Wall clock time and date at job start Wed Apr 1 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46838 * 2 1 4 4 N 1.46499 * 109.47494 * 239.99905 * 2 1 3 5 5 C 1.34772 * 120.00033 * 84.99428 * 4 2 1 6 6 O 1.21283 * 119.99977 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00087 * 179.72558 * 5 4 2 8 8 C 1.52998 * 109.47438 * 180.27874 * 7 5 4 9 9 C 1.50702 * 109.47082 * 180.02562 * 8 7 5 10 10 C 1.38833 * 120.35450 * 90.00242 * 9 8 7 11 11 C 1.38372 * 118.48263 * 179.97438 * 10 9 8 12 12 C 1.38923 * 119.11435 * 359.97438 * 11 10 9 13 13 O 1.35678 * 119.68366 * 180.02562 * 12 11 10 14 14 N 1.32243 * 120.63012 * 0.02562 * 12 11 10 15 15 C 1.31973 * 121.64773 * 359.68553 * 14 12 11 16 16 C 1.52996 * 109.47224 * 119.99403 * 2 1 3 17 17 H 1.09006 * 109.49520 * 60.00100 * 16 2 1 18 18 C 1.53045 * 109.50039 * 299.93841 * 16 2 1 19 19 C 1.53043 * 109.53773 * 178.67861 * 18 16 2 20 20 C 1.53195 * 109.30988 * 61.36945 * 19 18 16 21 21 N 1.46928 * 108.77386 * 305.36019 * 20 19 18 22 22 C 1.36940 * 120.63108 * 233.60898 * 21 20 19 23 23 H 1.08001 * 119.99644 * 151.83943 * 22 21 20 24 24 C 1.38809 * 119.99731 * 331.85123 * 22 21 20 25 25 N 1.31621 * 120.00197 * 343.05949 * 24 22 21 26 26 Si 1.86805 * 119.99861 * 163.07168 * 24 22 21 27 27 H 1.48498 * 109.47317 * 89.99324 * 26 24 22 28 28 H 1.48499 * 109.46990 * 209.99423 * 26 24 22 29 29 H 1.48505 * 109.46846 * 329.99182 * 26 24 22 30 30 C 1.46937 * 118.76494 * 53.58943 * 21 20 19 31 31 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47164 * 300.00386 * 1 2 3 33 33 H 1.08996 * 109.46899 * 60.00223 * 1 2 3 34 34 H 0.96998 * 119.99542 * 264.99931 * 4 2 1 35 35 H 1.09003 * 109.47265 * 300.27871 * 7 5 4 36 36 H 1.09000 * 109.46773 * 60.27796 * 7 5 4 37 37 H 1.09003 * 109.46890 * 300.00227 * 8 7 5 38 38 H 1.09000 * 109.47202 * 60.00185 * 8 7 5 39 39 H 1.07999 * 120.75408 * 359.95279 * 10 9 8 40 40 H 1.08008 * 120.44229 * 179.97438 * 11 10 9 41 41 H 0.96700 * 113.99987 * 89.99902 * 13 12 11 42 42 H 1.07997 * 119.58517 * 180.30706 * 15 14 12 43 43 H 1.08994 * 109.45946 * 298.70360 * 18 16 2 44 44 H 1.09001 * 109.45812 * 58.67747 * 18 16 2 45 45 H 1.08998 * 109.49662 * 181.31614 * 19 18 16 46 46 H 1.08999 * 109.50102 * 301.38042 * 19 18 16 47 47 H 1.08993 * 109.58651 * 65.14828 * 20 19 18 48 48 H 1.09004 * 109.58505 * 185.43072 * 20 19 18 49 49 H 0.96998 * 119.99878 * 180.02562 * 25 24 22 50 50 H 1.08994 * 109.61198 * 186.63755 * 30 21 20 51 51 H 1.09006 * 109.55709 * 66.21399 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8589 1.1585 -2.4115 7 6 2.6554 -0.7272 -3.5860 8 6 2.7121 0.2572 -4.7558 9 6 3.2198 -0.4519 -5.9849 10 6 2.3322 -1.0709 -6.8547 11 6 2.8405 -1.7103 -7.9716 12 6 4.2134 -1.7108 -8.1839 13 8 4.7242 -2.3338 -9.2756 14 7 5.0272 -1.1099 -7.3321 15 6 4.5718 -0.4872 -6.2613 16 6 2.0400 -0.7211 1.2493 17 1 1.6769 -1.7489 1.2498 18 6 1.5315 0.0009 2.4993 19 6 2.0139 -0.7387 3.7493 20 6 3.5455 -0.7370 3.7795 21 7 4.0440 -1.2982 2.5164 22 6 4.9317 -2.3409 2.5184 23 1 4.9542 -3.0324 1.6891 24 6 5.8023 -2.5091 3.5863 25 7 6.0183 -1.5155 4.4221 26 14 6.6677 -4.1455 3.8371 27 1 7.9602 -4.1392 3.1059 28 1 6.9193 -4.3555 5.2854 29 1 5.8113 -5.2427 3.3192 30 6 3.5719 -0.7200 1.2507 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6317 -1.1525 35 1 3.6538 -1.1193 -3.3924 36 1 1.9842 -1.5492 -3.8349 37 1 1.7136 0.6493 -4.9494 38 1 3.3833 1.0791 -4.5069 39 1 1.2694 -1.0541 -6.6636 40 1 2.1787 -2.2025 -8.6690 41 1 4.8012 -1.7644 -10.0534 42 1 5.2660 -0.0032 -5.5905 43 1 1.9147 1.0212 2.5104 44 1 0.4418 0.0223 2.4882 45 1 1.6320 -0.2374 4.6386 46 1 1.6510 -1.7663 3.7268 47 1 3.9076 0.2847 3.8935 48 1 3.8952 -1.3440 4.6147 49 1 6.6270 -1.6330 5.1682 50 1 3.9386 -1.3177 0.4163 51 1 3.9367 0.3030 1.1584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566966750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:57 Heat of formation + Delta-G solvation = -40.590502 kcal Electronic energy + Delta-G solvation = -30128.213461 eV Core-core repulsion = 26027.606545 eV Total energy + Delta-G solvation = -4100.606916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.86329 -39.90099 -38.05224 -37.56306 -35.32059 -34.32725 -33.04672 -32.46646 -31.15990 -30.49034 -29.47458 -28.45199 -25.46792 -25.04524 -24.08914 -23.37091 -22.06100 -21.87276 -20.48737 -20.29153 -19.18668 -19.06964 -17.30797 -17.21935 -16.72689 -16.35443 -15.92348 -15.49724 -15.35761 -14.85531 -14.62597 -14.32876 -14.01299 -13.74554 -13.62907 -13.46929 -13.43592 -13.31821 -13.18878 -12.59189 -12.47535 -12.41019 -12.26463 -12.18457 -11.91764 -11.81523 -11.52708 -11.30903 -11.12134 -10.97796 -10.65966 -10.44419 -10.25549 -10.22680 -10.16407 -9.94489 -9.85472 -9.73960 -9.54595 -9.42969 -9.08966 -8.90411 -8.47596 -6.67448 -5.80205 -3.23060 0.59944 0.85161 2.69112 3.09184 3.23984 3.35710 3.43004 3.44512 3.48708 4.27279 4.39506 4.46576 4.54812 4.59185 4.71339 4.87079 4.91585 5.00539 5.13959 5.24338 5.28031 5.35808 5.37774 5.41371 5.54174 5.55945 5.58405 5.60335 5.75521 5.79215 5.83854 5.95368 6.02076 6.06077 6.10960 6.16699 6.29187 6.33922 6.42015 6.56883 6.60464 6.70287 6.80022 6.86195 6.97200 7.09935 7.38878 7.57010 7.59974 7.66590 7.77110 8.29328 8.43513 9.19800 9.83462 10.40417 11.28093 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.002278 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.608981 B =12290.460069 C =14463.087790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.085 0.915 4 N -0.719 5.719 5 C 0.514 3.486 6 O -0.547 6.547 7 C -0.138 4.138 8 C -0.059 4.059 9 C -0.141 4.141 10 C -0.057 4.057 11 C -0.184 4.184 12 C 0.301 3.699 13 O -0.484 6.484 14 N -0.501 5.501 15 C 0.129 3.871 16 C -0.111 4.111 17 H 0.070 0.930 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.156 3.844 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.401 0.599 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.399 0.601 42 H 0.163 0.837 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.017 0.983 48 H 0.086 0.914 49 H 0.254 0.746 50 H 0.050 0.950 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 2.039 -20.774 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.103 0.897 4 N -0.370 5.370 5 C 0.300 3.700 6 O -0.425 6.425 7 C -0.178 4.178 8 C -0.097 4.097 9 C -0.143 4.143 10 C -0.083 4.083 11 C -0.205 4.205 12 C 0.123 3.877 13 O -0.291 6.291 14 N -0.219 5.219 15 C -0.028 4.028 16 C -0.132 4.132 17 H 0.089 0.911 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.044 3.956 21 N -0.314 5.314 22 C -0.383 4.383 23 H 0.081 0.919 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.029 3.971 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.236 0.764 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.257 0.743 42 H 0.180 0.820 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.104 0.896 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -10.661 2.333 -20.510 23.233 hybrid contribution -0.222 -1.036 0.031 1.060 sum -10.882 1.298 -20.479 23.227 Atomic orbital electron populations 1.22194 0.95820 1.01773 1.02099 1.21042 0.93373 0.97543 0.83804 0.89663 1.46135 1.66837 1.14267 1.09721 1.20537 0.77524 0.87320 0.84616 1.90691 1.50598 1.15986 1.85176 1.21680 1.03767 0.99501 0.92888 1.20242 1.03203 0.96878 0.89376 1.20982 0.94807 1.00366 0.98126 1.21467 1.00580 0.93873 0.92387 1.22111 0.95227 1.02622 1.00521 1.19220 0.87548 0.91890 0.89074 1.84793 1.85997 1.38104 1.20198 1.67197 1.40999 1.08838 1.04852 1.22542 0.93443 0.94130 0.92671 1.21970 0.99552 0.99150 0.92505 0.91110 1.21443 0.98708 0.99040 0.94722 1.22178 1.00879 0.99323 0.95745 1.20781 0.87432 0.97213 0.90214 1.44037 1.49818 1.38029 0.99488 1.19128 1.11115 1.02052 1.05986 0.91853 1.25044 0.97238 0.97450 0.99876 1.70036 1.37697 1.29362 1.17473 0.86329 0.79566 0.83913 0.77146 1.21385 1.21561 1.20516 1.20854 0.89859 0.96325 0.90022 0.92762 0.91359 0.92735 0.76446 0.88430 0.88915 0.89828 0.89462 0.84214 0.84222 0.74335 0.82012 0.92609 0.93164 0.93260 0.92802 0.96524 0.89630 0.93629 0.93115 0.96606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.14 37.16 0.34 -1.58 16 2 C 0.15 2.01 2.16 -67.93 -0.15 1.86 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 N -0.72 -8.63 4.48 -53.81 -0.24 -8.87 16 5 C 0.51 6.21 7.79 -10.99 -0.09 6.13 16 6 O -0.55 -8.49 15.64 5.55 0.09 -8.40 16 7 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 8 C -0.06 -0.48 4.66 -27.88 -0.13 -0.61 16 9 C -0.14 -1.13 5.15 -104.47 -0.54 -1.67 16 10 C -0.06 -0.41 9.85 -39.31 -0.39 -0.79 16 11 C -0.18 -1.38 10.04 -39.28 -0.39 -1.77 16 12 C 0.30 2.90 7.74 -17.12 -0.13 2.77 16 13 O -0.48 -4.06 13.56 -18.74 -0.25 -4.32 16 14 N -0.50 -5.58 10.39 -13.33 -0.14 -5.72 16 15 C 0.13 1.20 10.85 -17.56 -0.19 1.01 16 16 C -0.11 -1.76 1.97 -90.50 -0.18 -1.94 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.10 -1.61 4.85 -26.69 -0.13 -1.74 16 19 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 20 C 0.17 3.97 5.30 -3.71 -0.02 3.96 16 21 N -0.59 -14.41 2.99 -172.31 -0.52 -14.93 16 22 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 23 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 24 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 25 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 26 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 C 0.16 3.12 5.56 -3.71 -0.02 3.10 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 4.20 8.42 -40.82 -0.34 3.86 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 38 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.40 1.27 9.06 45.56 0.41 1.68 16 42 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 49 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 50 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 51 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 409.71 15.07 6.17 6.17 Total: -1.00 -34.08 409.71 -9.43 -43.51 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.57 Total: 3.88 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.56 Total: -2.35 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.27 Total: -54.88 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.17 Total: -12.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.08 -9.43 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566966750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.918 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds