Wall clock time and date at job start Wed Apr 1 2020 04:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46946 * 2 1 4 4 N 1.46504 * 109.47331 * 120.00000 * 2 1 3 5 5 C 1.36936 * 120.00009 * 274.99981 * 4 2 1 6 6 H 1.07998 * 119.99674 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99853 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99886 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00033 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47103 * 90.00044 * 9 7 5 11 11 H 1.48501 * 109.47282 * 209.99798 * 9 7 5 12 12 H 1.48499 * 109.47482 * 330.00049 * 9 7 5 13 13 C 1.53002 * 109.47102 * 240.00144 * 2 1 3 14 14 H 1.08998 * 109.52120 * 300.07762 * 13 2 1 15 15 C 1.53036 * 109.49673 * 60.16080 * 13 2 1 16 16 C 1.53048 * 109.53896 * 181.31784 * 15 13 2 17 17 C 1.53621 * 109.24092 * 298.51112 * 16 15 13 18 18 N 1.46934 * 108.54292 * 54.85374 * 17 16 15 19 19 C 1.34776 * 120.62733 * 126.37195 * 18 17 16 20 20 O 1.21498 * 119.99406 * 186.47787 * 19 18 17 21 21 C 1.48329 * 120.00337 * 6.47209 * 19 18 17 22 22 N 1.31495 * 127.15181 * 6.19504 * 21 19 18 23 23 O 1.21436 * 111.52312 * 180.02562 * 22 21 19 24 24 C 1.33182 * 111.57020 * 359.88952 * 23 22 21 25 25 C 1.35379 * 106.63509 * 0.15148 * 24 23 22 26 26 C 1.50061 * 124.93406 * 179.87358 * 25 24 23 27 27 C 1.53538 * 108.23453 * 343.82732 * 26 25 24 28 28 C 1.53107 * 109.51672 * 49.21267 * 27 26 25 29 29 C 1.50595 * 129.60511 * 180.15824 * 24 23 22 30 30 C 1.46923 * 118.74005 * 306.09283 * 18 17 16 31 31 H 1.08998 * 109.46946 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46834 * 299.99389 * 1 2 3 33 33 H 1.08996 * 109.47168 * 60.00255 * 1 2 3 34 34 H 0.97006 * 119.99517 * 94.99786 * 4 2 1 35 35 H 0.97003 * 119.99863 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46072 * 301.33325 * 15 13 2 37 37 H 1.08993 * 109.46378 * 61.30954 * 15 13 2 38 38 H 1.09001 * 109.49487 * 58.58371 * 16 15 13 39 39 H 1.08993 * 109.49849 * 178.68313 * 16 15 13 40 40 H 1.09000 * 109.73855 * 295.11850 * 17 16 15 41 41 H 1.08994 * 109.66772 * 174.54504 * 17 16 15 42 42 H 1.08994 * 109.71173 * 224.13959 * 26 25 24 43 43 H 1.08999 * 109.71027 * 103.51201 * 26 25 24 44 44 H 1.09007 * 109.46533 * 169.22342 * 27 26 25 45 45 H 1.09002 * 109.46740 * 289.19709 * 27 26 25 46 46 H 1.09003 * 109.42599 * 50.24290 * 28 27 26 47 47 H 1.08993 * 109.43301 * 170.08712 * 28 27 26 48 48 H 1.09001 * 109.69872 * 43.51917 * 29 24 23 49 49 H 1.09000 * 109.72825 * 282.95289 * 29 24 23 50 50 H 1.08993 * 109.58692 * 173.64669 * 30 18 17 51 51 H 1.09000 * 109.58843 * 294.07744 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6115 -0.6620 3.5092 8 7 2.7377 -0.0053 4.6429 9 14 3.0544 -2.4748 3.4256 10 1 4.4870 -2.6180 3.0618 11 1 2.8145 -3.1045 4.7489 12 1 2.2140 -3.1430 2.3998 13 6 2.0400 -0.7212 -1.2493 14 1 1.6760 -1.7486 -1.2508 15 6 1.5335 0.0021 -2.4992 16 6 2.0159 -0.7374 -3.7493 17 6 3.5518 -0.7343 -3.7784 18 7 4.0442 -1.3005 -2.5151 19 6 4.9168 -2.3276 -2.5169 20 8 5.2260 -2.8638 -1.4714 21 6 5.4996 -2.8034 -3.7952 22 7 5.3547 -2.2615 -4.9845 23 8 5.9564 -2.8856 -5.8348 24 6 6.5896 -3.9357 -5.3152 25 6 6.3239 -3.9307 -3.9877 26 6 6.8356 -4.9427 -3.0051 27 6 7.3397 -6.1623 -3.7899 28 6 8.2660 -5.6980 -4.9171 29 6 7.4488 -4.9705 -5.9927 30 6 3.5720 -0.7216 -1.2499 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 3.0604 -0.4628 5.4350 36 1 0.4438 0.0253 -2.4888 37 1 1.9183 1.0218 -2.5097 38 1 1.6520 -1.7647 -3.7273 39 1 1.6353 -0.2351 -4.6386 40 1 3.9158 0.2873 -3.8874 41 1 3.9042 -1.3409 -4.6125 42 1 6.0307 -5.2439 -2.3347 43 1 7.6543 -4.5132 -2.4277 44 1 7.8872 -6.8248 -3.1195 45 1 6.4903 -6.6971 -4.2149 46 1 9.0176 -5.0201 -4.5126 47 1 8.7598 -6.5628 -5.3601 48 1 8.1217 -4.4841 -6.6990 49 1 6.8170 -5.6852 -6.5201 50 1 3.9376 -1.3198 -0.4154 51 1 3.9376 0.3010 -1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:09 Heat of formation + Delta-G solvation = 35.436722 kcal Electronic energy + Delta-G solvation = -31787.640444 eV Core-core repulsion = 27690.330315 eV Total energy + Delta-G solvation = -4097.310128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.34403 -40.16713 -38.19934 -37.73976 -35.63614 -34.20105 -32.93987 -31.81346 -31.32477 -30.74094 -30.07924 -28.61555 -26.11745 -24.90100 -24.42847 -23.21098 -23.10616 -22.72372 -21.03784 -20.19852 -19.78917 -19.13210 -18.12070 -17.63305 -17.32432 -16.79560 -15.84054 -15.41183 -15.25046 -14.87817 -14.67328 -14.36540 -14.18958 -14.17152 -14.06250 -13.59422 -13.48359 -13.39154 -13.02988 -12.94213 -12.88047 -12.71848 -12.40689 -12.29466 -11.76211 -11.52834 -11.41936 -11.34722 -11.15529 -11.06085 -10.99017 -10.88143 -10.75458 -10.60169 -10.39592 -10.34218 -10.14488 -10.04347 -9.78590 -9.51176 -9.37044 -8.88851 -8.58023 -7.21571 -5.71635 -3.06817 0.87068 1.44496 2.52677 2.82913 3.07786 3.46406 3.50641 3.54959 3.71411 4.11527 4.30424 4.39072 4.57815 4.61563 4.66479 4.72606 4.81681 4.91909 4.96718 5.01035 5.02725 5.09117 5.17724 5.30962 5.31928 5.39236 5.51790 5.53018 5.59420 5.61060 5.65429 5.70968 5.71922 5.76976 5.87955 5.90700 5.93422 6.00859 6.06912 6.08022 6.16260 6.29498 6.36206 6.43564 6.53395 6.62073 6.84438 7.03419 7.31543 7.73856 8.04205 8.06501 8.47583 9.26147 9.99348 10.18877 11.46708 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003202 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.745052 B = 8741.516809 C =10598.698571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.057 0.943 4 N -0.749 5.749 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.086 3.914 18 N -0.595 5.595 19 C 0.591 3.409 20 O -0.515 6.515 21 C -0.005 4.005 22 N -0.336 5.336 23 O 0.116 5.884 24 C -0.036 4.036 25 C -0.151 4.151 26 C -0.047 4.047 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.035 4.035 30 C 0.121 3.879 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.102 0.898 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 -9.667 -27.419 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.075 0.925 4 N -0.392 5.392 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.037 4.037 18 N -0.328 5.328 19 C 0.376 3.624 20 O -0.389 6.389 21 C -0.162 4.162 22 N -0.042 5.042 23 O 0.048 5.952 24 C -0.101 4.101 25 C -0.156 4.156 26 C -0.084 4.084 27 C -0.161 4.161 28 C -0.157 4.157 29 C -0.072 4.072 30 C 0.000 4.000 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.120 0.880 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.380 -8.684 -27.046 29.349 hybrid contribution 0.420 -1.640 0.502 1.766 sum 7.800 -10.324 -26.544 29.530 Atomic orbital electron populations 1.22445 0.98731 1.00843 1.00458 1.20149 0.92061 0.95555 0.84674 0.92522 1.42842 1.79762 1.09428 1.07172 1.19037 1.36842 0.95442 0.85698 0.89223 1.24634 1.01401 0.97367 0.95561 1.69702 1.52795 1.35549 1.00262 0.86613 0.78882 0.86865 0.76596 1.20791 1.21866 1.20394 1.21812 0.94424 1.00602 0.95795 0.91218 1.21636 1.01188 0.99174 0.93287 1.21983 0.94823 1.01336 0.98818 1.22469 0.94648 1.00162 0.86446 1.48058 1.43196 1.32713 1.08787 1.16984 0.79472 0.80166 0.85788 1.90834 1.60927 1.55976 1.31134 1.23111 1.02458 0.96964 0.93685 1.74421 1.13850 1.17218 0.98739 1.84682 1.46688 1.30469 1.33370 1.24106 1.00113 0.92597 0.93258 1.20675 1.01300 0.98498 0.95160 1.20021 1.01458 0.91831 0.95133 1.21723 0.99594 0.97367 0.97435 1.21660 0.97973 1.00465 0.95579 1.20272 0.96082 0.92936 0.97959 1.21801 0.94248 0.99223 0.84693 0.93725 0.92348 0.93915 0.80595 0.93136 0.90979 0.91573 0.91849 0.90782 0.91244 0.87002 0.89224 0.89629 0.90481 0.91359 0.90946 0.90002 0.88850 0.88705 0.87987 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.15 37.16 0.34 -2.53 16 2 C 0.19 3.52 2.47 -67.93 -0.17 3.35 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 N -0.75 -17.91 4.32 -53.42 -0.23 -18.14 16 5 C -0.24 -6.83 10.41 -15.06 -0.16 -6.98 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.94 -29.93 13.97 55.49 0.78 -29.16 16 9 Si 0.88 23.25 27.73 -169.99 -4.71 18.54 16 10 H -0.28 -7.54 7.11 56.52 0.40 -7.13 16 11 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 12 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 13 C -0.11 -1.70 1.97 -90.50 -0.18 -1.88 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.11 -1.43 4.85 -26.69 -0.13 -1.56 16 16 C -0.13 -1.47 6.10 -26.38 -0.16 -1.63 16 17 C 0.09 1.06 6.17 -3.48 -0.02 1.04 16 18 N -0.59 -9.21 2.97 -173.43 -0.51 -9.73 16 19 C 0.59 9.94 7.71 -12.11 -0.09 9.84 16 20 O -0.51 -10.25 15.62 5.37 0.08 -10.17 16 21 C 0.00 -0.07 6.87 -82.83 -0.57 -0.63 16 22 N -0.34 -4.21 8.69 33.29 0.29 -3.92 16 23 O 0.12 1.23 11.18 19.21 0.21 1.45 16 24 C -0.04 -0.33 7.38 -35.38 -0.26 -0.59 16 25 C -0.15 -1.77 6.04 -104.92 -0.63 -2.41 16 26 C -0.05 -0.49 5.64 -27.91 -0.16 -0.64 16 27 C -0.12 -0.82 5.92 -26.40 -0.16 -0.98 16 28 C -0.12 -0.58 5.88 -26.45 -0.16 -0.74 16 29 C -0.03 -0.17 6.31 -27.71 -0.17 -0.35 16 30 C 0.12 2.09 5.48 -3.71 -0.02 2.07 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.61 6.40 -51.93 -0.33 0.28 16 34 H 0.36 8.80 5.48 -40.82 -0.22 8.58 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.07 0.85 6.37 -51.93 -0.33 0.52 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.11 1.37 4.17 -57.22 -0.24 1.13 16 42 H 0.09 1.08 7.96 -51.93 -0.41 0.67 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 46 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.10 2.10 6.50 -51.93 -0.34 1.77 16 51 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -34.14 392.48 -9.20 -43.34 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.23 Total: 6.41 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.79 Total: -4.54 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.32 Total: -60.94 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.30 Total: -8.72 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.71 Total: 18.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.14 -9.20 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.780 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds