Wall clock time and date at job start Wed Apr 1 2020 04:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47094 * 2 1 4 4 N 1.46497 * 109.47292 * 120.00198 * 2 1 3 5 5 C 1.36929 * 120.00312 * 274.99968 * 4 2 1 6 6 H 1.08010 * 119.99935 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00611 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00386 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99845 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47005 * 89.99834 * 9 7 5 11 11 H 1.48498 * 109.47596 * 210.00355 * 9 7 5 12 12 H 1.48503 * 109.46653 * 329.99942 * 9 7 5 13 13 C 1.53003 * 109.47140 * 240.00238 * 2 1 3 14 14 H 1.08995 * 109.49858 * 185.06230 * 13 2 1 15 15 C 1.53044 * 109.49712 * 64.99821 * 13 2 1 16 16 C 1.53040 * 109.53958 * 178.68712 * 15 13 2 17 17 C 1.53187 * 109.31354 * 61.36184 * 16 15 13 18 18 N 1.46924 * 108.77960 * 305.36838 * 17 16 15 19 19 C 1.34776 * 120.63193 * 233.58436 * 18 17 16 20 20 O 1.21498 * 119.99680 * 185.63642 * 19 18 17 21 21 C 1.48324 * 120.00043 * 5.63800 * 19 18 17 22 22 N 1.31497 * 127.15534 * 5.87852 * 21 19 18 23 23 O 1.21430 * 111.52665 * 179.97438 * 22 21 19 24 24 C 1.33183 * 111.57223 * 359.96560 * 23 22 21 25 25 C 1.35379 * 106.63448 * 0.07124 * 24 23 22 26 26 C 1.50066 * 124.93857 * 179.88164 * 25 24 23 27 27 C 1.53542 * 108.23242 * 343.90701 * 26 25 24 28 28 C 1.53106 * 109.51714 * 49.19029 * 27 26 25 29 29 C 1.50594 * 129.60613 * 180.20030 * 24 23 22 30 30 C 1.46924 * 118.73756 * 53.85722 * 18 17 16 31 31 H 1.09004 * 109.46927 * 300.00074 * 1 2 3 32 32 H 1.09001 * 109.47613 * 59.99464 * 1 2 3 33 33 H 1.08995 * 109.47447 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99785 * 94.99807 * 4 2 1 35 35 H 0.97003 * 120.00049 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.45827 * 58.66289 * 15 13 2 37 37 H 1.09002 * 109.45881 * 298.70647 * 15 13 2 38 38 H 1.09005 * 109.49607 * 301.41693 * 16 15 13 39 39 H 1.08992 * 109.52667 * 181.33689 * 16 15 13 40 40 H 1.09001 * 109.58803 * 185.58026 * 17 16 15 41 41 H 1.09005 * 109.70554 * 65.22776 * 17 16 15 42 42 H 1.09000 * 109.71276 * 224.21543 * 26 25 24 43 43 H 1.09004 * 109.70573 * 103.58618 * 26 25 24 44 44 H 1.09004 * 109.46274 * 289.17937 * 27 26 25 45 45 H 1.09003 * 109.45784 * 169.20251 * 27 26 25 46 46 H 1.08997 * 109.43279 * 170.07009 * 28 27 26 47 47 H 1.09010 * 109.38000 * 50.20217 * 28 27 26 48 48 H 1.09002 * 109.69514 * 282.84847 * 29 24 23 49 49 H 1.08998 * 109.69779 * 43.44046 * 29 24 23 50 50 H 1.09005 * 109.58723 * 65.92642 * 30 18 17 51 51 H 1.08998 * 109.58855 * 186.35278 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6114 -0.6621 3.5092 8 7 2.7366 -0.0057 4.6430 9 14 3.0543 -2.4749 3.4256 10 1 4.4869 -2.6182 3.0617 11 1 2.8143 -3.1047 4.7488 12 1 2.2138 -3.1430 2.3997 13 6 2.0400 -0.7212 -1.2493 14 1 3.1261 -0.8007 -1.2056 15 6 1.6354 0.0687 -2.4961 16 6 2.1731 -0.6345 -3.7445 17 6 1.5611 -2.0355 -3.8400 18 7 1.8218 -2.7522 -2.5842 19 6 2.4121 -3.9638 -2.5948 20 8 2.5298 -4.5912 -1.5610 21 6 2.9181 -4.5311 -3.8684 22 7 2.9624 -3.9367 -5.0405 23 8 3.4326 -4.6641 -5.8916 24 6 3.7671 -5.8518 -5.3902 25 6 3.4518 -5.8196 -4.0741 26 6 3.6574 -6.9537 -3.1131 27 6 3.8857 -8.2364 -3.9255 28 6 4.9470 -7.9800 -4.9989 29 6 4.3798 -7.0449 -6.0750 30 6 1.4212 -2.1257 -1.3170 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1525 35 1 3.0600 -0.4630 5.4350 36 1 2.0504 1.0751 -2.4389 37 1 0.5484 0.1271 -2.5521 38 1 3.2581 -0.7153 -3.6775 39 1 1.9052 -0.0592 -4.6306 40 1 2.0146 -2.5766 -4.6704 41 1 0.4856 -1.9567 -3.9992 42 1 2.7738 -7.0685 -2.4853 43 1 4.5288 -6.7536 -2.4894 44 1 2.9521 -8.5355 -4.4020 45 1 4.2254 -9.0312 -3.2614 46 1 5.2361 -8.9261 -5.4564 47 1 5.8208 -7.5170 -4.5403 48 1 3.6178 -7.5686 -6.6522 49 1 5.1817 -6.7171 -6.7365 50 1 0.3346 -2.0518 -1.2734 51 1 1.7825 -2.7263 -0.4822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:06 Heat of formation + Delta-G solvation = 39.066908 kcal Electronic energy + Delta-G solvation = -31852.536301 eV Core-core repulsion = 27755.383589 eV Total energy + Delta-G solvation = -4097.152712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.37384 -40.25621 -38.25883 -37.80567 -35.66380 -34.22464 -32.93416 -31.94076 -31.35423 -30.74586 -30.09953 -28.19284 -26.36223 -24.84090 -24.61508 -23.44061 -23.23175 -22.88560 -21.09194 -20.33445 -19.58835 -18.77742 -18.14384 -17.71792 -17.37223 -16.82850 -15.96634 -15.44479 -15.16000 -14.79439 -14.73774 -14.55260 -14.34506 -14.21460 -14.08541 -13.63734 -13.52673 -13.43581 -13.12207 -13.05818 -12.75744 -12.68184 -12.57189 -12.13111 -11.93492 -11.61499 -11.44354 -11.37266 -11.22540 -11.09102 -10.93011 -10.76217 -10.65048 -10.52236 -10.47082 -10.37973 -10.19616 -10.04321 -9.83356 -9.50977 -9.40985 -8.89372 -8.59673 -7.22858 -5.72376 -3.07618 0.83492 1.41295 2.48351 2.78171 3.03700 3.45303 3.51111 3.53580 3.67286 4.08705 4.27244 4.36978 4.54102 4.58917 4.65495 4.69863 4.81457 4.92168 4.94448 4.99833 5.02358 5.07000 5.12161 5.29430 5.30030 5.36828 5.46456 5.50955 5.56606 5.58049 5.63122 5.68261 5.73089 5.78617 5.81071 5.85358 5.90769 5.98131 6.01617 6.05186 6.18234 6.25685 6.29051 6.45809 6.49509 6.63327 6.80558 7.05204 7.25675 7.71388 8.01236 8.03720 8.46743 9.25424 9.98576 10.17935 11.45912 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.003168 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.542234 B = 8837.295870 C =10633.170374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.186 3.814 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.274 1.274 13 C -0.107 4.107 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.129 4.129 17 C 0.077 3.923 18 N -0.593 5.593 19 C 0.591 3.409 20 O -0.517 6.517 21 C -0.003 4.003 22 N -0.335 5.335 23 O 0.116 5.884 24 C -0.034 4.034 25 C -0.152 4.152 26 C -0.047 4.047 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.035 4.035 30 C 0.114 3.886 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -14.182 -27.793 31.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.077 0.923 4 N -0.393 5.393 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.709 3.291 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.200 1.200 13 C -0.127 4.127 14 H 0.094 0.906 15 C -0.152 4.152 16 C -0.167 4.167 17 C -0.046 4.046 18 N -0.326 5.326 19 C 0.376 3.624 20 O -0.391 6.391 21 C -0.161 4.161 22 N -0.042 5.042 23 O 0.048 5.952 24 C -0.099 4.099 25 C -0.157 4.157 26 C -0.084 4.084 27 C -0.161 4.161 28 C -0.157 4.157 29 C -0.073 4.073 30 C -0.007 4.007 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.096 0.904 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.715 -13.119 -27.416 30.401 hybrid contribution 0.379 -1.635 0.524 1.759 sum 1.094 -14.754 -26.891 30.692 Atomic orbital electron populations 1.22549 0.98996 1.00906 1.00576 1.20149 0.92021 0.95595 0.84622 0.92258 1.42866 1.79792 1.09447 1.07201 1.19058 1.36836 0.95480 0.85712 0.89183 1.24641 1.01435 0.97388 0.95565 1.69700 1.52785 1.35574 1.00255 0.86629 0.78708 0.86854 0.76883 1.21118 1.21721 1.20038 1.21925 1.00997 0.94004 0.95812 0.90639 1.21622 1.01224 0.99031 0.93360 1.21855 1.00974 0.95162 0.98727 1.22548 1.00993 0.94119 0.86923 1.48034 1.58369 1.17218 1.08972 1.17001 0.78319 0.81376 0.85664 1.90823 1.57045 1.59384 1.31846 1.23090 1.04890 0.94184 0.93921 1.74238 1.15100 1.16018 0.98849 1.84685 1.56878 1.19717 1.33897 1.24111 1.02766 0.89368 0.93649 1.20674 1.03703 0.96017 0.95290 1.20026 1.03786 0.89370 0.95256 1.21722 0.99355 0.97357 0.97665 1.21666 0.98936 0.99235 0.95882 1.20281 1.00296 0.88820 0.97878 1.22054 0.99891 0.93939 0.84790 0.92303 0.93922 0.93377 0.80570 0.93119 0.91288 0.91343 0.91706 0.90765 0.86103 0.91528 0.89257 0.89614 0.91364 0.90477 0.89967 0.90917 0.88678 0.88806 0.90364 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.76 37.16 0.33 -2.62 16 2 C 0.19 3.56 2.67 -67.93 -0.18 3.38 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.75 -18.14 4.86 -53.43 -0.26 -18.40 16 5 C -0.24 -6.91 10.41 -15.06 -0.16 -7.07 16 6 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.94 -30.02 13.97 55.49 0.78 -29.24 16 9 Si 0.88 23.33 27.73 -169.99 -4.71 18.62 16 10 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 11 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 12 H -0.27 -7.05 6.52 56.52 0.37 -6.68 16 13 C -0.11 -1.74 2.28 -90.27 -0.21 -1.94 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.11 -1.44 4.89 -26.69 -0.13 -1.57 16 16 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 17 C 0.08 0.93 6.33 -3.71 -0.02 0.91 16 18 N -0.59 -8.97 2.97 -173.44 -0.51 -9.49 16 19 C 0.59 9.72 7.72 -12.11 -0.09 9.63 16 20 O -0.52 -10.01 15.63 5.37 0.08 -9.92 16 21 C 0.00 -0.05 6.91 -82.82 -0.57 -0.62 16 22 N -0.33 -4.12 8.61 33.29 0.29 -3.84 16 23 O 0.12 1.20 11.18 19.21 0.21 1.42 16 24 C -0.03 -0.31 7.38 -35.38 -0.26 -0.57 16 25 C -0.15 -1.74 6.04 -104.91 -0.63 -2.37 16 26 C -0.05 -0.47 5.64 -27.91 -0.16 -0.63 16 27 C -0.12 -0.78 5.92 -26.39 -0.16 -0.94 16 28 C -0.12 -0.57 5.88 -26.45 -0.16 -0.72 16 29 C -0.03 -0.17 6.31 -27.71 -0.17 -0.34 16 30 C 0.11 1.89 5.17 -3.49 -0.02 1.87 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.60 6.60 -51.93 -0.34 0.26 16 33 H 0.05 0.82 6.23 -51.93 -0.32 0.50 16 34 H 0.36 8.86 4.35 -40.82 -0.18 8.69 16 35 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.81 6.63 -51.93 -0.34 0.46 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.12 1.46 3.79 -70.81 -0.27 1.19 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.07 0.39 8.12 -51.92 -0.42 -0.03 16 48 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 1.22 6.08 -51.93 -0.32 0.90 16 51 H 0.09 1.85 5.87 -51.93 -0.30 1.55 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -34.42 387.32 -9.14 -43.55 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.99 Total: 6.62 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.85 Total: -5.16 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.29 Total: -60.97 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.30 Total: -8.51 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.71 Total: 18.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.42 -9.14 -43.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.621 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds