Wall clock time and date at job start Wed Apr 1 2020 04:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46946 * 2 1 4 4 N 1.46504 * 109.47331 * 120.00000 * 2 1 3 5 5 C 1.36936 * 120.00009 * 274.99981 * 4 2 1 6 6 H 1.07998 * 119.99674 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99853 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99886 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00033 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47103 * 90.00044 * 9 7 5 11 11 H 1.48501 * 109.47282 * 209.99798 * 9 7 5 12 12 H 1.48499 * 109.47482 * 330.00049 * 9 7 5 13 13 C 1.53002 * 109.47102 * 240.00144 * 2 1 3 14 14 H 1.08998 * 109.52120 * 300.07762 * 13 2 1 15 15 C 1.53036 * 109.49673 * 60.16080 * 13 2 1 16 16 C 1.53048 * 109.53896 * 181.31784 * 15 13 2 17 17 C 1.53621 * 109.24092 * 298.51112 * 16 15 13 18 18 N 1.46934 * 108.54292 * 54.85374 * 17 16 15 19 19 C 1.34776 * 120.62733 * 126.37195 * 18 17 16 20 20 O 1.21498 * 119.99406 * 186.47787 * 19 18 17 21 21 C 1.48329 * 120.00337 * 6.47209 * 19 18 17 22 22 N 1.31495 * 127.15181 * 6.19504 * 21 19 18 23 23 O 1.21436 * 111.52312 * 180.02562 * 22 21 19 24 24 C 1.33182 * 111.57020 * 359.88952 * 23 22 21 25 25 C 1.35379 * 106.63509 * 0.15148 * 24 23 22 26 26 C 1.50061 * 124.93406 * 179.87358 * 25 24 23 27 27 C 1.53538 * 108.23453 * 343.82732 * 26 25 24 28 28 C 1.53107 * 109.51672 * 49.21267 * 27 26 25 29 29 C 1.50595 * 129.60511 * 180.15824 * 24 23 22 30 30 C 1.46923 * 118.74005 * 306.09283 * 18 17 16 31 31 H 1.08998 * 109.46946 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46834 * 299.99389 * 1 2 3 33 33 H 1.08996 * 109.47168 * 60.00255 * 1 2 3 34 34 H 0.97006 * 119.99517 * 94.99786 * 4 2 1 35 35 H 0.97003 * 119.99863 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46072 * 301.33325 * 15 13 2 37 37 H 1.08993 * 109.46378 * 61.30954 * 15 13 2 38 38 H 1.09001 * 109.49487 * 58.58371 * 16 15 13 39 39 H 1.08993 * 109.49849 * 178.68313 * 16 15 13 40 40 H 1.09000 * 109.73855 * 295.11850 * 17 16 15 41 41 H 1.08994 * 109.66772 * 174.54504 * 17 16 15 42 42 H 1.08994 * 109.71173 * 224.13959 * 26 25 24 43 43 H 1.08999 * 109.71027 * 103.51201 * 26 25 24 44 44 H 1.09007 * 109.46533 * 169.22342 * 27 26 25 45 45 H 1.09002 * 109.46740 * 289.19709 * 27 26 25 46 46 H 1.09003 * 109.42599 * 50.24290 * 28 27 26 47 47 H 1.08993 * 109.43301 * 170.08712 * 28 27 26 48 48 H 1.09001 * 109.69872 * 43.51917 * 29 24 23 49 49 H 1.09000 * 109.72825 * 282.95289 * 29 24 23 50 50 H 1.08993 * 109.58692 * 173.64669 * 30 18 17 51 51 H 1.09000 * 109.58843 * 294.07744 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6115 -0.6620 3.5092 8 7 2.7377 -0.0053 4.6429 9 14 3.0544 -2.4748 3.4256 10 1 4.4870 -2.6180 3.0618 11 1 2.8145 -3.1045 4.7489 12 1 2.2140 -3.1430 2.3998 13 6 2.0400 -0.7212 -1.2493 14 1 1.6760 -1.7486 -1.2508 15 6 1.5335 0.0021 -2.4992 16 6 2.0159 -0.7374 -3.7493 17 6 3.5518 -0.7343 -3.7784 18 7 4.0442 -1.3005 -2.5151 19 6 4.9168 -2.3276 -2.5169 20 8 5.2260 -2.8638 -1.4714 21 6 5.4996 -2.8034 -3.7952 22 7 5.3547 -2.2615 -4.9845 23 8 5.9564 -2.8856 -5.8348 24 6 6.5896 -3.9357 -5.3152 25 6 6.3239 -3.9307 -3.9877 26 6 6.8356 -4.9427 -3.0051 27 6 7.3397 -6.1623 -3.7899 28 6 8.2660 -5.6980 -4.9171 29 6 7.4488 -4.9705 -5.9927 30 6 3.5720 -0.7216 -1.2499 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 3.0604 -0.4628 5.4350 36 1 0.4438 0.0253 -2.4888 37 1 1.9183 1.0218 -2.5097 38 1 1.6520 -1.7647 -3.7273 39 1 1.6353 -0.2351 -4.6386 40 1 3.9158 0.2873 -3.8874 41 1 3.9042 -1.3409 -4.6125 42 1 6.0307 -5.2439 -2.3347 43 1 7.6543 -4.5132 -2.4277 44 1 7.8872 -6.8248 -3.1195 45 1 6.4903 -6.6971 -4.2149 46 1 9.0176 -5.0201 -4.5126 47 1 8.7598 -6.5628 -5.3601 48 1 8.1217 -4.4841 -6.6990 49 1 6.8170 -5.6852 -6.5201 50 1 3.9376 -1.3198 -0.4154 51 1 3.9376 0.3010 -1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568412374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:08 Heat of formation + Delta-G solvation = 14.575962 kcal Electronic energy + Delta-G solvation = -31788.545034 eV Core-core repulsion = 27690.330315 eV Total energy + Delta-G solvation = -4098.214719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.25952 -41.43055 -39.35300 -38.58255 -37.19293 -35.28402 -34.53113 -33.36792 -32.08209 -31.88871 -31.26498 -30.14796 -27.27015 -26.20205 -25.41058 -24.69343 -24.06839 -23.69679 -22.31844 -21.40982 -20.96234 -20.12637 -19.61256 -19.03223 -18.33166 -17.91767 -17.10699 -16.80041 -16.51783 -16.03969 -15.99010 -15.64469 -15.39259 -14.98727 -14.90232 -14.83577 -14.49921 -14.39518 -14.36429 -14.30258 -14.20606 -14.06803 -13.60935 -13.29305 -13.28594 -12.95365 -12.74252 -12.54826 -12.39823 -12.26153 -11.98593 -11.91593 -11.89668 -11.84616 -11.72495 -11.67686 -11.48059 -11.39310 -11.36174 -11.12613 -11.02295 -10.15346 -9.84714 -9.33371 -8.05884 -5.36502 -0.10464 0.56396 1.29968 1.35896 1.38274 1.54398 1.86893 1.88689 2.42792 2.67468 3.26772 3.33283 3.45959 3.56054 3.72407 3.77152 3.86350 3.93544 3.95696 3.98769 4.05933 4.16358 4.21134 4.28533 4.37435 4.43910 4.51695 4.54265 4.61366 4.63372 4.75874 4.81809 4.84361 4.88311 4.89510 4.94339 4.97540 4.97827 5.05100 5.13160 5.16774 5.19536 5.26153 5.29805 5.36763 5.40755 5.42646 5.56748 5.76112 6.09231 6.19713 6.70126 6.95204 7.05047 7.82945 7.99608 9.16023 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003202 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.745052 B = 8741.516809 C =10598.698571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.178 3.822 3 H 0.052 0.948 4 N -0.754 5.754 5 C -0.216 4.216 6 H 0.065 0.935 7 C -0.058 4.058 8 N -0.982 5.982 9 Si 0.941 3.059 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.262 1.262 13 C -0.093 4.093 14 H 0.060 0.940 15 C -0.109 4.109 16 C -0.123 4.123 17 C 0.081 3.919 18 N -0.593 5.593 19 C 0.582 3.418 20 O -0.561 6.561 21 C -0.032 4.032 22 N -0.339 5.339 23 O 0.131 5.869 24 C -0.010 4.010 25 C -0.178 4.178 26 C -0.048 4.048 27 C -0.119 4.119 28 C -0.116 4.116 29 C -0.034 4.034 30 C 0.124 3.876 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.113 0.887 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.060 0.940 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -10.953 -32.171 34.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.070 3.930 3 H 0.070 0.930 4 N -0.397 5.397 5 C -0.347 4.347 6 H 0.083 0.917 7 C -0.250 4.250 8 N -0.633 5.633 9 Si 0.770 3.230 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.187 1.187 13 C -0.113 4.113 14 H 0.078 0.922 15 C -0.147 4.147 16 C -0.161 4.161 17 C -0.040 4.040 18 N -0.325 5.325 19 C 0.369 3.631 20 O -0.439 6.439 21 C -0.188 4.188 22 N -0.044 5.044 23 O 0.060 5.940 24 C -0.075 4.075 25 C -0.183 4.183 26 C -0.086 4.086 27 C -0.156 4.156 28 C -0.153 4.153 29 C -0.071 4.071 30 C 0.002 3.998 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.191 0.809 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.131 0.869 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.079 0.921 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.340 -9.942 -31.870 34.182 hybrid contribution 0.447 -1.158 1.854 2.231 sum 7.787 -11.100 -30.016 32.936 Atomic orbital electron populations 1.22302 0.96732 1.01129 1.01304 1.20438 0.93347 0.95169 0.84056 0.93017 1.42932 1.80009 1.09340 1.07416 1.19034 1.34111 0.94489 0.87077 0.91710 1.25286 1.02870 1.01284 0.95531 1.69842 1.55195 1.37216 1.01048 0.85619 0.78104 0.82495 0.76764 1.21752 1.21760 1.18711 1.21663 0.93239 1.00177 0.96209 0.92189 1.21632 1.02165 0.99260 0.91606 1.21965 0.93435 1.01281 0.99430 1.22726 0.95801 1.00609 0.84873 1.48151 1.42755 1.32310 1.09259 1.17445 0.79256 0.79989 0.86413 1.90794 1.62514 1.57571 1.33009 1.22866 1.04250 0.98603 0.93094 1.74365 1.14313 1.17500 0.98213 1.84656 1.46089 1.30601 1.32704 1.24849 0.98484 0.91823 0.92363 1.20913 1.02068 0.98561 0.96774 1.20014 1.00048 0.93367 0.95140 1.21728 1.00339 0.95559 0.97983 1.21699 0.97328 1.01478 0.94831 1.20636 0.96156 0.92160 0.98177 1.21578 0.95260 0.98320 0.84615 0.93691 0.94731 0.89822 0.80861 0.93442 0.89205 0.90494 0.92420 0.87289 0.90057 0.86530 0.92146 0.91036 0.89582 0.90733 0.91582 0.86879 0.86129 0.86108 0.92101 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.15 71.98 0.66 -4.51 16 2 C 0.18 6.70 2.47 44.99 0.11 6.81 16 3 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 4 N -0.75 -36.75 4.32 -322.93 -1.40 -38.14 16 5 C -0.22 -12.64 10.41 84.03 0.87 -11.77 16 6 H 0.06 4.07 8.06 -2.91 -0.02 4.05 16 7 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 8 N -0.98 -65.10 13.97 21.65 0.30 -64.80 16 9 Si 0.94 49.89 27.73 68.60 1.90 51.79 16 10 H -0.29 -15.71 7.11 99.48 0.71 -15.00 16 11 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 12 H -0.26 -13.00 6.52 99.48 0.65 -12.35 16 13 C -0.09 -2.90 1.97 -10.71 -0.02 -2.93 16 14 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 15 C -0.11 -2.38 4.85 30.62 0.15 -2.23 16 16 C -0.12 -2.35 6.10 30.82 0.19 -2.16 16 17 C 0.08 1.87 6.17 86.51 0.53 2.41 16 18 N -0.59 -18.62 2.97 -820.92 -2.43 -21.05 16 19 C 0.58 20.53 7.71 86.93 0.67 21.20 16 20 O -0.56 -24.13 15.62 -3.71 -0.06 -24.19 16 21 C -0.03 -0.92 6.87 42.55 0.29 -0.63 16 22 N -0.34 -8.09 8.69 -48.95 -0.43 -8.52 16 23 O 0.13 2.45 11.18 78.75 0.88 3.33 16 24 C -0.01 -0.17 7.38 24.99 0.18 0.02 16 25 C -0.18 -4.13 6.04 -20.06 -0.12 -4.25 16 26 C -0.05 -1.04 5.64 29.83 0.17 -0.87 16 27 C -0.12 -1.39 5.92 30.81 0.18 -1.20 16 28 C -0.12 -0.73 5.88 30.78 0.18 -0.55 16 29 C -0.03 -0.19 6.31 29.96 0.19 -0.01 16 30 C 0.12 4.40 5.48 86.36 0.47 4.87 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 2.10 6.40 -2.39 -0.02 2.09 16 34 H 0.36 17.81 5.48 -92.70 -0.51 17.30 16 35 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 36 H 0.09 1.71 6.37 -2.39 -0.02 1.69 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.12 2.65 4.17 -12.84 -0.05 2.60 16 42 H 0.06 1.61 7.96 -2.39 -0.02 1.59 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 46 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 47 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 50 H 0.06 2.67 6.50 -2.39 -0.02 2.65 16 51 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -79.94 392.48 4.28 -75.66 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.33 Total: 24.86 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.18 Total: 1.06 kcal Atomic # 7 Polarization: -128.56 SS G_CDS: -3.95 Total: -132.51 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.82 Total: -20.86 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 1.90 Total: 51.79 kcal Total: -79.94 4.28 -75.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.235 kcal (2) G-P(sol) polarization free energy of solvation -79.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds