Wall clock time and date at job start Wed Apr 1 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35914 * 117.00038 * 2 1 4 4 C 1.39143 * 120.47111 * 180.02562 * 3 2 1 5 5 C 1.38535 * 118.37002 * 179.97438 * 4 3 2 6 6 C 1.38250 * 119.22184 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.55480 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47335 * 124.99789 * 7 6 5 9 9 O 1.21290 * 119.99609 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00269 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.62814 * 5.89610 * 10 8 7 12 12 C 1.53191 * 108.77781 * 233.63185 * 11 10 8 13 13 C 1.53049 * 109.31190 * 305.36901 * 12 11 10 14 14 C 1.53068 * 109.65671 * 61.29808 * 13 12 11 15 15 C 1.46923 * 120.63360 * 185.92589 * 10 8 7 16 16 H 1.09001 * 109.58571 * 246.29549 * 15 10 8 17 17 C 1.53005 * 109.58656 * 6.57848 * 15 10 8 18 18 H 1.09003 * 109.46613 * 302.25769 * 17 15 10 19 19 C 1.52996 * 109.47095 * 182.25695 * 17 15 10 20 20 N 1.46497 * 109.47075 * 62.25555 * 17 15 10 21 21 C 1.36938 * 120.00113 * 205.00200 * 20 17 15 22 22 H 1.07998 * 119.99698 * 359.97438 * 21 20 17 23 23 C 1.38815 * 120.00015 * 180.02562 * 21 20 17 24 24 N 1.31620 * 120.00033 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99978 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47184 * 60.00066 * 25 23 21 27 27 H 1.48500 * 109.47404 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47284 * 300.00549 * 25 23 21 29 29 N 1.31844 * 120.88804 * 0.25608 * 6 5 4 30 30 C 1.31839 * 121.77886 * 359.47450 * 29 6 5 31 31 H 1.09004 * 109.46960 * 60.00358 * 1 2 3 32 32 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47225 * 300.00680 * 1 2 3 34 34 H 1.07997 * 120.80987 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.38374 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47138 * 4.99771 * 7 6 5 37 37 H 1.08996 * 109.46783 * 244.99814 * 7 6 5 38 38 H 1.08991 * 109.58848 * 353.42349 * 11 10 8 39 39 H 1.09007 * 109.58384 * 113.84499 * 11 10 8 40 40 H 1.09000 * 109.49830 * 65.31627 * 12 11 10 41 41 H 1.08996 * 109.49775 * 185.41799 * 12 11 10 42 42 H 1.09003 * 109.45397 * 181.38379 * 13 12 11 43 43 H 1.08995 * 109.45678 * 301.35778 * 13 12 11 44 44 H 1.09003 * 109.62156 * 178.82538 * 14 13 12 45 45 H 1.09000 * 109.38966 * 58.72706 * 14 13 12 46 46 H 1.09000 * 109.47188 * 294.95340 * 19 17 15 47 47 H 1.08999 * 109.47527 * 54.95751 * 19 17 15 48 48 H 1.09000 * 109.47186 * 174.95397 * 19 17 15 49 49 H 0.96999 * 119.99847 * 24.99947 * 20 17 15 50 50 H 0.96997 * 119.99827 * 179.97438 * 24 23 21 51 51 H 1.08009 * 119.65691 * 180.27171 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4349 1.2952 -0.0005 5 6 4.0182 2.5518 -0.0011 6 6 3.2080 3.6720 -0.0016 7 6 3.8345 5.0427 -0.0016 8 6 3.3027 5.8381 -1.1658 9 8 2.4941 5.3411 -1.9209 10 7 3.7256 7.1017 -1.3679 11 6 4.7975 7.6735 -0.5416 12 6 4.3046 8.9923 0.0622 13 6 3.8175 9.9119 -1.0600 14 6 2.6495 9.2514 -1.7965 15 6 3.1231 7.9339 -2.4181 16 1 3.8637 8.1399 -3.1909 17 6 1.9304 7.1991 -3.0336 18 1 2.2607 6.2394 -3.4309 19 6 1.3396 8.0434 -4.1645 20 7 0.9103 6.9772 -2.0058 21 6 0.0210 5.9440 -2.1355 22 1 0.0714 5.2930 -2.9958 23 6 -0.9459 5.7341 -1.1619 24 7 -1.0082 6.5284 -0.1142 25 14 -2.1594 4.3251 -1.3392 26 1 -1.4198 3.0386 -1.3935 27 1 -3.0824 4.3173 -0.1759 28 1 -2.9413 4.4996 -2.5896 29 7 1.8945 3.5573 0.0035 30 6 1.3003 2.3804 -0.0011 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 4.0432 0.4029 -0.0005 35 1 5.0933 2.6550 -0.0011 36 1 4.9167 4.9475 -0.0906 37 1 3.5902 5.5538 0.9296 38 1 5.0528 6.9784 0.2582 39 1 5.6755 7.8604 -1.1601 40 1 3.4837 8.7928 0.7510 41 1 5.1215 9.4746 0.5989 42 1 3.4890 10.8605 -0.6353 43 1 4.6318 10.0909 -1.7620 44 1 2.2895 9.9157 -2.5822 45 1 1.8432 9.0517 -1.0908 46 1 0.9285 8.9652 -3.7532 47 1 2.1215 8.2839 -4.8849 48 1 0.5480 7.4824 -4.6613 49 1 0.8649 7.5621 -1.2333 50 1 -1.6841 6.3819 0.5659 51 1 0.2216 2.3264 -0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566534154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:45 Heat of formation + Delta-G solvation = -3.214377 kcal Electronic energy + Delta-G solvation = -33329.899424 eV Core-core repulsion = 29230.913258 eV Total energy + Delta-G solvation = -4098.986166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74083 -41.13832 -39.22452 -37.89412 -36.78383 -34.12875 -33.56662 -33.27707 -32.92691 -31.14741 -29.61137 -29.15142 -28.15644 -25.97449 -25.51301 -24.59067 -24.21575 -23.15666 -21.73729 -21.20755 -19.58968 -19.12951 -18.90352 -18.11105 -17.40972 -17.10803 -16.84841 -16.54245 -16.24816 -15.98036 -15.63453 -15.45000 -15.15086 -15.07605 -14.84293 -14.72705 -14.56038 -14.08934 -14.00191 -13.80931 -13.73539 -13.52313 -13.22283 -13.02542 -12.96196 -12.83344 -12.70001 -12.62131 -12.58976 -12.30752 -12.22856 -12.14134 -11.88606 -11.62994 -11.47470 -11.28244 -11.15514 -10.69611 -10.59426 -10.06172 -9.50020 -9.25513 -9.17500 -8.50415 -7.65691 -4.80890 0.17901 0.45396 1.36559 1.39976 1.45277 2.18366 2.19231 2.44974 2.72261 2.93743 3.47912 3.71193 3.72278 3.77683 3.85368 4.03387 4.05892 4.08900 4.17840 4.18009 4.25366 4.33093 4.38542 4.43308 4.46976 4.52367 4.55990 4.57632 4.66270 4.72624 4.78968 4.80902 4.91696 4.95773 5.01775 5.04274 5.10557 5.15387 5.17156 5.22689 5.32450 5.38714 5.50913 5.59949 5.63331 5.67938 5.75133 6.09862 6.17342 6.56196 6.91797 7.29823 7.64742 7.90119 8.42319 8.67230 9.59612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.005062 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.120902 B = 5530.208308 C = 7338.949286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.318 6.318 3 C 0.059 3.941 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.084 3.916 7 C -0.076 4.076 8 C 0.496 3.504 9 O -0.500 6.500 10 N -0.618 5.618 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.110 4.110 14 C -0.126 4.126 15 C 0.154 3.846 16 H 0.086 0.914 17 C 0.162 3.838 18 H 0.058 0.942 19 C -0.159 4.159 20 N -0.701 5.701 21 C -0.140 4.140 22 H 0.035 0.965 23 C -0.066 4.066 24 N -0.971 5.971 25 Si 0.931 3.069 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.297 1.297 29 N -0.431 5.431 30 C -0.001 4.001 31 H 0.040 0.960 32 H 0.138 0.862 33 H 0.054 0.946 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.023 0.977 49 H 0.367 0.633 50 H 0.234 0.766 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.219 -2.311 1.574 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.230 6.230 3 C 0.012 3.988 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.056 4.056 7 C -0.116 4.116 8 C 0.282 3.718 9 O -0.372 6.372 10 N -0.354 5.354 11 C -0.015 4.015 12 C -0.171 4.171 13 C -0.147 4.147 14 C -0.164 4.164 15 C 0.050 3.950 16 H 0.103 0.897 17 C 0.054 3.946 18 H 0.076 0.924 19 C -0.220 4.220 20 N -0.341 5.341 21 C -0.273 4.273 22 H 0.054 0.946 23 C -0.256 4.256 24 N -0.627 5.627 25 Si 0.766 3.234 26 H -0.215 1.215 27 H -0.229 1.229 28 H -0.226 1.226 29 N -0.140 5.140 30 C -0.159 4.159 31 H 0.058 0.942 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.190 0.810 35 H 0.204 0.796 36 H 0.163 0.837 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.042 0.958 49 H 0.201 0.799 50 H 0.043 0.957 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.246 -2.236 1.084 18.415 hybrid contribution -1.872 -1.141 0.308 2.214 sum 16.375 -3.377 1.392 16.777 Atomic orbital electron populations 1.23279 0.77225 1.05827 1.01101 1.85977 1.22506 1.25718 1.88804 1.20305 0.94412 0.85115 0.99014 1.21204 0.90442 1.00088 1.02038 1.22194 1.02750 0.90387 0.98068 1.21100 0.88847 0.96280 0.99326 1.20614 1.02116 0.90639 0.98259 1.20631 0.81532 0.82517 0.87082 1.90858 1.30391 1.70006 1.45956 1.48000 1.38869 1.12242 1.36312 1.21928 0.89195 0.95431 0.94923 1.21912 1.01334 0.96092 0.97810 1.21477 0.97412 0.98089 0.97763 1.21890 0.98511 0.96099 0.99936 1.21369 0.94199 0.90153 0.89266 0.89658 1.20795 0.88212 0.96090 0.89510 0.92385 1.22441 1.00241 0.99840 0.99445 1.42353 1.34610 1.33316 1.23788 1.18798 1.03769 1.03181 1.01566 0.94649 1.24748 1.02073 1.00936 0.97845 1.69731 1.38243 1.41913 1.12803 0.85801 0.79878 0.82361 0.75395 1.21496 1.22902 1.22562 1.67420 1.13165 1.26529 1.06874 1.22758 0.99972 0.88183 1.05026 0.94156 0.84397 0.92767 0.80951 0.79648 0.83737 0.88428 0.88477 0.89144 0.94314 0.88118 0.91675 0.89888 0.90917 0.94840 0.93812 0.91407 0.95758 0.79897 0.95712 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.82 113.37 1.11 1.66 16 2 O -0.32 -9.75 10.51 -92.58 -0.97 -10.72 16 3 C 0.06 2.02 6.71 22.60 0.15 2.17 16 4 C -0.11 -2.99 10.13 22.56 0.23 -2.76 16 5 C -0.11 -2.92 9.70 22.34 0.22 -2.70 16 6 C 0.08 2.94 5.76 42.56 0.25 3.18 16 7 C -0.08 -2.21 4.46 29.10 0.13 -2.08 16 8 C 0.50 18.45 7.05 87.66 0.62 19.07 16 9 O -0.50 -23.93 8.52 -3.06 -0.03 -23.95 16 10 N -0.62 -18.71 2.97 -795.04 -2.36 -21.07 16 11 C 0.11 2.07 6.35 86.36 0.55 2.62 16 12 C -0.13 -2.66 6.09 30.67 0.19 -2.48 16 13 C -0.11 -2.34 5.88 30.63 0.18 -2.16 16 14 C -0.13 -3.81 4.82 30.68 0.15 -3.67 16 15 C 0.15 4.96 2.74 44.98 0.12 5.08 16 16 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 17 C 0.16 6.92 1.89 44.99 0.08 7.00 16 18 H 0.06 2.83 5.85 -7.49 -0.04 2.78 16 19 C -0.16 -6.11 9.07 71.98 0.65 -5.46 16 20 N -0.70 -36.99 3.49 -322.94 -1.13 -38.12 16 21 C -0.14 -8.47 8.11 84.03 0.68 -7.79 16 22 H 0.04 2.27 7.83 -2.91 -0.02 2.24 16 23 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 24 N -0.97 -63.51 13.06 21.65 0.28 -63.22 16 25 Si 0.93 51.64 29.55 68.60 2.03 53.67 16 26 H -0.29 -15.43 6.61 99.48 0.66 -14.78 16 27 H -0.30 -16.78 7.11 99.48 0.71 -16.07 16 28 H -0.30 -16.28 7.11 99.48 0.71 -15.58 16 29 N -0.43 -19.59 9.23 -183.49 -1.69 -21.29 16 30 C 0.00 -0.05 10.22 84.80 0.87 0.82 16 31 H 0.04 1.22 7.68 -2.39 -0.02 1.20 16 32 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.05 1.46 7.68 -2.39 -0.02 1.44 16 34 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.19 2.71 7.95 -2.91 -0.02 2.68 16 36 H 0.14 2.51 7.42 -2.39 -0.02 2.49 16 37 H 0.10 2.88 7.93 -2.39 -0.02 2.86 16 38 H 0.10 1.51 5.93 -2.39 -0.01 1.49 16 39 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 2.10 6.93 -2.39 -0.02 2.08 16 45 H 0.03 1.32 6.21 -2.39 -0.01 1.31 16 46 H 0.04 1.66 6.91 -2.39 -0.02 1.64 16 47 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.37 20.89 5.83 -92.71 -0.54 20.35 16 50 H 0.23 15.26 8.31 -92.71 -0.77 14.49 16 51 H 0.12 5.67 5.82 -2.91 -0.02 5.65 16 Total: -1.00 -85.30 392.06 3.09 -82.21 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.32 Total: 33.66 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.64 Total: 8.84 kcal Atomic # 7 Polarization: -138.80 SS G_CDS: -4.90 Total: -143.70 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.00 Total: -34.67 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.03 Total: 53.67 kcal Total: -85.30 3.09 -82.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566534154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.997 kcal (2) G-P(sol) polarization free energy of solvation -85.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds