O -0.310 6.310 10 N -0.356 5.356 11 C -0.010 4.010 12 C -0.174 4.174 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.046 3.954 16 H 0.075 0.925 17 C 0.056 3.944 18 H 0.102 0.898 19 C -0.230 4.230 20 N -0.344 5.344 21 C -0.296 4.296 22 H 0.075 0.925 23 C -0.207 4.207 24 N -0.596 5.596 25 Si 0.724 3.276 26 H -0.222 1.222 27 H -0.225 1.225 28 H -0.225 1.225 29 N -0.083 5.083 30 C -0.123 4.123 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.069 0.931 49 H 0.213 0.787 50 H 0.054 0.946 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.606 -2.338 1.170 13.855 hybrid contribution -0.557 -1.128 0.362 1.309 sum 13.049 -3.466 1.532 13.588 Atomic orbital electron populations 1.23102 0.78185 1.03736 1.02144 1.85983 1.21500 1.26516 1.89028 1.20174 0.93276 0.85741 0.99413 1.20682 0.91441 0.98358 1.03765 1.21707 1.00642 0.91919 1.01399 1.20575 0.89612 0.94044 0.98860 1.20529 0.99405 0.92236 1.00158 1.19939 0.82161 0.81692 0.86876 1.90876 1.27770 1.68501 1.43843 1.47869 1.38370 1.13029 1.36284 1.21556 0.89874 0.95251 0.94360 1.21917 1.01242 0.95876 0.98398 1.21494 0.98320 0.98157 0.97381 1.21983 0.98261 0.96257 1.00553 1.21494 0.95383 0.90339 0.88205 0.92535 1.20726 0.87473 0.96243 0.89914 0.89819 1.22605 1.00004 1.00830 0.99537 1.42340 1.34200 1.34674 1.23147 1.18856 1.04082 1.03591 1.03095 0.92532 1.24339 1.00075 0.98805 0.97515 1.69595 1.37554 1.40368 1.12100 0.86521 0.81459 0.83719 0.75921 1.22190 1.22522 1.22533 1.67586 1.10438 1.25309 1.04990 1.23063 1.00710 0.86846 1.01721 0.92198 0.88230 0.92477 0.84711 0.84817 0.89049 0.88155 0.90469 0.92402 0.91138 0.91679 0.92333 0.92592 0.91328 0.90310 0.93718 0.95151 0.93105 0.78739 0.94612 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.82 101.05 0.99 1.30 16 2 O -0.32 -4.92 10.51 -19.47 -0.20 -5.12 16 3 C 0.06 1.04 6.71 -39.08 -0.26 0.78 16 4 C -0.12 -1.71 10.13 -39.14 -0.40 -2.10 16 5 C -0.14 -1.96 9.70 -39.47 -0.38 -2.35 16 6 C 0.11 1.93 5.76 -82.58 -0.48 1.45 16 7 C -0.08 -1.28 4.46 -29.03 -0.13 -1.41 16 8 C 0.51 9.59 7.05 -10.99 -0.08 9.51 16 9 O -0.44 -10.25 8.52 5.55 0.05 -10.21 16 10 N -0.62 -9.94 2.97 -165.22 -0.49 -10.43 16 11 C 0.11 1.33 6.35 -3.71 -0.02 1.31 16 12 C -0.14 -1.58 6.09 -26.61 -0.16 -1.75 16 13 C -0.12 -1.42 5.88 -26.67 -0.16 -1.58 16 14 C -0.13 -2.07 4.82 -26.60 -0.13 -2.20 16 15 C 0.15 2.52 2.74 -67.60 -0.19 2.33 16 16 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 17 C 0.17 3.48 1.89 -67.93 -0.13 3.35 16 18 H 0.08 1.97 5.85 -52.25 -0.31 1.66 16 19 C -0.17 -3.23 9.07 37.16 0.34 -2.90 16 20 N -0.70 -17.69 3.49 -53.42 -0.19 -17.87 16 21 C -0.16 -4.71 8.11 -15.06 -0.12 -4.83 16 22 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.94 -29.23 13.06 55.49 0.72 -28.50 16 25 Si 0.89 23.70 29.55 -169.99 -5.02 18.68 16 26 H -0.29 -7.51 6.61 56.52 0.37 -7.13 16 27 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 28 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 29 N -0.38 -8.16 9.23 -9.35 -0.09 -8.25 16 30 C 0.04 0.73 10.22 -17.38 -0.18 0.55 16 31 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.13 1.40 7.95 -52.49 -0.42 0.98 16 36 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 37 H 0.10 1.54 7.93 -51.93 -0.41 1.12 16 38 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.04 6.93 -51.93 -0.36 0.68 16 45 H 0.08 1.52 6.21 -51.93 -0.32 1.20 16 46 H 0.04 0.85 6.91 -51.93 -0.36 0.49 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.38 10.18 5.83 -40.82 -0.24 9.95 16 50 H 0.24 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.15 3.15 5.82 -52.48 -0.31 2.84 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -34.82 392.06 -8.90 -43.72 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.01 Total: 11.12 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.57 Total: 0.95 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.04 Total: -65.05 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.16 Total: -15.33 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.82 -8.90 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.250 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds